Wall clock time and date at job start Tue Mar 31 2020 16:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47338 * 2 1 4 4 N 1.46495 * 109.46990 * 120.00180 * 2 1 3 5 5 C 1.34774 * 120.00249 * 124.94782 * 4 2 1 6 6 O 1.21724 * 120.00611 * 174.71140 * 5 4 2 7 7 C 1.46257 * 120.00152 * 354.70565 * 5 4 2 8 8 C 1.35016 * 120.00364 * 185.13476 * 7 5 4 9 9 C 1.46961 * 120.00043 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10264 * 359.72568 * 9 8 7 11 11 C 1.37594 * 119.89843 * 179.69363 * 10 9 8 12 12 C 1.39175 * 120.10164 * 0.60908 * 11 10 9 13 13 O 1.35575 * 119.89905 * 179.69768 * 12 11 10 14 14 C 1.34781 * 116.99889 * 174.51431 * 13 12 11 15 15 H 1.07999 * 120.00268 * 5.04484 * 14 13 12 16 16 C 1.38722 * 119.99888 * 185.03901 * 14 13 12 17 17 N 1.31506 * 119.99755 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99839 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47193 * 89.99393 * 18 16 14 20 20 H 1.48506 * 109.46863 * 209.99599 * 18 16 14 21 21 H 1.48501 * 109.47304 * 329.99421 * 18 16 14 22 22 C 1.39169 * 120.20227 * 359.66843 * 12 11 10 23 23 C 1.37597 * 120.10336 * 0.02562 * 22 12 11 24 24 C 1.46499 * 120.00062 * 304.94553 * 4 2 1 25 25 C 1.54035 * 113.81755 * 141.49176 * 24 4 2 26 26 O 1.44442 * 85.42458 * 91.81109 * 25 24 4 27 27 C 1.44176 * 93.38345 * 24.08917 * 26 25 24 28 28 H 1.09000 * 109.47308 * 300.00164 * 1 2 3 29 29 H 1.09004 * 109.46913 * 59.99897 * 1 2 3 30 30 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47308 * 239.99836 * 2 1 3 32 32 H 1.08998 * 109.47480 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47375 * 300.00206 * 3 2 1 34 34 H 1.09002 * 109.47553 * 59.99850 * 3 2 1 35 35 H 1.08002 * 119.99368 * 5.14011 * 7 5 4 36 36 H 1.08002 * 120.00268 * 0.02562 * 8 7 5 37 37 H 1.08005 * 120.04615 * 0.02562 * 10 9 8 38 38 H 1.08007 * 119.95113 * 180.27601 * 11 10 9 39 39 H 0.97006 * 119.99413 * 180.02562 * 17 16 14 40 40 H 1.08007 * 119.95299 * 180.02562 * 22 12 11 41 41 H 1.08002 * 120.05081 * 180.02562 * 23 22 12 42 42 H 1.08998 * 113.00027 * 9.67210 * 24 4 2 43 43 H 1.09002 * 113.86573 * 205.91429 * 25 24 4 44 44 H 1.09001 * 113.86791 * 337.62281 * 25 24 4 45 45 H 1.08993 * 113.86557 * 221.77089 * 27 26 25 46 46 H 1.09001 * 113.98121 * 90.06997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8732 -1.7254 1.0750 6 8 3.3540 -2.2374 2.0692 7 6 3.2234 -2.2334 -0.2510 8 6 3.9968 -3.3337 -0.3700 9 6 4.3490 -3.8438 -1.7025 10 6 3.8791 -3.1936 -2.8501 11 6 4.2167 -3.6711 -4.0956 12 6 5.0135 -4.8058 -4.2158 13 8 5.3386 -5.2762 -5.4450 14 6 6.2039 -6.3083 -5.4961 15 1 6.5418 -6.7754 -4.5828 16 6 6.6605 -6.7707 -6.7217 17 7 7.5052 -7.7774 -6.7714 18 14 6.0764 -5.9625 -8.3013 19 1 6.9953 -4.8517 -8.6581 20 1 6.0646 -6.9662 -9.3957 21 1 4.7052 -5.4271 -8.1057 22 6 5.4782 -5.4586 -3.0780 23 6 5.1509 -4.9848 -1.8283 24 6 1.5773 -0.2565 2.5240 25 6 1.3280 -1.4162 3.5067 26 8 2.7058 -1.2282 3.8974 27 6 2.7310 0.1460 3.4619 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.8634 -1.7282 -1.1351 36 1 4.3566 -3.8391 0.5141 37 1 3.2569 -2.3156 -2.7578 38 1 3.8583 -3.1677 -4.9815 39 1 7.8247 -8.1004 -7.6284 40 1 6.0966 -6.3387 -3.1759 41 1 5.5123 -5.4919 -0.9459 42 1 0.7662 0.4708 2.4867 43 1 0.6107 -1.1814 4.2931 44 1 1.1326 -2.3720 3.0205 45 1 3.6459 0.4265 2.9402 46 1 2.4435 0.8605 4.2332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295870141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:08 Heat of formation + Delta-G solvation = -12.703797 kcal Electronic energy + Delta-G solvation = -27680.166615 eV Core-core repulsion = 23731.325303 eV Total energy + Delta-G solvation = -3948.841312 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.25882 -39.38130 -38.54584 -37.05330 -36.60471 -33.22152 -32.45997 -31.72150 -30.53971 -29.31676 -27.98281 -27.60167 -26.58676 -25.65429 -23.70077 -22.35943 -22.05186 -21.47202 -19.68951 -18.35705 -17.94450 -17.53652 -17.40162 -16.49705 -15.87241 -15.71568 -15.27010 -15.01702 -14.83908 -14.78310 -14.34373 -14.15730 -14.06301 -13.95193 -13.64889 -13.35503 -12.85096 -12.75846 -12.71415 -12.56484 -12.41745 -12.27146 -11.92802 -11.90575 -11.83920 -11.46370 -11.20231 -11.09805 -11.01858 -10.74001 -10.65886 -10.27695 -9.80272 -9.62885 -9.54827 -9.37159 -8.93937 -8.80634 -8.47392 -7.24061 -6.60421 -4.24263 1.00556 2.02918 2.48067 2.72679 3.11418 3.15307 3.28422 3.47504 3.58670 4.08528 4.12248 4.38373 4.42802 4.59996 4.63964 4.78270 4.80530 4.87375 4.93848 4.97704 5.04271 5.21190 5.22321 5.22828 5.42174 5.42327 5.45381 5.46934 5.50657 5.60117 5.64275 5.78919 5.86583 5.87723 5.93893 6.03212 6.19374 6.29610 6.33243 6.51685 6.54096 6.67510 6.92404 7.08792 7.15992 7.37841 7.41496 7.62767 7.84075 8.34705 8.72902 9.33130 10.45891 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002206 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.812663 B =12687.690631 C =13540.742052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.598 5.598 5 C 0.545 3.455 6 O -0.511 6.511 7 C -0.279 4.279 8 C 0.034 3.966 9 C -0.188 4.188 10 C -0.046 4.046 11 C -0.199 4.199 12 C 0.173 3.827 13 O -0.203 6.203 14 C -0.392 4.392 15 H 0.111 0.889 16 C 0.066 3.934 17 N -0.867 5.867 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.258 1.258 22 C -0.229 4.229 23 C -0.037 4.037 24 C 0.086 3.914 25 C 0.030 3.970 26 O -0.339 6.339 27 C 0.019 3.981 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.283 0.717 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 17.501 13.622 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.332 5.332 5 C 0.337 3.663 6 O -0.387 6.387 7 C -0.300 4.300 8 C 0.014 3.986 9 C -0.189 4.189 10 C -0.064 4.064 11 C -0.218 4.218 12 C 0.119 3.881 13 O -0.105 6.105 14 C -0.467 4.467 15 H 0.128 0.872 16 C -0.139 4.139 17 N -0.503 5.503 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.182 1.182 22 C -0.248 4.248 23 C -0.055 4.055 24 C -0.020 4.020 25 C -0.048 4.048 26 O -0.257 6.257 27 C -0.060 4.060 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.611 16.921 13.851 25.757 hybrid contribution -0.260 0.370 -0.845 0.958 sum -13.870 17.292 13.006 25.701 Atomic orbital electron populations 1.22191 0.94841 1.02735 1.02393 1.21318 0.94455 0.93492 0.88440 1.22200 1.01994 0.95678 1.02308 1.47701 1.47226 1.33482 1.04791 1.18522 0.78232 0.79300 0.90221 1.90961 1.51481 1.57635 1.38665 1.22609 1.09296 1.02551 0.95552 1.22307 0.88541 0.91762 0.95963 1.18528 1.07874 1.00607 0.91887 1.20851 0.96778 0.97660 0.91130 1.20135 1.05856 0.98203 0.97634 1.19354 0.92346 0.91449 0.84982 1.83504 1.55943 1.46249 1.24851 1.20877 1.21142 1.07787 0.96872 0.87198 1.24541 0.94961 0.95578 0.98865 1.69619 1.29010 1.23907 1.27747 0.86158 0.80605 0.79184 0.80875 1.19640 1.20522 1.18205 1.21223 1.07578 1.04302 0.91723 1.21047 0.94027 0.93659 0.96802 1.23648 0.97057 0.97075 0.84201 1.24176 0.85986 0.99641 0.95016 1.89989 1.25892 1.24221 1.85571 1.24282 0.99475 0.86784 0.95434 0.92401 0.91234 0.91925 0.87945 0.92036 0.91312 0.92482 0.85782 0.85794 0.86436 0.86142 0.90661 0.84509 0.86531 0.88723 0.90181 0.89324 0.89604 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.11 37.16 0.34 -0.64 16 2 C 0.13 0.95 3.15 -67.94 -0.21 0.74 16 3 C -0.16 -1.04 9.26 37.15 0.34 -0.69 16 4 N -0.60 -6.08 2.62 -167.75 -0.44 -6.52 16 5 C 0.54 7.45 7.03 -13.04 -0.09 7.36 16 6 O -0.51 -8.74 12.19 -19.66 -0.24 -8.98 16 7 C -0.28 -3.67 8.73 -37.51 -0.33 -4.00 16 8 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 9 C -0.19 -3.07 5.87 -105.02 -0.62 -3.69 16 10 C -0.05 -0.73 9.40 -39.15 -0.37 -1.10 16 11 C -0.20 -3.65 9.97 -39.47 -0.39 -4.05 16 12 C 0.17 3.76 6.66 -38.89 -0.26 3.50 16 13 O -0.20 -5.04 8.57 0.73 0.01 -5.04 16 14 C -0.39 -10.49 9.94 30.91 0.31 -10.19 16 15 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 16 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 17 N -0.87 -23.96 13.96 55.48 0.77 -23.18 16 18 Si 0.91 20.55 28.62 -169.99 -4.86 15.69 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.26 -5.85 7.11 56.52 0.40 -5.44 16 22 C -0.23 -4.69 9.14 -39.47 -0.36 -5.05 16 23 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 24 C 0.09 0.77 3.76 -66.85 -0.25 0.51 16 25 C 0.03 0.31 8.17 37.64 0.31 0.62 16 26 O -0.34 -4.77 9.71 -60.06 -0.58 -5.36 16 27 C 0.02 0.19 8.56 37.64 0.32 0.51 16 28 H 0.06 0.30 6.70 -51.93 -0.35 -0.04 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.80 5.18 -51.93 -0.27 0.53 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 35 H 0.12 1.38 3.80 -52.49 -0.20 1.18 16 36 H 0.12 1.87 7.53 -52.49 -0.40 1.47 16 37 H 0.12 1.48 6.16 -52.48 -0.32 1.15 16 38 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 39 H 0.28 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.14 2.93 5.62 -52.48 -0.29 2.63 16 41 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 0.58 6.57 -51.93 -0.34 0.24 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.06 7.53 -51.93 -0.39 0.67 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -30.91 374.11 -7.99 -38.89 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.19 Total: 4.21 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.09 Total: -15.36 kcal Atomic # 7 Polarization: -30.04 SS G_CDS: 0.34 Total: -29.70 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.82 Total: -19.37 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.86 Total: 15.69 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.91 -7.99 -38.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295870141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.191 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds