Wall clock time and date at job start Tue Mar 31 2020 17:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 117.00649 * 2 1 4 4 C 1.38078 * 119.99788 * 0.02562 * 3 2 1 5 5 C 1.39976 * 119.83758 * 180.02562 * 4 3 2 6 6 C 1.46968 * 120.07542 * 179.97438 * 5 4 3 7 7 C 1.35023 * 119.99680 * 180.02562 * 6 5 4 8 8 C 1.46250 * 120.00076 * 179.72599 * 7 6 5 9 9 O 1.21722 * 120.00149 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00215 * 179.97438 * 8 7 6 11 11 C 1.47060 * 136.05505 * 0.02562 * 10 8 7 12 12 C 1.53497 * 87.98412 * 207.08052 * 11 10 8 13 13 H 1.09002 * 114.20845 * 220.14294 * 12 11 10 14 14 C 1.53007 * 114.20272 * 87.52211 * 12 11 10 15 15 C 1.47071 * 136.05611 * 179.62535 * 10 8 7 16 16 H 1.08992 * 113.46594 * 267.69605 * 15 10 8 17 17 C 1.53001 * 113.46483 * 38.13924 * 15 10 8 18 18 C 1.40024 * 119.84294 * 0.26068 * 5 4 3 19 19 C 1.37652 * 120.00067 * 359.48060 * 18 5 4 20 20 C 1.39057 * 120.16010 * 0.51767 * 19 18 5 21 21 O 1.35610 * 119.92332 * 179.71604 * 20 19 18 22 22 C 1.34759 * 116.99961 * 354.38072 * 21 20 19 23 23 H 1.08000 * 120.00098 * 5.05915 * 22 21 20 24 24 C 1.38699 * 120.00309 * 185.06511 * 22 21 20 25 25 N 1.31520 * 120.00474 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00026 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47204 * 90.00094 * 26 24 22 28 28 H 1.48503 * 109.47595 * 210.00157 * 26 24 22 29 29 H 1.48505 * 109.47105 * 330.00521 * 26 24 22 30 30 H 1.09007 * 109.46348 * 300.00109 * 1 2 3 31 31 H 1.09003 * 109.47035 * 59.99215 * 1 2 3 32 32 H 1.08992 * 109.47713 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.07674 * 0.04628 * 4 3 2 34 34 H 1.07998 * 120.00317 * 359.72632 * 6 5 4 35 35 H 1.08003 * 120.00404 * 359.72899 * 7 6 5 36 36 H 1.08997 * 113.47320 * 321.86518 * 11 10 8 37 37 H 1.09001 * 113.47211 * 92.24904 * 11 10 8 38 38 H 1.08993 * 109.47386 * 79.50649 * 14 12 11 39 39 H 1.09005 * 109.46579 * 199.50595 * 14 12 11 40 40 H 1.08999 * 109.46924 * 319.50265 * 14 12 11 41 41 H 1.08992 * 109.47269 * 40.49427 * 17 15 10 42 42 H 1.08997 * 109.46584 * 160.49138 * 17 15 10 43 43 H 1.08998 * 109.46683 * 280.48856 * 17 15 10 44 44 H 1.07998 * 119.99935 * 179.72080 * 18 5 4 45 45 H 1.07997 * 119.91859 * 180.23236 * 19 18 5 46 46 H 0.96998 * 120.00504 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3694 0.0005 5 6 1.9335 3.6147 0.0000 6 6 1.1383 4.8506 0.0000 7 6 1.7564 6.0511 -0.0011 8 6 0.9652 7.2810 -0.0071 9 8 -0.2506 7.2226 -0.0117 10 7 1.5822 8.4793 -0.0076 11 6 2.9742 8.9535 -0.0039 12 6 2.4803 10.2306 0.6899 13 1 2.9556 11.1448 0.3344 14 6 2.4223 10.1332 2.2158 15 6 1.1596 9.8880 -0.0194 16 1 1.0831 10.3098 -1.0215 17 6 -0.0811 10.1590 0.8339 18 6 3.3322 3.6801 -0.0066 19 6 4.0754 2.5215 -0.0018 20 6 3.4406 1.2842 -0.0011 21 8 4.1776 0.1458 -0.0022 22 6 5.5130 0.2816 -0.1213 23 1 5.9572 1.2660 -0.1282 24 6 6.3170 -0.8428 -0.2353 25 7 7.6203 -0.7103 -0.3521 26 14 5.5488 -2.5455 -0.2229 27 1 5.2155 -2.9483 -1.6128 28 1 6.5096 -3.5179 0.3573 29 1 4.3106 -2.5239 0.5966 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2158 2.3144 0.0017 34 1 0.0596 4.7988 -0.0041 35 1 2.8352 6.1031 0.0025 36 1 3.6366 8.3505 0.6172 37 1 3.3760 9.1285 -1.0019 38 1 3.4223 10.2705 2.6269 39 1 1.7603 10.9071 2.6043 40 1 2.0428 9.1526 2.5031 41 1 -0.0164 9.5888 1.7605 42 1 -0.1377 11.2227 1.0651 43 1 -0.9729 9.8587 0.2839 44 1 3.8279 4.6396 -0.0116 45 1 5.1541 2.5735 -0.0031 46 1 8.1826 -1.4967 -0.4314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293930484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:06 Heat of formation + Delta-G solvation = -17.526552 kcal Electronic energy + Delta-G solvation = -27356.065298 eV Core-core repulsion = 23407.014857 eV Total energy + Delta-G solvation = -3949.050442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82700 -39.87578 -38.12070 -37.86515 -36.63414 -33.09258 -32.44661 -31.66441 -30.27015 -29.85235 -28.92424 -27.43545 -26.57690 -25.42245 -23.80187 -23.04956 -21.88058 -21.07657 -19.52290 -18.33600 -18.09777 -17.93754 -17.18220 -16.47970 -16.07484 -15.63546 -15.40142 -15.36726 -14.70722 -14.52343 -14.09072 -13.98474 -13.94946 -13.80530 -13.70143 -13.44019 -13.26498 -12.53850 -12.44462 -12.34939 -12.12824 -11.98494 -11.94408 -11.92928 -11.77611 -11.58887 -11.41767 -11.09991 -10.99276 -10.89514 -10.74612 -10.53795 -10.30410 -9.70322 -9.59472 -9.46845 -8.92757 -8.75866 -8.09168 -7.05935 -6.58823 -4.18752 0.94117 1.99511 2.44270 2.77454 3.16499 3.21021 3.38416 3.51808 3.77699 3.91822 4.14807 4.36821 4.40277 4.56426 4.63659 4.76516 4.95006 4.95499 5.02960 5.12608 5.14615 5.18099 5.28676 5.34661 5.41805 5.43529 5.47403 5.50822 5.55336 5.60237 5.64368 5.69765 5.75612 5.84981 5.90223 5.94104 6.06426 6.14052 6.34837 6.40494 6.52188 6.78019 6.90493 7.14994 7.31118 7.49174 7.71916 7.78053 7.97708 8.29206 8.74894 9.36777 10.46967 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.002427 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.568638 B =11534.245384 C =12908.478246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.309 6.309 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.154 4.154 6 C 0.028 3.972 7 C -0.263 4.263 8 C 0.583 3.417 9 O -0.555 6.555 10 N -0.643 5.643 11 C 0.101 3.899 12 C -0.127 4.127 13 H 0.096 0.904 14 C -0.131 4.131 15 C 0.132 3.868 16 H 0.089 0.911 17 C -0.152 4.152 18 C -0.063 4.063 19 C -0.209 4.209 20 C 0.155 3.845 21 O -0.189 6.189 22 C -0.388 4.388 23 H 0.111 0.889 24 C 0.067 3.933 25 N -0.866 5.866 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.281 1.281 29 H -0.254 1.254 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.144 0.856 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.036 17.955 1.763 20.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.223 6.223 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.155 4.155 6 C 0.008 3.992 7 C -0.284 4.284 8 C 0.379 3.621 9 O -0.435 6.435 10 N -0.379 5.379 11 C -0.022 4.022 12 C -0.146 4.146 13 H 0.114 0.886 14 C -0.188 4.188 15 C 0.028 3.972 16 H 0.107 0.893 17 C -0.210 4.210 18 C -0.082 4.082 19 C -0.229 4.229 20 C 0.100 3.900 21 O -0.092 6.092 22 C -0.463 4.463 23 H 0.128 0.872 24 C -0.138 4.138 25 N -0.502 5.502 26 Si 0.730 3.270 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.178 1.178 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.504 17.117 1.760 20.160 hybrid contribution -0.149 -0.509 -0.204 0.569 sum -10.652 16.607 1.556 19.791 Atomic orbital electron populations 1.22936 0.79883 1.03138 1.00675 1.86174 1.19871 1.26366 1.89882 1.18035 0.89259 0.84633 1.07398 1.20892 0.98717 0.90833 1.05131 1.18238 0.92830 0.91455 1.13019 1.22225 0.99169 0.90857 0.86950 1.22457 0.99902 0.91358 1.14640 1.17934 0.86991 0.82032 0.75175 1.90773 1.14028 1.86794 1.51929 1.49625 1.09221 1.04676 1.74367 1.23034 0.85141 0.93450 1.00602 1.22961 0.96748 0.98260 0.96631 0.88601 1.21517 1.02010 1.02525 0.92774 1.22711 0.95112 0.80482 0.98860 0.89319 1.21888 0.97383 1.01260 1.00439 1.20975 0.92430 0.97557 0.97214 1.20973 1.01233 0.90512 1.10137 1.18613 0.87699 0.87036 0.96629 1.83586 1.20448 1.27491 1.77663 1.20899 0.77192 0.97186 1.50989 0.87202 1.24514 0.94535 0.99740 0.95057 1.69621 1.03184 1.32053 1.45331 0.86168 0.79885 0.81372 0.79623 1.19630 1.20617 1.17758 0.93260 0.93250 0.88934 0.85654 0.85870 0.85863 0.90076 0.89748 0.91985 0.91949 0.92144 0.91838 0.91680 0.91867 0.86424 0.83871 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.39 16 2 O -0.31 -6.06 10.28 -34.20 -0.35 -6.42 16 3 C 0.05 1.05 6.70 -39.12 -0.26 0.78 16 4 C -0.14 -2.35 8.77 -38.99 -0.34 -2.69 16 5 C -0.15 -2.60 5.87 -105.04 -0.62 -3.22 16 6 C 0.03 0.42 9.45 -37.19 -0.35 0.07 16 7 C -0.26 -3.75 9.24 -37.51 -0.35 -4.10 16 8 C 0.58 8.69 7.89 -13.04 -0.10 8.59 16 9 O -0.55 -9.97 16.43 5.17 0.08 -9.88 16 10 N -0.64 -7.38 3.33 -178.93 -0.60 -7.98 16 11 C 0.10 0.80 7.87 -8.50 -0.07 0.73 16 12 C -0.13 -0.83 4.69 -89.96 -0.42 -1.26 16 13 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 14 C -0.13 -0.89 8.42 37.16 0.31 -0.58 16 15 C 0.13 1.17 4.61 -72.24 -0.33 0.84 16 16 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 17 C -0.15 -1.40 8.32 37.16 0.31 -1.09 16 18 C -0.06 -1.10 9.40 -39.13 -0.37 -1.47 16 19 C -0.21 -4.29 9.14 -39.49 -0.36 -4.65 16 20 C 0.16 3.53 6.67 -38.76 -0.26 3.28 16 21 O -0.19 -4.93 8.35 -13.93 -0.12 -5.04 16 22 C -0.39 -10.53 9.94 30.90 0.31 -10.22 16 23 H 0.11 2.98 5.42 -52.49 -0.28 2.70 16 24 C 0.07 1.82 5.49 -17.51 -0.10 1.72 16 25 N -0.87 -24.02 13.96 55.48 0.77 -23.25 16 26 Si 0.90 21.28 28.62 -169.99 -4.86 16.41 16 27 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 31 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.13 1.79 6.28 -52.49 -0.33 1.46 16 34 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 35 H 0.12 1.58 5.97 -52.48 -0.31 1.26 16 36 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.38 7.77 -51.93 -0.40 -0.03 16 40 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 41 H 0.06 0.67 7.16 -51.93 -0.37 0.30 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.12 1.72 6.15 -52.49 -0.32 1.40 16 45 H 0.14 3.00 5.62 -52.49 -0.29 2.70 16 46 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -31.91 382.88 -7.73 -39.64 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.42 Total: 2.62 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.01 Total: -11.87 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.18 Total: -31.22 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.38 Total: -21.34 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.91 -7.73 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.110 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds