Wall clock time and date at job start Tue Mar 31 2020 17:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70566 * 2 1 4 4 C 1.53189 * 109.58663 * 120.35873 * 2 1 3 5 5 H 1.09000 * 109.50028 * 54.46883 * 4 2 1 6 6 O 1.42904 * 109.49824 * 294.37181 * 4 2 1 7 7 C 1.53038 * 109.31258 * 174.41833 * 4 2 1 8 8 C 1.53042 * 109.54122 * 298.63353 * 7 4 2 9 9 C 1.53192 * 109.30899 * 61.36539 * 8 7 4 10 10 N 1.46929 * 108.77843 * 305.36456 * 9 8 7 11 11 C 1.34775 * 120.63256 * 233.61359 * 10 9 8 12 12 O 1.21723 * 119.99978 * 174.95802 * 11 10 9 13 13 C 1.46255 * 119.99829 * 354.95261 * 11 10 9 14 14 C 1.35023 * 119.99694 * 184.83210 * 13 11 10 15 15 C 1.46958 * 119.99800 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.10100 * 359.72814 * 15 14 13 17 17 C 1.37602 * 119.89548 * 179.71689 * 16 15 14 18 18 C 1.39171 * 120.09952 * 0.53298 * 17 16 15 19 19 O 1.35580 * 119.89680 * 179.73884 * 18 17 16 20 20 C 1.34774 * 116.99924 * 185.54682 * 19 18 17 21 21 H 1.08007 * 120.00667 * 354.91715 * 20 19 18 22 22 C 1.38725 * 120.00019 * 174.92374 * 20 19 18 23 23 N 1.31502 * 119.99805 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47340 * 59.99734 * 24 22 20 26 26 H 1.48502 * 109.46855 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47255 * 299.99914 * 24 22 20 28 28 C 1.39170 * 120.20849 * 359.76653 * 18 17 16 29 29 C 1.37601 * 120.09949 * 359.95197 * 28 18 17 30 30 H 1.09007 * 109.47059 * 296.92118 * 1 2 3 31 31 H 1.09004 * 109.46905 * 56.91220 * 1 2 3 32 32 H 1.08995 * 109.47550 * 176.91696 * 1 2 3 33 33 H 0.96696 * 114.00147 * 180.16631 * 6 4 2 34 34 H 1.09000 * 109.46048 * 58.66057 * 7 4 2 35 35 H 1.09006 * 109.46047 * 178.62581 * 7 4 2 36 36 H 1.08992 * 109.49621 * 181.31892 * 8 7 4 37 37 H 1.08993 * 109.49598 * 301.41496 * 8 7 4 38 38 H 1.09002 * 109.58943 * 65.15363 * 9 8 7 39 39 H 1.08997 * 109.58625 * 185.57897 * 9 8 7 40 40 H 1.08000 * 120.00260 * 4.82751 * 13 11 10 41 41 H 1.07999 * 120.00301 * 0.02562 * 14 13 11 42 42 H 1.07994 * 120.04965 * 359.97001 * 16 15 14 43 43 H 1.08001 * 119.94542 * 180.27174 * 17 16 15 44 44 H 0.96996 * 120.00083 * 180.02562 * 23 22 20 45 45 H 1.08003 * 119.95679 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05306 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 1 1.6029 -1.7254 1.2913 6 8 1.6797 0.0080 2.4141 7 6 3.5674 -0.8481 1.1700 8 6 3.9568 -1.6659 -0.0636 9 6 3.4650 -0.9470 -1.3238 10 7 2.0224 -0.6995 -1.1946 11 6 1.1672 -1.1065 -2.1535 12 8 -0.0326 -0.9782 -1.9933 13 6 1.6809 -1.7022 -3.3865 14 6 0.8320 -2.0202 -4.3872 15 6 1.3481 -2.6183 -5.6264 16 6 2.7206 -2.8540 -5.7738 17 6 3.1986 -3.4196 -6.9336 18 6 2.3216 -3.7469 -7.9635 19 8 2.7977 -4.2991 -9.1066 20 6 1.9163 -4.4868 -10.1087 21 1 0.8683 -4.2779 -9.9525 22 6 2.3552 -4.9486 -11.3410 23 7 3.6313 -5.2027 -11.5315 24 14 1.1335 -5.2094 -12.7298 25 1 0.4624 -3.9232 -13.0469 26 1 1.8500 -5.7032 -13.9332 27 1 0.1169 -6.2086 -12.3137 28 6 0.9576 -3.5087 -7.8240 29 6 0.4698 -2.9489 -6.6655 30 1 -0.3633 0.4653 0.9164 31 1 -0.3633 0.5611 -0.8611 32 1 -0.3634 -1.0261 -0.0553 33 1 1.9755 -0.3953 3.2416 34 1 4.0061 0.1472 1.0993 35 1 3.9377 -1.3452 2.0667 36 1 5.0410 -1.7698 -0.1038 37 1 3.4982 -2.6529 -0.0054 38 1 3.9902 0.0020 -1.4318 39 1 3.6517 -1.5717 -2.1972 40 1 2.7391 -1.8877 -3.4966 41 1 -0.2262 -1.8343 -4.2773 42 1 3.4022 -2.5961 -4.9769 43 1 4.2564 -3.6058 -7.0464 44 1 3.9383 -5.5252 -12.3932 45 1 0.2807 -3.7640 -8.6260 46 1 -0.5889 -2.7648 -6.5579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296804929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:51 Heat of formation + Delta-G solvation = -57.219025 kcal Electronic energy + Delta-G solvation = -27311.200590 eV Core-core repulsion = 23360.428954 eV Total energy + Delta-G solvation = -3950.771637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.67744 -39.21033 -38.22014 -36.90926 -36.03014 -33.59184 -32.84132 -32.43709 -31.58285 -30.44748 -28.23931 -27.34738 -25.71856 -24.86337 -23.55450 -22.21861 -22.04685 -21.26220 -19.99230 -18.77397 -18.06984 -17.60326 -17.17627 -16.96425 -15.83506 -15.74407 -15.08724 -14.92071 -14.76765 -14.64795 -14.37689 -14.13566 -13.84885 -13.78494 -13.36347 -13.17318 -13.11032 -13.01804 -12.60731 -12.39683 -12.25880 -11.96142 -11.83244 -11.77962 -11.74156 -11.39609 -11.15329 -11.11485 -11.07084 -10.98226 -10.68547 -10.54971 -10.22818 -9.59824 -9.51715 -9.01469 -8.88623 -8.70452 -8.40236 -7.13160 -6.66575 -4.21430 1.05162 2.11590 2.53089 2.78636 3.03102 3.04650 3.07105 3.52216 3.81095 3.92384 4.29346 4.38637 4.49179 4.52328 4.74045 4.81203 4.89032 4.91528 5.00246 5.05833 5.20250 5.22235 5.33791 5.40045 5.46013 5.49618 5.53626 5.54443 5.64441 5.67345 5.81515 5.87609 5.99300 6.10375 6.11311 6.22557 6.44587 6.51110 6.56636 6.61669 6.77394 6.89845 7.10977 7.21768 7.23849 7.26318 7.42007 7.62024 7.78580 8.30825 8.78049 9.44801 10.49915 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.001937 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.962748 B =14450.521063 C =15198.037413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.155 3.845 3 H 0.074 0.926 4 C 0.094 3.906 5 H 0.059 0.941 6 O -0.562 6.562 7 C -0.153 4.153 8 C -0.134 4.134 9 C 0.103 3.897 10 N -0.611 5.611 11 C 0.560 3.440 12 O -0.546 6.546 13 C -0.287 4.287 14 C 0.040 3.960 15 C -0.199 4.199 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.394 4.394 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.852 5.852 24 Si 0.945 3.055 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.275 0.725 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 7.178 21.411 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.051 3.949 3 H 0.092 0.908 4 C 0.034 3.966 5 H 0.077 0.923 6 O -0.367 6.367 7 C -0.191 4.191 8 C -0.173 4.173 9 C -0.020 4.020 10 N -0.346 5.346 11 C 0.354 3.646 12 O -0.427 6.427 13 C -0.308 4.308 14 C 0.020 3.980 15 C -0.200 4.200 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.226 0.774 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.103 7.463 20.749 22.051 hybrid contribution -0.034 -0.580 -0.229 0.625 sum -0.137 6.883 20.520 21.644 Atomic orbital electron populations 1.22142 0.91821 1.03767 1.01005 1.20987 0.96532 0.94866 0.82496 0.90784 1.22214 0.93415 0.94886 0.86101 0.92314 1.86477 1.81213 1.53072 1.15937 1.22284 0.96579 1.01418 0.98779 1.21906 1.01682 0.99537 0.94147 1.21853 0.80361 1.00794 0.98946 1.47904 1.07280 1.59233 1.20203 1.18383 0.85671 0.77163 0.83398 1.90837 1.15467 1.56572 1.79806 1.22576 1.00544 1.12523 0.95173 1.22293 0.99017 0.86510 0.90181 1.18459 0.93652 1.12342 0.95560 1.20856 0.94057 0.95445 0.95748 1.20143 0.99166 1.08577 0.93982 1.19610 0.91956 0.89690 0.87727 1.83902 1.37973 1.65472 1.18914 1.21429 0.90341 1.45993 0.89134 0.88580 1.25397 0.97200 0.96041 0.97825 1.69998 1.13886 1.39626 1.24925 0.85713 0.79119 0.79314 0.78986 1.19236 1.20077 1.19243 1.21100 0.95540 1.09533 0.99968 1.20989 0.98194 0.94148 0.91947 0.93521 0.90822 0.91260 0.77422 0.90893 0.91426 0.90101 0.91138 0.91266 0.88573 0.85719 0.85942 0.86560 0.86135 0.91528 0.85121 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 7.52 37.16 0.28 -1.37 16 2 C 0.15 1.69 3.20 -67.60 -0.22 1.48 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.09 0.82 3.00 -26.61 -0.08 0.74 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 6 O -0.56 -4.70 12.85 -35.23 -0.45 -5.16 16 7 C -0.15 -1.01 5.51 -26.69 -0.15 -1.16 16 8 C -0.13 -0.90 6.08 -26.61 -0.16 -1.06 16 9 C 0.10 0.85 6.31 -3.71 -0.02 0.83 16 10 N -0.61 -6.87 2.97 -166.90 -0.50 -7.36 16 11 C 0.56 7.85 7.53 -13.04 -0.10 7.75 16 12 O -0.55 -9.06 11.63 5.17 0.06 -9.00 16 13 C -0.29 -3.88 8.73 -37.51 -0.33 -4.20 16 14 C 0.04 0.59 9.45 -37.19 -0.35 0.24 16 15 C -0.20 -3.33 5.87 -105.03 -0.62 -3.95 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -3.92 9.97 -39.47 -0.39 -4.31 16 18 C 0.17 3.79 6.66 -38.89 -0.26 3.53 16 19 O -0.16 -4.35 9.74 0.73 0.01 -4.34 16 20 C -0.39 -10.38 9.48 30.91 0.29 -10.08 16 21 H 0.10 2.32 5.18 -52.48 -0.27 2.05 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -23.68 13.67 55.48 0.76 -22.92 16 24 Si 0.94 19.39 29.55 -169.99 -5.02 14.37 16 25 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 28 C -0.24 -4.96 9.14 -39.47 -0.36 -5.32 16 29 C -0.03 -0.61 9.78 -39.15 -0.38 -0.99 16 30 H 0.05 0.55 7.78 -51.93 -0.40 0.14 16 31 H 0.07 1.05 6.69 -51.93 -0.35 0.70 16 32 H 0.07 0.98 6.80 -51.93 -0.35 0.63 16 33 H 0.38 1.53 9.08 45.56 0.41 1.94 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.76 5.37 -51.93 -0.28 0.48 16 40 H 0.13 1.44 3.90 -52.49 -0.20 1.24 16 41 H 0.12 1.82 7.53 -52.49 -0.40 1.42 16 42 H 0.12 1.56 6.16 -52.49 -0.32 1.24 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.13 2.65 5.62 -52.48 -0.29 2.35 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 370.41 15.07 5.58 5.58 Total: -1.00 -30.89 370.41 -8.27 -39.17 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.40 Total: 7.63 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.31 Total: -17.97 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.26 Total: -30.28 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.39 Total: -18.50 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.89 -8.27 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.052 kcal (2) G-P(sol) polarization free energy of solvation -30.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds