Wall clock time and date at job start Tue Mar 31 2020 17:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35952 * 117.00649 * 2 1 4 4 C 1.38078 * 119.99788 * 0.02562 * 3 2 1 5 5 C 1.39976 * 119.83758 * 180.02562 * 4 3 2 6 6 C 1.46968 * 120.07542 * 179.97438 * 5 4 3 7 7 C 1.35023 * 119.99680 * 180.02562 * 6 5 4 8 8 C 1.46250 * 120.00076 * 179.72599 * 7 6 5 9 9 O 1.21722 * 120.00149 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00215 * 179.97438 * 8 7 6 11 11 C 1.47060 * 136.05505 * 0.02562 * 10 8 7 12 12 C 1.53497 * 87.98412 * 207.08052 * 11 10 8 13 13 H 1.09002 * 114.20845 * 220.14294 * 12 11 10 14 14 C 1.53007 * 114.20272 * 87.52211 * 12 11 10 15 15 C 1.47071 * 136.05611 * 179.62535 * 10 8 7 16 16 H 1.08992 * 113.46594 * 267.69605 * 15 10 8 17 17 C 1.53001 * 113.46483 * 38.13924 * 15 10 8 18 18 C 1.40024 * 119.84294 * 0.26068 * 5 4 3 19 19 C 1.37652 * 120.00067 * 359.48060 * 18 5 4 20 20 C 1.39057 * 120.16010 * 0.51767 * 19 18 5 21 21 O 1.35610 * 119.92332 * 179.71604 * 20 19 18 22 22 C 1.34759 * 116.99961 * 354.38072 * 21 20 19 23 23 H 1.08000 * 120.00098 * 5.05915 * 22 21 20 24 24 C 1.38699 * 120.00309 * 185.06511 * 22 21 20 25 25 N 1.31520 * 120.00474 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00026 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47204 * 90.00094 * 26 24 22 28 28 H 1.48503 * 109.47595 * 210.00157 * 26 24 22 29 29 H 1.48505 * 109.47105 * 330.00521 * 26 24 22 30 30 H 1.09007 * 109.46348 * 300.00109 * 1 2 3 31 31 H 1.09003 * 109.47035 * 59.99215 * 1 2 3 32 32 H 1.08992 * 109.47713 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.07674 * 0.04628 * 4 3 2 34 34 H 1.07998 * 120.00317 * 359.72632 * 6 5 4 35 35 H 1.08003 * 120.00404 * 359.72899 * 7 6 5 36 36 H 1.08997 * 113.47320 * 321.86518 * 11 10 8 37 37 H 1.09001 * 113.47211 * 92.24904 * 11 10 8 38 38 H 1.08993 * 109.47386 * 79.50649 * 14 12 11 39 39 H 1.09005 * 109.46579 * 199.50595 * 14 12 11 40 40 H 1.08999 * 109.46924 * 319.50265 * 14 12 11 41 41 H 1.08992 * 109.47269 * 40.49427 * 17 15 10 42 42 H 1.08997 * 109.46584 * 160.49138 * 17 15 10 43 43 H 1.08998 * 109.46683 * 280.48856 * 17 15 10 44 44 H 1.07998 * 119.99935 * 179.72080 * 18 5 4 45 45 H 1.07997 * 119.91859 * 180.23236 * 19 18 5 46 46 H 0.96998 * 120.00504 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2944 2.3694 0.0005 5 6 1.9335 3.6147 0.0000 6 6 1.1383 4.8506 0.0000 7 6 1.7564 6.0511 -0.0011 8 6 0.9652 7.2810 -0.0071 9 8 -0.2506 7.2226 -0.0117 10 7 1.5822 8.4793 -0.0076 11 6 2.9742 8.9535 -0.0039 12 6 2.4803 10.2306 0.6899 13 1 2.9556 11.1448 0.3344 14 6 2.4223 10.1332 2.2158 15 6 1.1596 9.8880 -0.0194 16 1 1.0831 10.3098 -1.0215 17 6 -0.0811 10.1590 0.8339 18 6 3.3322 3.6801 -0.0066 19 6 4.0754 2.5215 -0.0018 20 6 3.4406 1.2842 -0.0011 21 8 4.1776 0.1458 -0.0022 22 6 5.5130 0.2816 -0.1213 23 1 5.9572 1.2660 -0.1282 24 6 6.3170 -0.8428 -0.2353 25 7 7.6203 -0.7103 -0.3521 26 14 5.5488 -2.5455 -0.2229 27 1 5.2155 -2.9483 -1.6128 28 1 6.5096 -3.5179 0.3573 29 1 4.3106 -2.5239 0.5966 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2158 2.3144 0.0017 34 1 0.0596 4.7988 -0.0041 35 1 2.8352 6.1031 0.0025 36 1 3.6366 8.3505 0.6172 37 1 3.3760 9.1285 -1.0019 38 1 3.4223 10.2705 2.6269 39 1 1.7603 10.9071 2.6043 40 1 2.0428 9.1526 2.5031 41 1 -0.0164 9.5888 1.7605 42 1 -0.1377 11.2227 1.0651 43 1 -0.9729 9.8587 0.2839 44 1 3.8279 4.6396 -0.0116 45 1 5.1541 2.5735 -0.0031 46 1 8.1826 -1.4967 -0.4314 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293930484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:05 Heat of formation + Delta-G solvation = -36.380225 kcal Electronic energy + Delta-G solvation = -27356.882855 eV Core-core repulsion = 23407.014857 eV Total energy + Delta-G solvation = -3949.867999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.67056 -41.40452 -39.46149 -39.22409 -38.10001 -34.69435 -34.12440 -32.54978 -31.34555 -30.95824 -30.27318 -28.35016 -27.79123 -27.13439 -24.84727 -24.04439 -23.36305 -22.27298 -20.61046 -19.94119 -19.53564 -19.13960 -18.25530 -17.82299 -17.29533 -16.84125 -16.75398 -16.44453 -16.30277 -15.63083 -15.57711 -15.44812 -15.11031 -15.01011 -14.93426 -14.60081 -14.26104 -14.12450 -13.88007 -13.42561 -13.32673 -13.09380 -13.00939 -12.77146 -12.74783 -12.63460 -12.57341 -12.48987 -12.16935 -12.13293 -12.09466 -12.02466 -11.44082 -11.18935 -11.07955 -10.78224 -10.63606 -9.71491 -9.51489 -8.63145 -8.53860 -6.21104 -0.39129 0.46494 1.03662 1.30321 1.34621 1.52583 1.89050 2.27093 2.30673 2.46124 2.76941 2.91986 3.07795 3.28826 3.50691 3.85066 3.88252 4.02516 4.07576 4.11043 4.26669 4.27837 4.31244 4.42572 4.44620 4.46330 4.46872 4.52852 4.57568 4.71376 4.72137 4.84747 4.88203 4.92539 4.99260 5.03665 5.07426 5.11412 5.23300 5.28054 5.40114 5.45866 5.51917 5.57156 5.70410 5.74381 5.98288 6.52045 6.76109 6.80346 7.17938 7.54586 8.56653 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017295 B = 0.002427 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.568638 B =11534.245384 C =12908.478246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.340 6.340 3 C 0.050 3.950 4 C -0.133 4.133 5 C -0.122 4.122 6 C 0.010 3.990 7 C -0.231 4.231 8 C 0.571 3.429 9 O -0.593 6.593 10 N -0.647 5.647 11 C 0.094 3.906 12 C -0.108 4.108 13 H 0.130 0.870 14 C -0.132 4.132 15 C 0.120 3.880 16 H 0.105 0.895 17 C -0.148 4.148 18 C -0.071 4.071 19 C -0.207 4.207 20 C 0.110 3.890 21 O -0.228 6.228 22 C -0.399 4.399 23 H 0.092 0.908 24 C 0.018 3.982 25 N -0.913 5.913 26 Si 0.962 3.038 27 H -0.267 1.267 28 H -0.264 1.264 29 H -0.267 1.267 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.161 0.839 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.039 0.961 44 H 0.150 0.850 45 H 0.129 0.871 46 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.852 21.217 1.686 24.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.005 3.995 4 C -0.152 4.152 5 C -0.122 4.122 6 C -0.010 4.010 7 C -0.252 4.252 8 C 0.366 3.634 9 O -0.477 6.477 10 N -0.381 5.381 11 C -0.028 4.028 12 C -0.126 4.126 13 H 0.148 0.852 14 C -0.189 4.189 15 C 0.018 3.982 16 H 0.123 0.877 17 C -0.206 4.206 18 C -0.089 4.089 19 C -0.226 4.226 20 C 0.059 3.941 21 O -0.134 6.134 22 C -0.475 4.475 23 H 0.109 0.891 24 C -0.182 4.182 25 N -0.553 5.553 26 Si 0.785 3.215 27 H -0.193 1.193 28 H -0.189 1.189 29 H -0.192 1.192 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.178 0.822 34 H 0.148 0.852 35 H 0.160 0.840 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.168 0.832 45 H 0.147 0.853 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.340 20.457 1.686 23.950 hybrid contribution 0.011 -0.915 -0.151 0.927 sum -12.329 19.542 1.535 23.157 Atomic orbital electron populations 1.23332 0.76752 1.05291 1.02271 1.86141 1.23190 1.26370 1.89806 1.18234 0.88623 0.85977 1.06627 1.21277 1.00375 0.89780 1.03744 1.18556 0.92751 0.92237 1.08701 1.22142 0.99377 0.90255 0.89252 1.22757 1.00838 0.91123 1.10472 1.18041 0.86602 0.83269 0.75520 1.90758 1.15573 1.87565 1.53817 1.49831 1.11451 1.04801 1.72026 1.23387 0.83333 0.93837 1.02214 1.22932 0.94711 0.98986 0.96001 0.85192 1.21538 1.02871 1.01304 0.93221 1.23079 0.96141 0.78910 1.00091 0.87699 1.21850 0.96728 1.02704 0.99296 1.21241 0.92735 0.97758 0.97138 1.21048 1.00946 0.91152 1.09477 1.19223 0.89060 0.87208 0.98585 1.83552 1.19486 1.28797 1.81586 1.20825 0.78350 0.96668 1.51672 0.89069 1.25168 0.94957 1.02718 0.95356 1.69685 1.04048 1.32860 1.48672 0.85334 0.78644 0.78135 0.79395 1.19252 1.18898 1.19201 0.91512 0.91534 0.86798 0.82184 0.85227 0.83986 0.89601 0.87580 0.90638 0.91142 0.94745 0.93600 0.88919 0.94197 0.83228 0.85298 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -13.25 10.28 -79.04 -0.81 -14.06 16 3 C 0.05 2.03 6.70 22.57 0.15 2.18 16 4 C -0.13 -4.28 8.77 22.65 0.20 -4.08 16 5 C -0.12 -3.79 5.87 -20.14 -0.12 -3.91 16 6 C 0.01 0.26 9.45 23.82 0.23 0.49 16 7 C -0.23 -5.85 9.24 23.61 0.22 -5.63 16 8 C 0.57 15.65 7.89 86.32 0.68 16.33 16 9 O -0.59 -20.50 16.43 -4.42 -0.07 -20.58 16 10 N -0.65 -12.92 3.33 -838.20 -2.79 -15.71 16 11 C 0.09 1.10 7.87 83.19 0.65 1.75 16 12 C -0.11 -0.95 4.69 -10.36 -0.05 -0.99 16 13 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 14 C -0.13 -1.37 8.42 71.98 0.61 -0.76 16 15 C 0.12 1.74 4.61 41.89 0.19 1.93 16 16 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 17 C -0.15 -2.44 8.32 71.98 0.60 -1.84 16 18 C -0.07 -2.34 9.40 22.56 0.21 -2.13 16 19 C -0.21 -8.68 9.14 22.33 0.20 -8.48 16 20 C 0.11 5.19 6.67 22.80 0.15 5.34 16 21 O -0.23 -12.54 8.35 -6.50 -0.05 -12.59 16 22 C -0.40 -23.12 9.94 67.93 0.68 -22.44 16 23 H 0.09 5.37 5.42 -2.91 -0.02 5.36 16 24 C 0.02 1.02 5.49 84.85 0.47 1.49 16 25 N -0.91 -53.35 13.96 21.62 0.30 -53.05 16 26 Si 0.96 45.92 28.62 68.60 1.96 47.89 16 27 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 28 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 29 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 30 H 0.07 1.40 7.66 -2.38 -0.02 1.39 16 31 H 0.07 1.40 7.66 -2.39 -0.02 1.39 16 32 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.16 3.99 6.28 -2.91 -0.02 3.97 16 34 H 0.13 3.49 7.52 -2.91 -0.02 3.47 16 35 H 0.14 3.03 5.97 -2.91 -0.02 3.01 16 36 H 0.09 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.63 7.77 -2.38 -0.02 0.61 16 40 H 0.03 0.54 7.67 -2.39 -0.02 0.52 16 41 H 0.04 0.91 7.16 -2.39 -0.02 0.89 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.15 3.91 6.15 -2.91 -0.02 3.89 16 45 H 0.13 5.74 5.62 -2.91 -0.02 5.72 16 46 H 0.29 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -75.25 382.88 5.71 -69.54 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.00 Total: 17.76 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 6.18 Total: -19.19 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -2.49 Total: -68.76 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.94 Total: -47.23 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.96 Total: 47.89 kcal Total: -75.25 5.71 -69.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293930484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.162 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds