Wall clock time and date at job start Tue Mar 31 2020 17:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35948 * 117.00094 * 2 1 4 4 C 1.38082 * 120.00191 * 0.22750 * 3 2 1 5 5 C 1.39981 * 119.83678 * 180.23357 * 4 3 2 6 6 C 1.46963 * 120.07521 * 179.78799 * 5 4 3 7 7 C 1.35023 * 119.99873 * 179.72585 * 6 5 4 8 8 C 1.46260 * 119.99963 * 180.02562 * 7 6 5 9 9 O 1.21714 * 120.00047 * 359.97438 * 8 7 6 10 10 N 1.34778 * 119.99633 * 179.97438 * 8 7 6 11 11 C 1.47067 * 136.06223 * 359.97438 * 10 8 7 12 12 C 1.53490 * 88.05062 * 207.05618 * 11 10 8 13 13 H 1.08996 * 114.20546 * 87.54733 * 12 11 10 14 14 C 1.52999 * 114.20865 * 220.37725 * 12 11 10 15 15 C 1.47069 * 136.05344 * 179.97438 * 10 8 7 16 16 H 1.09008 * 113.46481 * 267.69156 * 15 10 8 17 17 C 1.52997 * 113.46896 * 38.07217 * 15 10 8 18 18 C 1.40032 * 119.84466 * 359.51670 * 5 4 3 19 19 C 1.37651 * 119.99579 * 0.24692 * 18 5 4 20 20 C 1.39057 * 120.16512 * 0.02562 * 19 18 5 21 21 O 1.35613 * 119.91884 * 179.97438 * 20 19 18 22 22 C 1.34765 * 117.00216 * 354.38545 * 21 20 19 23 23 H 1.08001 * 119.99972 * 5.05746 * 22 21 20 24 24 C 1.38704 * 119.99802 * 185.05962 * 22 21 20 25 25 N 1.31515 * 120.00131 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99817 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.47031 * 90.00092 * 26 24 22 28 28 H 1.48501 * 109.47474 * 210.00138 * 26 24 22 29 29 H 1.48505 * 109.47232 * 330.00392 * 26 24 22 30 30 H 1.08998 * 109.47336 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47475 * 300.00661 * 1 2 3 32 32 H 1.08998 * 109.46805 * 60.00256 * 1 2 3 33 33 H 1.07997 * 120.08280 * 0.02562 * 4 3 2 34 34 H 1.07995 * 120.00438 * 359.72624 * 6 5 4 35 35 H 1.08000 * 120.00120 * 359.97438 * 7 6 5 36 36 H 1.08998 * 113.46792 * 321.87507 * 11 10 8 37 37 H 1.09008 * 113.46292 * 92.24803 * 11 10 8 38 38 H 1.09003 * 109.47460 * 40.49398 * 14 12 11 39 39 H 1.08997 * 109.47387 * 160.49684 * 14 12 11 40 40 H 1.09004 * 109.47088 * 280.49500 * 14 12 11 41 41 H 1.08994 * 109.47024 * 40.50031 * 17 15 10 42 42 H 1.09002 * 109.47229 * 160.50196 * 17 15 10 43 43 H 1.09004 * 109.47062 * 280.49279 * 17 15 10 44 44 H 1.07993 * 119.99889 * 180.22840 * 18 5 4 45 45 H 1.07997 * 119.91289 * 179.97438 * 19 18 5 46 46 H 0.97003 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 0.0047 5 6 1.9333 3.6148 -0.0002 6 6 1.1381 4.8507 0.0001 7 6 1.7561 6.0511 0.0009 8 6 0.9647 7.2811 0.0018 9 8 -0.2510 7.2225 0.0013 10 7 1.5817 8.4794 0.0031 11 6 2.9738 8.9537 0.0045 12 6 2.4832 10.2295 0.7028 13 1 2.4456 10.1577 1.7897 14 6 3.1459 11.5139 0.2008 15 6 1.1591 9.8880 0.0038 16 1 1.0737 10.3161 -0.9951 17 6 -0.0749 10.1535 0.8685 18 6 3.3321 3.6802 0.0003 19 6 4.0753 2.5216 0.0005 20 6 3.4405 1.2843 -0.0003 21 8 4.1776 0.1460 -0.0006 22 6 5.5132 0.2819 -0.1176 23 1 5.9574 1.2663 -0.1234 24 6 6.3174 -0.8425 -0.2306 25 7 5.7765 -2.0413 -0.2241 26 14 8.1688 -0.6541 -0.3935 27 1 8.7869 -0.6530 0.9568 28 1 8.7137 -1.7853 -1.1864 29 1 8.4776 0.6259 -1.0802 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.2157 2.3145 0.0089 34 1 0.0594 4.7987 -0.0003 35 1 2.8349 6.1031 0.0017 36 1 3.6379 8.3488 0.6218 37 1 3.3727 9.1316 -0.9943 38 1 3.2504 11.4692 -0.8833 39 1 2.5290 12.3708 0.4713 40 1 4.1306 11.6169 0.6568 41 1 -0.0029 9.5774 1.7909 42 1 -0.1298 11.2157 1.1069 43 1 -0.9711 9.8567 0.3236 44 1 3.8277 4.6397 0.0002 45 1 5.1540 2.5736 0.0004 46 1 6.3390 -2.8276 -0.3028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293930477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:57 Heat of formation + Delta-G solvation = -41.328715 kcal Electronic energy + Delta-G solvation = -27137.396130 eV Core-core repulsion = 23187.313549 eV Total energy + Delta-G solvation = -3950.082581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.59130 -41.29847 -39.33676 -39.20690 -38.02991 -34.64736 -33.94394 -32.63721 -31.36374 -31.23733 -30.08690 -28.13540 -27.60852 -27.16031 -24.92899 -23.85624 -23.32797 -22.11682 -20.96402 -19.97340 -19.58235 -19.32049 -17.98069 -17.75530 -17.09835 -16.70848 -16.69775 -16.32620 -16.28472 -15.59422 -15.57387 -15.30926 -15.28379 -15.05527 -14.91462 -14.54934 -13.98031 -13.92370 -13.68915 -13.36736 -13.33181 -13.23336 -12.94353 -12.71128 -12.69448 -12.66291 -12.55560 -12.41241 -12.17718 -12.16479 -12.14244 -12.02391 -11.34963 -11.09527 -11.00783 -10.81206 -10.54271 -9.72576 -9.48506 -8.55293 -8.47872 -6.12397 -0.34788 0.52054 1.07753 1.37137 1.47743 1.55406 1.87603 2.16967 2.31779 2.53141 2.84548 3.12795 3.28507 3.33600 3.54281 3.88226 3.96763 4.00231 4.09229 4.14403 4.24474 4.29786 4.33728 4.40421 4.43114 4.45929 4.51128 4.52569 4.61094 4.69452 4.72252 4.81726 4.87974 4.94417 5.05055 5.06371 5.08222 5.12758 5.20928 5.30606 5.34435 5.47107 5.49498 5.55971 5.73915 5.90026 5.96201 6.57324 6.75043 6.94557 7.17264 7.74168 8.73913 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013444 B = 0.002463 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.205363 B =11363.265719 C =13361.935331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.134 4.134 6 C 0.013 3.987 7 C -0.235 4.235 8 C 0.572 3.428 9 O -0.594 6.594 10 N -0.651 5.651 11 C 0.096 3.904 12 C -0.108 4.108 13 H 0.104 0.896 14 C -0.136 4.136 15 C 0.121 3.879 16 H 0.102 0.898 17 C -0.148 4.148 18 C -0.065 4.065 19 C -0.217 4.217 20 C 0.103 3.897 21 O -0.210 6.210 22 C -0.416 4.416 23 H 0.110 0.890 24 C -0.022 4.022 25 N -0.914 5.914 26 Si 1.022 2.978 27 H -0.262 1.262 28 H -0.274 1.274 29 H -0.247 1.247 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.042 0.958 42 H 0.093 0.907 43 H 0.040 0.960 44 H 0.154 0.846 45 H 0.139 0.861 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 25.593 0.663 25.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.007 4.007 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.007 4.007 7 C -0.255 4.255 8 C 0.367 3.633 9 O -0.478 6.478 10 N -0.384 5.384 11 C -0.026 4.026 12 C -0.127 4.127 13 H 0.122 0.878 14 C -0.193 4.193 15 C 0.019 3.981 16 H 0.119 0.881 17 C -0.206 4.206 18 C -0.083 4.083 19 C -0.236 4.236 20 C 0.050 3.950 21 O -0.116 6.116 22 C -0.491 4.491 23 H 0.128 0.872 24 C -0.221 4.221 25 N -0.551 5.551 26 Si 0.841 3.159 27 H -0.187 1.187 28 H -0.199 1.199 29 H -0.171 1.171 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.172 0.828 34 H 0.144 0.856 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.172 0.828 45 H 0.156 0.844 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.955 24.706 0.659 25.207 hybrid contribution 0.229 -0.715 -0.103 0.758 sum -4.726 23.991 0.556 24.459 Atomic orbital electron populations 1.23278 0.77103 1.05015 1.02051 1.86189 1.22937 1.26771 1.89863 1.18369 0.89157 0.85777 1.07358 1.21238 1.00086 0.90011 1.03880 1.18509 0.93036 0.91913 1.10031 1.22118 0.99237 0.90385 0.88965 1.22703 1.00864 0.90841 1.11100 1.18068 0.86602 0.83245 0.75413 1.90757 1.15664 1.87552 1.53795 1.49773 1.11562 1.04789 1.72302 1.23388 0.83302 0.93685 1.02186 1.23012 0.93739 0.95397 1.00567 0.87792 1.21633 1.01070 0.94927 1.01686 1.23051 0.96088 0.78926 1.00036 0.88057 1.21856 0.96953 1.02757 0.99038 1.21254 0.92544 0.97854 0.96625 1.21024 1.01132 0.90706 1.10746 1.19565 0.89515 0.88148 0.97735 1.83980 1.20273 1.27747 1.79578 1.21996 0.78783 0.95953 1.52400 0.87234 1.26703 1.06251 0.93516 0.95603 1.70205 1.38576 0.98856 1.47445 0.84545 0.73006 0.79200 0.79198 1.18716 1.19863 1.17062 0.87146 0.91629 0.91695 0.82791 0.85632 0.83697 0.89227 0.87877 0.91603 0.91212 0.90844 0.93854 0.88837 0.94032 0.82833 0.84377 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.70 16 2 O -0.34 -15.29 10.28 -78.99 -0.81 -16.10 16 3 C 0.04 1.70 6.70 22.57 0.15 1.85 16 4 C -0.13 -4.69 8.77 22.66 0.20 -4.50 16 5 C -0.13 -4.38 5.87 -20.13 -0.12 -4.49 16 6 C 0.01 0.37 9.45 23.82 0.23 0.59 16 7 C -0.23 -6.02 9.25 23.62 0.22 -5.80 16 8 C 0.57 16.01 7.89 86.33 0.68 16.69 16 9 O -0.59 -21.01 16.44 -4.39 -0.07 -21.08 16 10 N -0.65 -13.30 3.57 -838.22 -2.99 -16.29 16 11 C 0.10 1.14 7.88 83.18 0.66 1.79 16 12 C -0.11 -1.01 4.25 -10.44 -0.04 -1.06 16 13 H 0.10 1.02 8.12 -2.39 -0.02 1.00 16 14 C -0.14 -0.65 9.74 71.98 0.70 0.05 16 15 C 0.12 1.84 4.26 41.82 0.18 2.02 16 16 H 0.10 1.32 8.10 -2.38 -0.02 1.30 16 17 C -0.15 -2.52 9.25 71.98 0.67 -1.86 16 18 C -0.06 -2.15 9.40 22.57 0.21 -1.94 16 19 C -0.22 -9.02 9.14 22.33 0.20 -8.81 16 20 C 0.10 5.14 6.67 22.80 0.15 5.29 16 21 O -0.21 -12.73 9.52 -6.60 -0.06 -12.79 16 22 C -0.42 -23.69 9.48 67.93 0.64 -23.04 16 23 H 0.11 5.55 5.18 -2.91 -0.02 5.54 16 24 C -0.02 -1.24 5.49 84.85 0.47 -0.78 16 25 N -0.91 -55.97 13.67 21.62 0.30 -55.68 16 26 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 27 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 29 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 30 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 31 H 0.07 1.65 7.65 -2.39 -0.02 1.64 16 32 H 0.06 1.65 7.67 -2.39 -0.02 1.63 16 33 H 0.15 4.38 6.28 -2.91 -0.02 4.36 16 34 H 0.13 3.60 7.52 -2.91 -0.02 3.58 16 35 H 0.15 3.04 5.97 -2.91 -0.02 3.02 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.10 0.90 8.03 -2.38 -0.02 0.88 16 38 H 0.06 0.27 8.03 -2.39 -0.02 0.25 16 39 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 40 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.15 3.84 6.15 -2.91 -0.02 3.82 16 45 H 0.14 5.60 5.61 -2.91 -0.02 5.58 16 46 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.28 387.29 5.68 -74.60 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.99 Total: 26.05 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 6.30 Total: -22.30 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -2.70 Total: -71.97 kcal Atomic # 8 Polarization: -49.02 SS G_CDS: -0.95 Total: -49.97 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -80.28 5.68 -74.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.269 kcal (2) G-P(sol) polarization free energy of solvation -80.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds