Wall clock time and date at job start Tue Mar 31 2020 17:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35959 * 116.99592 * 2 1 4 4 C 1.38076 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.39970 * 119.84182 * 179.97438 * 4 3 2 6 6 C 1.46959 * 120.08189 * 180.02562 * 5 4 3 7 7 C 1.35027 * 120.00471 * 180.02562 * 6 5 4 8 8 C 1.46251 * 120.00280 * 180.02562 * 7 6 5 9 9 O 1.21725 * 120.00274 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99947 * 180.02562 * 8 7 6 11 11 C 1.47579 * 134.49475 * 359.97438 * 10 8 7 12 12 C 1.53936 * 86.11832 * 204.64848 * 11 10 8 13 13 H 1.08999 * 113.84266 * 222.03548 * 12 11 10 14 14 C 1.53005 * 113.74215 * 90.74093 * 12 11 10 15 15 C 1.47581 * 134.49181 * 179.97438 * 10 8 7 16 16 H 1.09005 * 113.76867 * 41.05407 * 15 10 8 17 17 C 1.52999 * 113.77018 * 269.65617 * 15 10 8 18 18 C 1.40037 * 119.84138 * 0.27487 * 5 4 3 19 19 C 1.37643 * 119.99688 * 359.46398 * 18 5 4 20 20 C 1.39062 * 120.16373 * 0.51882 * 19 18 5 21 21 O 1.35611 * 119.92249 * 179.74108 * 20 19 18 22 22 C 1.34760 * 116.99970 * 354.37631 * 21 20 19 23 23 H 1.08000 * 120.00458 * 5.06669 * 22 21 20 24 24 C 1.38709 * 120.00096 * 185.06422 * 22 21 20 25 25 N 1.31524 * 119.99989 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00031 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46905 * 89.99444 * 26 24 22 28 28 H 1.48493 * 109.46837 * 210.00047 * 26 24 22 29 29 H 1.48498 * 109.46797 * 329.99966 * 26 24 22 30 30 H 1.08998 * 109.46813 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47285 * 300.00095 * 1 2 3 32 32 H 1.08994 * 109.47015 * 60.00453 * 1 2 3 33 33 H 1.08002 * 120.07895 * 359.95600 * 4 3 2 34 34 H 1.08003 * 119.99762 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99766 * 359.97438 * 7 6 5 36 36 H 1.09002 * 113.76462 * 90.34114 * 11 10 8 37 37 H 1.09003 * 113.76908 * 318.95689 * 11 10 8 38 38 H 1.08998 * 109.47286 * 323.32321 * 14 12 11 39 39 H 1.09000 * 109.47405 * 203.32369 * 14 12 11 40 40 H 1.09004 * 109.47130 * 83.32257 * 14 12 11 41 41 H 1.08997 * 109.47113 * 323.50480 * 17 15 10 42 42 H 1.09000 * 109.47067 * 83.50469 * 17 15 10 43 43 H 1.09003 * 109.46656 * 203.50549 * 17 15 10 44 44 H 1.07994 * 119.99760 * 179.70294 * 18 5 4 45 45 H 1.07998 * 119.91948 * 180.23473 * 19 18 5 46 46 H 0.97003 * 119.99653 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2941 2.3694 -0.0005 5 6 1.9330 3.6148 0.0000 6 6 1.1378 4.8507 0.0000 7 6 1.7557 6.0513 0.0000 8 6 0.9642 7.2811 0.0006 9 8 -0.2516 7.2225 0.0006 10 7 1.5811 8.4795 0.0001 11 6 2.9905 8.9173 -0.0006 12 6 2.4771 10.2196 0.6398 13 1 2.9394 11.1207 0.2369 14 6 2.4623 10.1897 2.1695 15 6 1.1184 9.8809 -0.0001 16 1 0.2666 10.0624 0.6554 17 6 0.9326 10.4688 -1.4003 18 6 3.3318 3.6804 -0.0047 19 6 4.0751 2.5219 0.0012 20 6 3.4405 1.2846 0.0011 21 8 4.1775 0.1463 0.0017 22 6 5.5131 0.2822 -0.1153 23 1 5.9573 1.2666 -0.1216 24 6 6.3176 -0.8422 -0.2275 25 7 7.6210 -0.7095 -0.3422 26 14 5.5494 -2.5450 -0.2172 27 1 5.2193 -2.9475 -1.6081 28 1 6.5089 -3.5173 0.3651 29 1 4.3093 -2.5236 0.5994 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.2155 2.3144 -0.0017 34 1 0.0590 4.7986 -0.0008 35 1 2.8345 6.1033 0.0004 36 1 3.4078 9.0530 -0.9983 37 1 3.6335 8.3292 0.6544 38 1 2.1830 9.1929 2.5108 39 1 1.7395 10.9164 2.5402 40 1 3.4541 10.4384 2.5474 41 1 1.7076 10.0826 -2.0623 42 1 -0.0476 10.1873 -1.7854 43 1 1.0052 11.5552 -1.3507 44 1 3.8274 4.6400 -0.0092 45 1 5.1538 2.5740 0.0014 46 1 8.1836 -1.4959 -0.4203 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293930473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:53 Heat of formation + Delta-G solvation = -41.727899 kcal Electronic energy + Delta-G solvation = -27283.310854 eV Core-core repulsion = 23333.210963 eV Total energy + Delta-G solvation = -3950.099891 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.58796 -41.38660 -39.46029 -39.22392 -38.10566 -34.69356 -34.12032 -32.35070 -31.38563 -31.23281 -30.16858 -28.05748 -27.68707 -27.16959 -25.30938 -24.08417 -23.34065 -22.18984 -20.61975 -19.93978 -19.53876 -19.12039 -18.21847 -17.82914 -17.24306 -16.93238 -16.75192 -16.58832 -16.30045 -15.61109 -15.56384 -15.44815 -15.11066 -15.01116 -14.79983 -14.38804 -14.22829 -14.08671 -13.84171 -13.43270 -13.36629 -13.26646 -13.21801 -12.97878 -12.75990 -12.62217 -12.56388 -12.38397 -12.17073 -12.13772 -12.07678 -12.00773 -11.44197 -11.29446 -11.08037 -10.82369 -10.64024 -9.73118 -9.51779 -8.63184 -8.53854 -6.20991 -0.39728 0.46603 1.02928 1.30393 1.34659 1.52665 1.85172 2.27157 2.29342 2.46167 2.76860 2.91980 3.07799 3.29010 3.48171 3.84199 3.85680 4.02862 4.08765 4.11809 4.21729 4.27731 4.31037 4.37504 4.42540 4.46538 4.50563 4.52753 4.57893 4.71992 4.75358 4.84907 4.89006 4.93756 4.95627 5.01470 5.07607 5.12839 5.15685 5.27578 5.40123 5.45796 5.47322 5.57110 5.70168 5.74405 5.98354 6.51975 6.71251 6.80402 7.14950 7.54664 8.56653 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.002422 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.362584 B =11559.291051 C =12856.862427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.050 3.950 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.010 3.990 7 C -0.232 4.232 8 C 0.564 3.436 9 O -0.600 6.600 10 N -0.642 5.642 11 C 0.098 3.902 12 C -0.106 4.106 13 H 0.125 0.875 14 C -0.135 4.135 15 C 0.121 3.879 16 H 0.074 0.926 17 C -0.149 4.149 18 C -0.070 4.070 19 C -0.207 4.207 20 C 0.110 3.890 21 O -0.228 6.228 22 C -0.399 4.399 23 H 0.092 0.908 24 C 0.018 3.982 25 N -0.913 5.913 26 Si 0.962 3.038 27 H -0.267 1.267 28 H -0.264 1.264 29 H -0.268 1.268 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.044 0.956 43 H 0.100 0.900 44 H 0.151 0.849 45 H 0.130 0.870 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.374 21.258 0.890 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.005 3.995 4 C -0.152 4.152 5 C -0.123 4.123 6 C -0.010 4.010 7 C -0.252 4.252 8 C 0.359 3.641 9 O -0.484 6.484 10 N -0.376 5.376 11 C -0.024 4.024 12 C -0.124 4.124 13 H 0.143 0.857 14 C -0.193 4.193 15 C 0.018 3.982 16 H 0.092 0.908 17 C -0.207 4.207 18 C -0.088 4.088 19 C -0.226 4.226 20 C 0.059 3.941 21 O -0.134 6.134 22 C -0.475 4.475 23 H 0.109 0.891 24 C -0.182 4.182 25 N -0.553 5.553 26 Si 0.785 3.215 27 H -0.192 1.192 28 H -0.189 1.189 29 H -0.192 1.192 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.178 0.822 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.168 0.832 45 H 0.147 0.853 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.846 20.519 0.895 23.710 hybrid contribution -0.059 -0.912 -0.091 0.919 sum -11.905 19.607 0.804 22.952 Atomic orbital electron populations 1.23330 0.76762 1.05290 1.02264 1.86145 1.23183 1.26359 1.89812 1.18234 0.88633 0.85969 1.06647 1.21273 1.00369 0.89793 1.03736 1.18551 0.92768 0.92200 1.08751 1.22147 0.99357 0.90313 0.89193 1.22761 1.00871 0.91069 1.10512 1.18250 0.86658 0.83866 0.75372 1.90754 1.15846 1.87773 1.54076 1.50243 1.10851 1.04596 1.71866 1.23627 0.82769 0.93665 1.02306 1.23004 0.94164 0.98821 0.96460 0.85727 1.21588 1.03211 1.01381 0.93070 1.23017 0.98879 0.78430 0.97845 0.90761 1.21918 1.01874 1.02572 0.94292 1.21244 0.92701 0.97784 0.97090 1.21049 1.00957 0.91138 1.09468 1.19225 0.89051 0.87218 0.98560 1.83553 1.19473 1.28806 1.81583 1.20828 0.78320 0.96670 1.51695 0.89052 1.25172 0.94954 1.02717 0.95354 1.69690 1.04030 1.32857 1.48681 0.85334 0.78646 0.78140 0.79394 1.19248 1.18896 1.19207 0.86796 0.91530 0.91533 0.82212 0.85322 0.83821 0.87674 0.89015 0.94476 0.91514 0.90277 0.91554 0.93697 0.88150 0.83169 0.85269 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -13.24 10.28 -79.11 -0.81 -14.06 16 3 C 0.05 2.02 6.70 22.56 0.15 2.17 16 4 C -0.13 -4.29 8.77 22.65 0.20 -4.09 16 5 C -0.12 -3.80 5.87 -20.14 -0.12 -3.92 16 6 C 0.01 0.27 9.45 23.82 0.23 0.49 16 7 C -0.23 -5.88 9.20 23.61 0.22 -5.67 16 8 C 0.56 15.74 7.97 86.32 0.69 16.43 16 9 O -0.60 -21.41 16.96 -4.43 -0.08 -21.48 16 10 N -0.64 -13.06 3.28 -817.96 -2.68 -15.74 16 11 C 0.10 1.17 7.61 86.48 0.66 1.83 16 12 C -0.11 -0.99 4.20 -10.13 -0.04 -1.03 16 13 H 0.12 0.49 8.10 -2.39 -0.02 0.47 16 14 C -0.14 -1.40 9.65 71.98 0.69 -0.71 16 15 C 0.12 1.86 4.59 45.09 0.21 2.07 16 16 H 0.07 1.35 8.10 -2.38 -0.02 1.33 16 17 C -0.15 -1.80 9.84 71.98 0.71 -1.09 16 18 C -0.07 -2.32 9.40 22.57 0.21 -2.11 16 19 C -0.21 -8.65 9.14 22.33 0.20 -8.45 16 20 C 0.11 5.19 6.67 22.80 0.15 5.34 16 21 O -0.23 -12.52 8.35 -6.52 -0.05 -12.57 16 22 C -0.40 -23.08 9.94 67.93 0.68 -22.41 16 23 H 0.09 5.37 5.42 -2.91 -0.02 5.36 16 24 C 0.02 1.02 5.49 84.85 0.47 1.49 16 25 N -0.91 -53.30 13.96 21.62 0.30 -53.00 16 26 Si 0.96 45.88 28.62 68.60 1.96 47.85 16 27 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 28 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 30 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 32 H 0.07 1.41 7.66 -2.39 -0.02 1.39 16 33 H 0.16 4.00 6.28 -2.91 -0.02 3.98 16 34 H 0.13 3.51 7.52 -2.91 -0.02 3.49 16 35 H 0.14 3.04 5.89 -2.91 -0.02 3.02 16 36 H 0.11 0.91 7.77 -2.39 -0.02 0.89 16 37 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.04 0.56 7.99 -2.39 -0.02 0.54 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.07 0.77 7.51 -2.39 -0.02 0.75 16 42 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.15 3.89 6.15 -2.91 -0.02 3.87 16 45 H 0.13 5.73 5.62 -2.91 -0.02 5.72 16 46 H 0.29 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.61 385.83 6.04 -69.57 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.00 Total: 17.52 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.41 Total: -18.09 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -2.38 Total: -68.74 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -0.94 Total: -48.11 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.96 Total: 47.85 kcal Total: -75.61 6.04 -69.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.840 kcal (2) G-P(sol) polarization free energy of solvation -75.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds