Wall clock time and date at job start Tue Mar 31 2020 17:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 117.00094 * 2 1 4 4 C 1.38082 * 120.00191 * 0.22750 * 3 2 1 5 5 C 1.39981 * 119.83678 * 180.23357 * 4 3 2 6 6 C 1.46963 * 120.07521 * 179.78799 * 5 4 3 7 7 C 1.35023 * 119.99873 * 179.72585 * 6 5 4 8 8 C 1.46260 * 119.99963 * 180.02562 * 7 6 5 9 9 O 1.21714 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99633 * 179.97438 * 8 7 6 11 11 C 1.47067 * 136.06223 * 359.97438 * 10 8 7 12 12 C 1.53490 * 88.05062 * 207.05618 * 11 10 8 13 13 H 1.08996 * 114.20546 * 87.54733 * 12 11 10 14 14 C 1.52999 * 114.20865 * 220.37725 * 12 11 10 15 15 C 1.47069 * 136.05344 * 179.97438 * 10 8 7 16 16 H 1.09008 * 113.46481 * 267.69156 * 15 10 8 17 17 C 1.52997 * 113.46896 * 38.07217 * 15 10 8 18 18 C 1.40032 * 119.84466 * 359.51670 * 5 4 3 19 19 C 1.37651 * 119.99579 * 0.24692 * 18 5 4 20 20 C 1.39057 * 120.16512 * 0.02562 * 19 18 5 21 21 O 1.35613 * 119.91884 * 179.97438 * 20 19 18 22 22 C 1.34765 * 117.00216 * 354.38545 * 21 20 19 23 23 H 1.08001 * 119.99972 * 5.05746 * 22 21 20 24 24 C 1.38704 * 119.99802 * 185.05962 * 22 21 20 25 25 N 1.31515 * 120.00131 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99817 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47031 * 90.00092 * 26 24 22 28 28 H 1.48501 * 109.47474 * 210.00138 * 26 24 22 29 29 H 1.48505 * 109.47232 * 330.00392 * 26 24 22 30 30 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47475 * 300.00661 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00256 * 1 2 3 33 33 H 1.07997 * 120.08280 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.00438 * 359.72624 * 6 5 4 35 35 H 1.08000 * 120.00120 * 359.97438 * 7 6 5 36 36 H 1.08998 * 113.46792 * 321.87507 * 11 10 8 37 37 H 1.09008 * 113.46292 * 92.24803 * 11 10 8 38 38 H 1.09003 * 109.47460 * 40.49398 * 14 12 11 39 39 H 1.08997 * 109.47387 * 160.49684 * 14 12 11 40 40 H 1.09004 * 109.47088 * 280.49500 * 14 12 11 41 41 H 1.08994 * 109.47024 * 40.50031 * 17 15 10 42 42 H 1.09002 * 109.47229 * 160.50196 * 17 15 10 43 43 H 1.09004 * 109.47062 * 280.49279 * 17 15 10 44 44 H 1.07993 * 119.99889 * 180.22840 * 18 5 4 45 45 H 1.07997 * 119.91289 * 179.97438 * 19 18 5 46 46 H 0.97003 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0047 5 6 1.9333 3.6148 -0.0002 6 6 1.1381 4.8507 0.0001 7 6 1.7561 6.0511 0.0009 8 6 0.9647 7.2811 0.0018 9 8 -0.2510 7.2225 0.0013 10 7 1.5817 8.4794 0.0031 11 6 2.9738 8.9537 0.0045 12 6 2.4832 10.2295 0.7028 13 1 2.4456 10.1577 1.7897 14 6 3.1459 11.5139 0.2008 15 6 1.1591 9.8880 0.0038 16 1 1.0737 10.3161 -0.9951 17 6 -0.0749 10.1535 0.8685 18 6 3.3321 3.6802 0.0003 19 6 4.0753 2.5216 0.0005 20 6 3.4405 1.2843 -0.0003 21 8 4.1776 0.1460 -0.0006 22 6 5.5132 0.2819 -0.1176 23 1 5.9574 1.2663 -0.1234 24 6 6.3174 -0.8425 -0.2306 25 7 5.7765 -2.0413 -0.2241 26 14 8.1688 -0.6541 -0.3935 27 1 8.7869 -0.6530 0.9568 28 1 8.7137 -1.7853 -1.1864 29 1 8.4776 0.6259 -1.0802 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2157 2.3145 0.0089 34 1 0.0594 4.7987 -0.0003 35 1 2.8349 6.1031 0.0017 36 1 3.6379 8.3488 0.6218 37 1 3.3727 9.1316 -0.9943 38 1 3.2504 11.4692 -0.8833 39 1 2.5290 12.3708 0.4713 40 1 4.1306 11.6169 0.6568 41 1 -0.0029 9.5774 1.7909 42 1 -0.1298 11.2157 1.1069 43 1 -0.9711 9.8567 0.3236 44 1 3.8277 4.6397 0.0002 45 1 5.1540 2.5736 0.0004 46 1 6.3390 -2.8276 -0.3028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293930477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:58 Heat of formation + Delta-G solvation = -20.905676 kcal Electronic energy + Delta-G solvation = -27136.510521 eV Core-core repulsion = 23187.313549 eV Total energy + Delta-G solvation = -3949.196972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71052 -39.71420 -38.07212 -37.67576 -36.49811 -33.05754 -32.30561 -31.80000 -30.56791 -29.74157 -28.68626 -27.10970 -26.35312 -25.49277 -23.87043 -22.78615 -21.77753 -21.10923 -19.90013 -18.51906 -18.19071 -17.74182 -16.79836 -16.36134 -15.75335 -15.51787 -15.29965 -15.20863 -14.74721 -14.57275 -14.27124 -13.99151 -13.83016 -13.65825 -13.58859 -13.44943 -13.25268 -12.83428 -12.43823 -12.20019 -11.97004 -11.91329 -11.83774 -11.82071 -11.69438 -11.67079 -11.44575 -11.12139 -11.03194 -10.78991 -10.70060 -10.51435 -10.44967 -9.68910 -9.57298 -9.41821 -8.89108 -8.72963 -7.98772 -6.91771 -6.62241 -4.13687 1.02603 2.10562 2.53012 2.79632 3.04327 3.05477 3.10377 3.56680 3.82483 3.92136 3.93908 4.45826 4.49827 4.59836 4.78370 4.89935 4.94838 4.98999 5.00638 5.08819 5.18380 5.24017 5.30153 5.36978 5.44437 5.45830 5.54225 5.55834 5.60078 5.64897 5.69788 5.70701 5.81584 5.85996 5.95146 5.99784 6.12537 6.20686 6.43663 6.49765 6.59676 6.85523 7.00226 7.08237 7.25639 7.46339 7.74432 7.78222 8.07076 8.32840 8.80808 9.49712 10.53593 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.002463 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.205363 B =11363.265719 C =13361.935331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.165 4.165 6 C 0.034 3.966 7 C -0.271 4.271 8 C 0.585 3.415 9 O -0.555 6.555 10 N -0.646 5.646 11 C 0.103 3.897 12 C -0.127 4.127 13 H 0.104 0.896 14 C -0.140 4.140 15 C 0.132 3.868 16 H 0.088 0.912 17 C -0.152 4.152 18 C -0.059 4.059 19 C -0.224 4.224 20 C 0.148 3.852 21 O -0.147 6.147 22 C -0.391 4.391 23 H 0.097 0.903 24 C 0.041 3.959 25 N -0.845 5.845 26 Si 0.945 3.055 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.265 1.265 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 20.617 0.767 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.167 4.167 6 C 0.014 3.986 7 C -0.292 4.292 8 C 0.380 3.620 9 O -0.436 6.436 10 N -0.382 5.382 11 C -0.021 4.021 12 C -0.146 4.146 13 H 0.122 0.878 14 C -0.198 4.198 15 C 0.029 3.971 16 H 0.106 0.894 17 C -0.210 4.210 18 C -0.078 4.078 19 C -0.244 4.244 20 C 0.092 3.908 21 O -0.048 6.048 22 C -0.466 4.466 23 H 0.115 0.885 24 C -0.166 4.166 25 N -0.477 5.477 26 Si 0.769 3.231 27 H -0.196 1.196 28 H -0.200 1.200 29 H -0.189 1.189 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.226 19.614 0.758 20.313 hybrid contribution 0.761 0.218 -0.157 0.807 sum -4.466 19.832 0.601 20.338 Atomic orbital electron populations 1.22918 0.80167 1.03073 1.00429 1.86234 1.19574 1.26184 1.89713 1.18046 0.89379 0.84605 1.07293 1.20881 0.98607 0.90901 1.05156 1.18162 0.92775 0.91373 1.14354 1.22223 0.99110 0.90905 0.86393 1.22388 0.99773 0.91270 1.15733 1.17949 0.86991 0.81978 0.75064 1.90768 1.14053 1.86765 1.51979 1.49579 1.09241 1.04697 1.74656 1.23031 0.85148 0.93285 1.00607 1.23115 0.95862 0.94852 1.00819 0.87811 1.21642 1.00703 0.96145 1.01287 1.22696 0.94950 0.80477 0.98952 0.89378 1.21887 0.97638 1.01264 1.00168 1.20921 0.92498 0.97324 0.97039 1.20828 1.00698 0.90732 1.12151 1.18879 0.88269 0.87650 0.96031 1.83990 1.19716 1.25822 1.75276 1.21514 0.78384 0.95075 1.51657 0.88532 1.25413 1.00899 0.94148 0.96102 1.70046 1.36646 0.97830 1.43154 0.85649 0.79887 0.78704 0.78872 1.19629 1.20048 1.18920 0.88956 0.93453 0.93429 0.85848 0.85995 0.85982 0.90202 0.89821 0.92195 0.91977 0.91845 0.92117 0.91649 0.91741 0.86708 0.84509 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.51 10.28 -34.19 -0.35 -6.86 16 3 C 0.05 1.12 6.70 -39.12 -0.26 0.86 16 4 C -0.14 -2.49 8.77 -38.99 -0.34 -2.84 16 5 C -0.17 -2.92 5.87 -105.04 -0.62 -3.54 16 6 C 0.03 0.53 9.45 -37.19 -0.35 0.18 16 7 C -0.27 -4.01 9.25 -37.50 -0.35 -4.36 16 8 C 0.58 9.02 7.89 -13.04 -0.10 8.92 16 9 O -0.56 -10.27 16.44 5.18 0.09 -10.18 16 10 N -0.65 -7.72 3.57 -178.93 -0.64 -8.36 16 11 C 0.10 0.84 7.88 -8.51 -0.07 0.77 16 12 C -0.13 -0.87 4.25 -90.07 -0.38 -1.25 16 13 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 14 C -0.14 -0.66 9.74 37.16 0.36 -0.29 16 15 C 0.13 1.22 4.26 -72.35 -0.31 0.92 16 16 H 0.09 0.74 8.10 -51.92 -0.42 0.32 16 17 C -0.15 -1.45 9.25 37.16 0.34 -1.11 16 18 C -0.06 -1.06 9.40 -39.12 -0.37 -1.43 16 19 C -0.22 -4.67 9.14 -39.49 -0.36 -5.03 16 20 C 0.15 3.56 6.67 -38.76 -0.26 3.30 16 21 O -0.15 -4.14 9.52 -13.96 -0.13 -4.27 16 22 C -0.39 -10.49 9.48 30.90 0.29 -10.20 16 23 H 0.10 2.34 5.18 -52.49 -0.27 2.07 16 24 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 25 N -0.84 -24.01 13.67 55.48 0.76 -23.26 16 26 Si 0.95 19.51 29.55 -169.99 -5.02 14.48 16 27 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 28 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 29 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 32 H 0.05 0.63 7.67 -51.93 -0.40 0.24 16 33 H 0.12 1.91 6.28 -52.49 -0.33 1.58 16 34 H 0.12 1.92 7.52 -52.49 -0.39 1.52 16 35 H 0.12 1.62 5.97 -52.49 -0.31 1.30 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.58 8.03 -51.92 -0.42 0.16 16 38 H 0.06 0.27 8.03 -51.93 -0.42 -0.15 16 39 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.12 1.71 6.15 -52.49 -0.32 1.39 16 45 H 0.14 2.76 5.61 -52.49 -0.29 2.46 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -33.12 387.29 -7.83 -40.95 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.49 Total: 4.32 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -1.87 Total: -12.67 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.12 Total: -31.61 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.40 Total: -21.31 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.12 -7.83 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.047 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds