Wall clock time and date at job start Tue Mar 31 2020 17:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.70566 * 2 1 4 4 C 1.53189 * 109.58663 * 120.35873 * 2 1 3 5 5 H 1.09000 * 109.50028 * 54.46883 * 4 2 1 6 6 O 1.42904 * 109.49824 * 294.37181 * 4 2 1 7 7 C 1.53038 * 109.31258 * 174.41833 * 4 2 1 8 8 C 1.53042 * 109.54122 * 298.63353 * 7 4 2 9 9 C 1.53192 * 109.30899 * 61.36539 * 8 7 4 10 10 N 1.46929 * 108.77843 * 305.36456 * 9 8 7 11 11 C 1.34775 * 120.63256 * 233.61359 * 10 9 8 12 12 O 1.21723 * 119.99978 * 174.95802 * 11 10 9 13 13 C 1.46255 * 119.99829 * 354.95261 * 11 10 9 14 14 C 1.35023 * 119.99694 * 184.83210 * 13 11 10 15 15 C 1.46958 * 119.99800 * 179.97438 * 14 13 11 16 16 C 1.40030 * 120.10100 * 359.72814 * 15 14 13 17 17 C 1.37602 * 119.89548 * 179.71689 * 16 15 14 18 18 C 1.39171 * 120.09952 * 0.53298 * 17 16 15 19 19 O 1.35580 * 119.89680 * 179.73884 * 18 17 16 20 20 C 1.34774 * 116.99924 * 185.54682 * 19 18 17 21 21 H 1.08007 * 120.00667 * 354.91715 * 20 19 18 22 22 C 1.38725 * 120.00019 * 174.92374 * 20 19 18 23 23 N 1.31502 * 119.99805 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00052 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47340 * 59.99734 * 24 22 20 26 26 H 1.48502 * 109.46855 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47255 * 299.99914 * 24 22 20 28 28 C 1.39170 * 120.20849 * 359.76653 * 18 17 16 29 29 C 1.37601 * 120.09949 * 359.95197 * 28 18 17 30 30 H 1.09007 * 109.47059 * 296.92118 * 1 2 3 31 31 H 1.09004 * 109.46905 * 56.91220 * 1 2 3 32 32 H 1.08995 * 109.47550 * 176.91696 * 1 2 3 33 33 H 0.96696 * 114.00147 * 180.16631 * 6 4 2 34 34 H 1.09000 * 109.46048 * 58.66057 * 7 4 2 35 35 H 1.09006 * 109.46047 * 178.62581 * 7 4 2 36 36 H 1.08992 * 109.49621 * 181.31892 * 8 7 4 37 37 H 1.08993 * 109.49598 * 301.41496 * 8 7 4 38 38 H 1.09002 * 109.58943 * 65.15363 * 9 8 7 39 39 H 1.08997 * 109.58625 * 185.57897 * 9 8 7 40 40 H 1.08000 * 120.00260 * 4.82751 * 13 11 10 41 41 H 1.07999 * 120.00301 * 0.02562 * 14 13 11 42 42 H 1.07994 * 120.04965 * 359.97001 * 16 15 14 43 43 H 1.08001 * 119.94542 * 180.27174 * 17 16 15 44 44 H 0.96996 * 120.00083 * 180.02562 * 23 22 20 45 45 H 1.08003 * 119.95679 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05306 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2453 5 1 1.6029 -1.7254 1.2913 6 8 1.6797 0.0080 2.4141 7 6 3.5674 -0.8481 1.1700 8 6 3.9568 -1.6659 -0.0636 9 6 3.4650 -0.9470 -1.3238 10 7 2.0224 -0.6995 -1.1946 11 6 1.1672 -1.1065 -2.1535 12 8 -0.0326 -0.9782 -1.9933 13 6 1.6809 -1.7022 -3.3865 14 6 0.8320 -2.0202 -4.3872 15 6 1.3481 -2.6183 -5.6264 16 6 2.7206 -2.8540 -5.7738 17 6 3.1986 -3.4196 -6.9336 18 6 2.3216 -3.7469 -7.9635 19 8 2.7977 -4.2991 -9.1066 20 6 1.9163 -4.4868 -10.1087 21 1 0.8683 -4.2779 -9.9525 22 6 2.3552 -4.9486 -11.3410 23 7 3.6313 -5.2027 -11.5315 24 14 1.1335 -5.2094 -12.7298 25 1 0.4624 -3.9232 -13.0469 26 1 1.8500 -5.7032 -13.9332 27 1 0.1169 -6.2086 -12.3137 28 6 0.9576 -3.5087 -7.8240 29 6 0.4698 -2.9489 -6.6655 30 1 -0.3633 0.4653 0.9164 31 1 -0.3633 0.5611 -0.8611 32 1 -0.3634 -1.0261 -0.0553 33 1 1.9755 -0.3953 3.2416 34 1 4.0061 0.1472 1.0993 35 1 3.9377 -1.3452 2.0667 36 1 5.0410 -1.7698 -0.1038 37 1 3.4982 -2.6529 -0.0054 38 1 3.9902 0.0020 -1.4318 39 1 3.6517 -1.5717 -2.1972 40 1 2.7391 -1.8877 -3.4966 41 1 -0.2262 -1.8343 -4.2773 42 1 3.4022 -2.5961 -4.9769 43 1 4.2564 -3.6058 -7.0464 44 1 3.9383 -5.5252 -12.3932 45 1 0.2807 -3.7640 -8.6260 46 1 -0.5889 -2.7648 -6.5579 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296804929.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:50 Heat of formation + Delta-G solvation = -77.351319 kcal Electronic energy + Delta-G solvation = -27312.073592 eV Core-core repulsion = 23360.428954 eV Total energy + Delta-G solvation = -3951.644638 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62764 -40.81537 -39.13135 -38.44619 -36.79799 -34.90762 -34.18291 -33.60559 -32.59239 -31.95800 -29.59034 -28.19188 -27.49607 -25.78620 -24.68846 -23.69169 -22.99498 -22.22171 -21.14579 -20.13784 -19.37156 -18.80261 -18.47168 -17.97872 -16.82016 -16.73134 -16.37463 -16.34881 -15.84969 -15.70781 -15.61263 -15.42994 -15.29494 -14.75393 -14.66941 -14.42929 -14.10524 -13.98849 -13.81472 -13.57839 -13.38080 -13.27807 -13.21837 -12.97698 -12.68253 -12.60175 -12.54101 -12.24505 -12.15122 -12.02020 -11.76454 -11.71709 -11.21033 -11.09414 -10.84541 -10.55381 -10.12862 -9.88846 -9.62028 -8.67485 -8.51849 -6.17853 -0.24694 0.58943 1.13487 1.35929 1.47266 1.51491 1.89158 2.15583 2.33964 2.86485 3.17946 3.31236 3.42672 3.53012 3.72433 3.79734 3.89234 3.98002 4.07150 4.08244 4.19468 4.26069 4.32698 4.37466 4.47596 4.52224 4.59063 4.65109 4.72257 4.86791 4.92323 4.95153 4.99807 5.01693 5.05763 5.12363 5.20095 5.22395 5.34722 5.35261 5.39291 5.56786 5.63774 5.66068 5.81586 5.97518 6.10666 6.41975 6.84129 6.92436 7.22230 7.69490 8.69879 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.032552 B = 0.001937 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.962748 B =14450.521063 C =15198.037413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.148 3.852 3 H 0.078 0.922 4 C 0.100 3.900 5 H 0.050 0.950 6 O -0.576 6.576 7 C -0.147 4.147 8 C -0.131 4.131 9 C 0.093 3.907 10 N -0.604 5.604 11 C 0.549 3.451 12 O -0.576 6.576 13 C -0.250 4.250 14 C 0.018 3.982 15 C -0.170 4.170 16 C -0.037 4.037 17 C -0.206 4.206 18 C 0.130 3.870 19 O -0.219 6.219 20 C -0.417 4.417 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.018 2.982 25 H -0.258 1.258 26 H -0.271 1.271 27 H -0.257 1.257 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.398 0.602 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.152 0.848 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 8.470 24.747 26.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.045 3.955 3 H 0.096 0.904 4 C 0.040 3.960 5 H 0.068 0.932 6 O -0.385 6.385 7 C -0.185 4.185 8 C -0.169 4.169 9 C -0.029 4.029 10 N -0.337 5.337 11 C 0.342 3.658 12 O -0.459 6.459 13 C -0.270 4.270 14 C -0.002 4.002 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.225 4.225 18 C 0.078 3.922 19 O -0.124 6.124 20 C -0.493 4.493 21 H 0.122 0.878 22 C -0.217 4.217 23 N -0.550 5.550 24 Si 0.837 3.163 25 H -0.182 1.182 26 H -0.196 1.196 27 H -0.181 1.181 28 C -0.269 4.269 29 C -0.058 4.058 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.170 0.830 41 H 0.142 0.858 42 H 0.177 0.823 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.115 8.784 24.186 25.731 hybrid contribution -0.166 -0.688 -0.578 0.914 sum -0.051 8.096 23.607 24.957 Atomic orbital electron populations 1.21967 0.93462 1.02119 1.00243 1.21061 0.95279 0.95527 0.83629 0.90384 1.22045 0.94912 0.93755 0.85282 0.93239 1.86428 1.81679 1.53507 1.16836 1.22247 0.94565 1.01889 0.99761 1.21905 1.03033 0.98809 0.93137 1.22187 0.78286 1.02109 1.00277 1.47979 1.08460 1.57830 1.19457 1.18562 0.85596 0.77475 0.84134 1.90851 1.16923 1.57699 1.80426 1.22888 1.01610 1.08595 0.93918 1.22169 0.99534 0.88560 0.89938 1.18772 0.93627 1.09200 0.95531 1.21264 0.94743 0.93856 0.95565 1.20422 0.99258 1.08553 0.94263 1.20194 0.93562 0.90835 0.87656 1.83884 1.38903 1.69190 1.20412 1.21847 0.90918 1.46664 0.89858 0.87766 1.26600 0.99185 0.95674 1.00270 1.70134 1.16159 1.42980 1.25683 0.84658 0.76644 0.79654 0.75384 1.18190 1.19589 1.18134 1.21200 0.94754 1.09899 1.01007 1.21308 1.00028 0.93460 0.91045 0.93023 0.92895 0.93140 0.75163 0.90591 0.89444 0.87726 0.91762 0.89669 0.87802 0.83039 0.85816 0.82279 0.85796 0.91587 0.85802 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 7.52 71.98 0.54 -2.40 16 2 C 0.15 2.90 3.20 44.97 0.14 3.04 16 3 H 0.08 1.49 8.14 -2.38 -0.02 1.48 16 4 C 0.10 1.46 3.00 30.67 0.09 1.55 16 5 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 6 O -0.58 -8.07 12.85 -148.98 -1.91 -9.98 16 7 C -0.15 -1.34 5.51 30.62 0.17 -1.17 16 8 C -0.13 -1.15 6.08 30.67 0.19 -0.96 16 9 C 0.09 1.10 6.31 86.36 0.55 1.65 16 10 N -0.60 -11.63 2.97 -800.17 -2.38 -14.01 16 11 C 0.55 13.85 7.53 86.33 0.65 14.50 16 12 O -0.58 -18.29 11.63 -4.42 -0.05 -18.34 16 13 C -0.25 -5.71 8.73 23.61 0.21 -5.50 16 14 C 0.02 0.47 9.45 23.82 0.23 0.70 16 15 C -0.17 -5.22 5.87 -20.13 -0.12 -5.34 16 16 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 17 C -0.21 -8.03 9.97 22.34 0.22 -7.81 16 18 C 0.13 6.11 6.66 22.72 0.15 6.26 16 19 O -0.22 -12.57 9.74 -20.31 -0.20 -12.77 16 20 C -0.42 -23.34 9.48 67.94 0.64 -22.70 16 21 H 0.11 5.33 5.18 -2.91 -0.02 5.31 16 22 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 23 N -0.91 -54.03 13.67 21.62 0.30 -53.74 16 24 Si 1.02 41.31 29.55 68.60 2.03 43.34 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 27 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 28 C -0.25 -10.38 9.14 22.34 0.20 -10.18 16 29 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 30 H 0.05 1.17 7.78 -2.38 -0.02 1.15 16 31 H 0.05 1.49 6.69 -2.38 -0.02 1.47 16 32 H 0.05 1.41 6.80 -2.39 -0.02 1.39 16 33 H 0.40 1.99 9.08 -74.06 -0.67 1.32 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.06 5.37 -2.39 -0.01 1.05 16 40 H 0.15 2.62 3.90 -2.91 -0.01 2.60 16 41 H 0.12 3.35 7.53 -2.91 -0.02 3.33 16 42 H 0.16 3.41 6.16 -2.91 -0.02 3.39 16 43 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 44 H 0.28 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.12 5.22 5.62 -2.91 -0.02 5.21 16 46 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.21 370.41 2.89 -70.32 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.35 Total: 26.11 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 4.76 Total: -30.93 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -2.08 Total: -67.75 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -2.16 Total: -41.09 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -73.21 2.89 -70.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804929.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.035 kcal (2) G-P(sol) polarization free energy of solvation -73.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds