Wall clock time and date at job start Tue Mar 31 2020 16:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47338 * 2 1 4 4 N 1.46495 * 109.46990 * 120.00180 * 2 1 3 5 5 C 1.34774 * 120.00249 * 124.94782 * 4 2 1 6 6 O 1.21724 * 120.00611 * 174.71140 * 5 4 2 7 7 C 1.46257 * 120.00152 * 354.70565 * 5 4 2 8 8 C 1.35016 * 120.00364 * 185.13476 * 7 5 4 9 9 C 1.46961 * 120.00043 * 180.02562 * 8 7 5 10 10 C 1.40026 * 120.10264 * 359.72568 * 9 8 7 11 11 C 1.37594 * 119.89843 * 179.69363 * 10 9 8 12 12 C 1.39175 * 120.10164 * 0.60908 * 11 10 9 13 13 O 1.35575 * 119.89905 * 179.69768 * 12 11 10 14 14 C 1.34781 * 116.99889 * 174.51431 * 13 12 11 15 15 H 1.07999 * 120.00268 * 5.04484 * 14 13 12 16 16 C 1.38722 * 119.99888 * 185.03901 * 14 13 12 17 17 N 1.31506 * 119.99755 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99839 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47193 * 89.99393 * 18 16 14 20 20 H 1.48506 * 109.46863 * 209.99599 * 18 16 14 21 21 H 1.48501 * 109.47304 * 329.99421 * 18 16 14 22 22 C 1.39169 * 120.20227 * 359.66843 * 12 11 10 23 23 C 1.37597 * 120.10336 * 0.02562 * 22 12 11 24 24 C 1.46499 * 120.00062 * 304.94553 * 4 2 1 25 25 C 1.54035 * 113.81755 * 141.49176 * 24 4 2 26 26 O 1.44442 * 85.42458 * 91.81109 * 25 24 4 27 27 C 1.44176 * 93.38345 * 24.08917 * 26 25 24 28 28 H 1.09000 * 109.47308 * 300.00164 * 1 2 3 29 29 H 1.09004 * 109.46913 * 59.99897 * 1 2 3 30 30 H 1.09004 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47308 * 239.99836 * 2 1 3 32 32 H 1.08998 * 109.47480 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47375 * 300.00206 * 3 2 1 34 34 H 1.09002 * 109.47553 * 59.99850 * 3 2 1 35 35 H 1.08002 * 119.99368 * 5.14011 * 7 5 4 36 36 H 1.08002 * 120.00268 * 0.02562 * 8 7 5 37 37 H 1.08005 * 120.04615 * 0.02562 * 10 9 8 38 38 H 1.08007 * 119.95113 * 180.27601 * 11 10 9 39 39 H 0.97006 * 119.99413 * 180.02562 * 17 16 14 40 40 H 1.08007 * 119.95299 * 180.02562 * 22 12 11 41 41 H 1.08002 * 120.05081 * 180.02562 * 23 22 12 42 42 H 1.08998 * 113.00027 * 9.67210 * 24 4 2 43 43 H 1.09002 * 113.86573 * 205.91429 * 25 24 4 44 44 H 1.09001 * 113.86791 * 337.62281 * 25 24 4 45 45 H 1.08993 * 113.86557 * 221.77089 * 27 26 25 46 46 H 1.09001 * 113.98121 * 90.06997 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.8732 -1.7254 1.0750 6 8 3.3540 -2.2374 2.0692 7 6 3.2234 -2.2334 -0.2510 8 6 3.9968 -3.3337 -0.3700 9 6 4.3490 -3.8438 -1.7025 10 6 3.8791 -3.1936 -2.8501 11 6 4.2167 -3.6711 -4.0956 12 6 5.0135 -4.8058 -4.2158 13 8 5.3386 -5.2762 -5.4450 14 6 6.2039 -6.3083 -5.4961 15 1 6.5418 -6.7754 -4.5828 16 6 6.6605 -6.7707 -6.7217 17 7 7.5052 -7.7774 -6.7714 18 14 6.0764 -5.9625 -8.3013 19 1 6.9953 -4.8517 -8.6581 20 1 6.0646 -6.9662 -9.3957 21 1 4.7052 -5.4271 -8.1057 22 6 5.4782 -5.4586 -3.0780 23 6 5.1509 -4.9848 -1.8283 24 6 1.5773 -0.2565 2.5240 25 6 1.3280 -1.4162 3.5067 26 8 2.7058 -1.2282 3.8974 27 6 2.7310 0.1460 3.4619 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.8634 -1.7282 -1.1351 36 1 4.3566 -3.8391 0.5141 37 1 3.2569 -2.3156 -2.7578 38 1 3.8583 -3.1677 -4.9815 39 1 7.8247 -8.1004 -7.6284 40 1 6.0966 -6.3387 -3.1759 41 1 5.5123 -5.4919 -0.9459 42 1 0.7662 0.4708 2.4867 43 1 0.6107 -1.1814 4.2931 44 1 1.1326 -2.3720 3.0205 45 1 3.6459 0.4265 2.9402 46 1 2.4435 0.8605 4.2332 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295870141.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:08 Heat of formation + Delta-G solvation = -30.224748 kcal Electronic energy + Delta-G solvation = -27680.926381 eV Core-core repulsion = 23731.325303 eV Total energy + Delta-G solvation = -3949.601077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13017 -40.96518 -39.58370 -38.54827 -37.45291 -34.75981 -34.17155 -32.45553 -32.02398 -30.44870 -29.16859 -28.07430 -27.42191 -27.33020 -24.94838 -23.82109 -22.78261 -22.66307 -20.94084 -19.90066 -19.20038 -18.76736 -18.61448 -17.40121 -16.79098 -16.72856 -16.66353 -16.17440 -15.93544 -15.87961 -15.77911 -15.51366 -15.35127 -14.97681 -14.83794 -14.40081 -14.25297 -14.08628 -14.00007 -13.54852 -13.33595 -13.29070 -13.03171 -12.84345 -12.72782 -12.62019 -12.56276 -12.39015 -12.05996 -11.95288 -11.70215 -11.43210 -11.31186 -11.15533 -10.71524 -10.64767 -10.36731 -9.93263 -9.67531 -8.74764 -8.54043 -6.26018 -0.28271 0.53610 1.10872 1.32525 1.37580 1.52509 1.92203 2.26162 2.33691 2.79339 2.81132 2.99341 3.13973 3.36946 3.61186 3.78820 3.91494 4.02518 4.13788 4.19726 4.21048 4.25796 4.30478 4.39554 4.40166 4.46998 4.57086 4.63465 4.64229 4.82149 4.82860 4.92681 5.01680 5.03824 5.09322 5.14338 5.19817 5.26789 5.33443 5.37900 5.41408 5.44275 5.56066 5.69370 5.71856 5.78822 5.82518 6.13231 6.45192 6.78997 7.31204 7.49876 8.56870 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.024012 B = 0.002206 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.812663 B =12687.690631 C =13540.742052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 C -0.160 4.160 4 N -0.590 5.590 5 C 0.535 3.465 6 O -0.549 6.549 7 C -0.241 4.241 8 C 0.008 3.992 9 C -0.159 4.159 10 C -0.040 4.040 11 C -0.191 4.191 12 C 0.137 3.863 13 O -0.232 6.232 14 C -0.404 4.404 15 H 0.083 0.917 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.972 3.028 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.242 4.242 23 C -0.047 4.047 24 C 0.091 3.909 25 C 0.027 3.973 26 O -0.387 6.387 27 C 0.017 3.983 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.165 0.835 38 H 0.141 0.859 39 H 0.287 0.713 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.633 21.956 14.584 31.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 C -0.218 4.218 4 N -0.322 5.322 5 C 0.326 3.674 6 O -0.428 6.428 7 C -0.261 4.261 8 C -0.012 4.012 9 C -0.160 4.160 10 C -0.057 4.057 11 C -0.210 4.210 12 C 0.086 3.914 13 O -0.138 6.138 14 C -0.480 4.480 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.557 5.557 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.262 4.262 23 C -0.065 4.065 24 C -0.013 4.013 25 C -0.051 4.051 26 O -0.306 6.306 27 C -0.061 4.061 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.135 0.865 37 H 0.182 0.818 38 H 0.159 0.841 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -17.132 21.437 14.852 31.203 hybrid contribution 0.576 -0.679 -0.584 1.065 sum -16.556 20.758 14.268 30.143 Atomic orbital electron populations 1.22163 0.93142 1.02537 1.03874 1.21594 0.95774 0.93954 0.87008 1.22172 1.01049 0.94828 1.03738 1.47787 1.45677 1.32201 1.06517 1.18692 0.78772 0.80126 0.89763 1.90970 1.52997 1.59089 1.39775 1.22955 1.05890 1.00642 0.96652 1.22142 0.90890 0.93336 0.94790 1.18806 1.05130 0.98949 0.93097 1.21307 0.96336 0.98510 0.89560 1.20491 1.04261 0.96665 0.99596 1.19922 0.93833 0.93128 0.84489 1.83460 1.57408 1.46747 1.26199 1.20753 1.22197 1.08779 0.96296 0.89956 1.25352 0.95218 0.96234 1.01983 1.69709 1.31383 1.26049 1.28602 0.85192 0.79899 0.78456 0.77046 1.18942 1.19293 1.18214 1.21212 1.07919 1.04008 0.93029 1.21266 0.94507 0.94529 0.96234 1.23705 0.97567 0.97021 0.83035 1.24331 0.85225 0.99164 0.96391 1.89951 1.28027 1.26516 1.86063 1.24454 0.99218 0.85869 0.96522 0.91265 0.89511 0.92952 0.87982 0.93484 0.89495 0.91540 0.82867 0.86480 0.81804 0.84095 0.90372 0.86942 0.84681 0.84756 0.87033 0.91670 0.91336 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 9.11 71.98 0.66 -0.44 16 2 C 0.12 1.23 3.15 44.99 0.14 1.37 16 3 C -0.16 -1.27 9.26 71.98 0.67 -0.60 16 4 N -0.59 -9.91 2.62 -813.91 -2.13 -12.05 16 5 C 0.53 13.32 7.03 86.33 0.61 13.93 16 6 O -0.55 -18.31 12.19 19.32 0.24 -18.08 16 7 C -0.24 -5.48 8.73 23.61 0.21 -5.27 16 8 C 0.01 0.22 9.45 23.82 0.23 0.45 16 9 C -0.16 -4.84 5.87 -20.13 -0.12 -4.96 16 10 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 11 C -0.19 -6.65 9.97 22.34 0.22 -6.42 16 12 C 0.14 6.09 6.66 22.72 0.15 6.24 16 13 O -0.23 -12.05 8.57 -20.32 -0.17 -12.23 16 14 C -0.40 -23.17 9.94 67.94 0.68 -22.49 16 15 H 0.08 4.97 5.41 -2.91 -0.02 4.96 16 16 C 0.01 0.65 5.49 84.86 0.47 1.12 16 17 N -0.92 -53.77 13.96 21.62 0.30 -53.47 16 18 Si 0.97 43.73 28.62 68.60 1.96 45.69 16 19 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 C -0.24 -10.42 9.14 22.34 0.20 -10.21 16 23 C -0.05 -1.66 9.78 22.55 0.22 -1.44 16 24 C 0.09 1.30 3.76 45.69 0.17 1.47 16 25 C 0.03 0.49 8.17 72.30 0.59 1.08 16 26 O -0.39 -10.44 9.71 -125.24 -1.22 -11.66 16 27 C 0.02 0.31 8.56 72.30 0.62 0.93 16 28 H 0.07 0.34 6.70 -2.39 -0.02 0.32 16 29 H 0.09 0.35 8.14 -2.38 -0.02 0.34 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 1.03 5.18 -2.39 -0.01 1.02 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.07 0.42 7.71 -2.39 -0.02 0.40 16 35 H 0.15 2.54 3.80 -2.91 -0.01 2.53 16 36 H 0.12 3.42 7.53 -2.91 -0.02 3.40 16 37 H 0.16 3.07 6.16 -2.91 -0.02 3.05 16 38 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 39 H 0.29 15.35 8.31 -92.70 -0.77 14.58 16 40 H 0.11 5.33 5.62 -2.91 -0.02 5.31 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.13 0.89 6.57 -2.39 -0.02 0.87 16 43 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.49 7.53 -2.39 -0.02 1.47 16 45 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -73.98 374.11 5.90 -68.08 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.00 Total: 19.85 kcal Atomic # 6 Polarization: -32.06 SS G_CDS: 5.92 Total: -26.14 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -1.83 Total: -65.51 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.16 Total: -41.96 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.96 Total: 45.69 kcal Total: -73.98 5.90 -68.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295870141.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.857 kcal (2) G-P(sol) polarization free energy of solvation -73.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds