Wall clock time and date at job start Tue Mar 31 2020 17:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70286 * 2 1 4 4 C 1.52764 * 109.50642 * 239.89121 * 2 1 3 5 5 H 1.09002 * 109.38589 * 305.63137 * 4 2 1 6 6 O 1.42900 * 109.56792 * 65.67117 * 4 2 1 7 7 C 1.53042 * 109.38173 * 185.70671 * 4 2 1 8 8 C 1.53041 * 109.53754 * 61.23912 * 7 4 2 9 9 C 1.53194 * 109.31318 * 298.63250 * 8 7 4 10 10 N 1.46924 * 109.58728 * 120.36146 * 2 1 3 11 11 C 1.34775 * 120.62923 * 353.41950 * 10 2 1 12 12 O 1.21719 * 120.00032 * 353.86732 * 11 10 2 13 13 C 1.46252 * 119.99790 * 174.14792 * 11 10 2 14 14 C 1.35022 * 120.00018 * 184.81768 * 13 11 10 15 15 C 1.46957 * 120.00104 * 180.02562 * 14 13 11 16 16 C 1.40023 * 120.10074 * 359.72936 * 15 14 13 17 17 C 1.37608 * 119.89484 * 179.72256 * 16 15 14 18 18 C 1.39172 * 120.10026 * 0.56670 * 17 16 15 19 19 O 1.35572 * 119.89841 * 179.69775 * 18 17 16 20 20 C 1.34785 * 117.00197 * 174.65556 * 19 18 17 21 21 H 1.07991 * 119.99784 * 5.03892 * 20 19 18 22 22 C 1.38722 * 119.99673 * 185.03525 * 20 19 18 23 23 N 1.31503 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99325 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47200 * 60.00199 * 24 22 20 26 26 H 1.48505 * 109.46642 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47266 * 299.99713 * 24 22 20 28 28 C 1.39173 * 120.20741 * 359.68541 * 18 17 16 29 29 C 1.37604 * 120.09769 * 0.03756 * 28 18 17 30 30 H 1.08997 * 109.46717 * 305.50059 * 1 2 3 31 31 H 1.09004 * 109.46669 * 65.49551 * 1 2 3 32 32 H 1.08994 * 109.46866 * 185.50239 * 1 2 3 33 33 H 0.96703 * 113.99449 * 179.97438 * 6 4 2 34 34 H 1.08994 * 109.46450 * 301.21801 * 7 4 2 35 35 H 1.08999 * 109.45109 * 181.24806 * 7 4 2 36 36 H 1.09007 * 109.50040 * 178.68498 * 8 7 4 37 37 H 1.09001 * 109.52777 * 58.60398 * 8 7 4 38 38 H 1.09003 * 109.58808 * 294.84830 * 9 8 7 39 39 H 1.09000 * 109.58948 * 174.42570 * 9 8 7 40 40 H 1.07995 * 120.00135 * 4.82335 * 13 11 10 41 41 H 1.08005 * 119.99864 * 359.97438 * 14 13 11 42 42 H 1.07993 * 120.05320 * 359.97213 * 16 15 14 43 43 H 1.08001 * 119.94594 * 180.27172 * 17 16 15 44 44 H 0.97000 * 119.99552 * 180.02562 * 23 22 20 45 45 H 1.07995 * 119.95408 * 180.02562 * 28 18 17 46 46 H 1.08007 * 120.04696 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7223 -1.2457 5 1 1.5963 -1.7167 -1.2945 6 8 1.6771 0.0198 -2.4116 7 6 3.5638 -0.8461 -1.1728 8 6 3.9523 -1.6687 0.0578 9 6 3.4645 -0.9521 1.3209 10 7 2.0226 -0.6997 1.1944 11 6 1.1674 -1.1072 2.1530 12 8 -0.0088 -0.8001 2.0899 13 6 1.6537 -1.9132 3.2723 14 6 0.7826 -2.4033 4.1800 15 6 1.2714 -3.2127 5.3050 16 6 2.6394 -3.4818 5.4344 17 6 3.0930 -4.2355 6.4926 18 6 2.1932 -4.7398 7.4269 19 8 2.6439 -5.4869 8.4644 20 6 1.7389 -5.8525 9.3940 21 1 0.6941 -5.6199 9.2511 22 6 2.1498 -6.5275 10.5342 23 7 3.4222 -6.8102 10.7083 24 14 0.8953 -7.0347 11.8220 25 1 -0.1049 -7.9440 11.2076 26 1 1.5846 -7.7357 12.9351 27 1 0.2095 -5.8270 12.3476 28 6 0.8320 -4.4794 7.2994 29 6 0.3698 -3.7220 6.2477 30 1 -0.3633 0.5968 0.8366 31 1 -0.3633 0.4263 -0.9352 32 1 -0.3633 -1.0229 0.0985 33 1 1.9704 -0.3822 -3.2408 34 1 4.0058 0.1476 -1.0997 35 1 3.9311 -1.3416 -2.0715 36 1 5.0363 -1.7762 0.0963 37 1 3.4909 -2.6544 -0.0024 38 1 3.9930 -0.0051 1.4309 39 1 3.6505 -1.5800 2.1922 40 1 2.7096 -2.1164 3.3727 41 1 -0.2733 -2.1997 4.0798 42 1 3.3378 -3.0952 4.7071 43 1 4.1485 -4.4398 6.5957 44 1 3.7093 -7.2825 11.5054 45 1 0.1374 -4.8724 8.0270 46 1 -0.6867 -3.5200 6.1498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296804934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:55 Heat of formation + Delta-G solvation = -57.933244 kcal Electronic energy + Delta-G solvation = -27341.155874 eV Core-core repulsion = 23390.353267 eV Total energy + Delta-G solvation = -3950.802608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68197 -39.21223 -38.23402 -36.91081 -36.03240 -33.59432 -32.83618 -32.43440 -31.59602 -30.44861 -28.24226 -27.34870 -25.72277 -24.87609 -23.56416 -22.22142 -22.04364 -21.24968 -19.97183 -18.77998 -18.08719 -17.62345 -17.18549 -16.97270 -15.84213 -15.68258 -15.09317 -14.98297 -14.76683 -14.59348 -14.38870 -14.17869 -13.84829 -13.72269 -13.37330 -13.26519 -13.10742 -12.99995 -12.60662 -12.35884 -12.26680 -11.97298 -11.82788 -11.77930 -11.70337 -11.37746 -11.15558 -11.11467 -11.08006 -10.99797 -10.68651 -10.55052 -10.22882 -9.60547 -9.51773 -9.05067 -8.88778 -8.70940 -8.40380 -7.13299 -6.66704 -4.21616 1.05024 2.11401 2.52754 2.78238 3.02996 3.04613 3.07017 3.51733 3.80986 3.93960 4.29520 4.38586 4.49001 4.52843 4.74038 4.80021 4.89208 4.91645 4.99993 5.05747 5.20497 5.22948 5.32990 5.40066 5.46170 5.49718 5.53912 5.54456 5.64300 5.67583 5.81326 5.87396 5.99169 6.10111 6.10209 6.22785 6.44410 6.50828 6.56273 6.61209 6.77227 6.89739 7.10832 7.21607 7.23481 7.26140 7.42188 7.61865 7.78484 8.30879 8.77934 9.44630 10.49771 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.001958 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.715274 B =14297.377000 C =15018.736613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.155 3.845 3 H 0.074 0.926 4 C 0.094 3.906 5 H 0.059 0.941 6 O -0.562 6.562 7 C -0.152 4.152 8 C -0.135 4.135 9 C 0.103 3.897 10 N -0.611 5.611 11 C 0.560 3.440 12 O -0.546 6.546 13 C -0.288 4.288 14 C 0.040 3.960 15 C -0.199 4.199 16 C -0.043 4.043 17 C -0.199 4.199 18 C 0.167 3.833 19 O -0.162 6.162 20 C -0.394 4.394 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.852 5.852 24 Si 0.945 3.055 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.267 1.267 28 C -0.242 4.242 29 C -0.034 4.034 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.379 0.621 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.275 0.725 45 H 0.131 0.869 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.694 9.656 -20.144 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.051 3.949 3 H 0.092 0.908 4 C 0.034 3.966 5 H 0.077 0.923 6 O -0.367 6.367 7 C -0.190 4.190 8 C -0.173 4.173 9 C -0.020 4.020 10 N -0.346 5.346 11 C 0.354 3.646 12 O -0.426 6.426 13 C -0.308 4.308 14 C 0.020 3.980 15 C -0.200 4.200 16 C -0.061 4.061 17 C -0.219 4.219 18 C 0.110 3.890 19 O -0.063 6.063 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.484 5.484 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 C -0.261 4.261 29 C -0.053 4.053 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.226 0.774 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.209 9.986 -19.457 21.871 hybrid contribution -0.056 -0.737 0.157 0.756 sum 0.154 9.249 -19.301 21.403 Atomic orbital electron populations 1.22141 0.91914 1.03626 1.01349 1.20862 0.96490 0.95001 0.82521 0.90825 1.22111 0.93478 0.94817 0.86186 0.92346 1.86475 1.81391 1.52860 1.15962 1.22279 0.96542 1.01388 0.98826 1.21912 1.01718 0.99556 0.94136 1.21865 0.80363 1.00762 0.99005 1.47910 1.07299 1.59191 1.20242 1.18372 0.85189 0.78938 0.82068 1.90821 1.17250 1.57328 1.77250 1.22574 1.00539 1.08748 0.98964 1.22294 0.99097 0.87476 0.89145 1.18456 0.93654 1.08635 0.99259 1.20854 0.94194 0.95351 0.95711 1.20145 0.99010 1.05565 0.97148 1.19609 0.92084 0.88688 0.88604 1.83903 1.37730 1.56315 1.28313 1.21429 0.89766 1.37524 0.98179 0.88577 1.25397 0.97359 0.96208 0.97494 1.70001 1.14613 1.36116 1.27700 0.85714 0.79158 0.79203 0.79064 1.19244 1.20076 1.19232 1.21102 0.95681 1.07228 1.02127 1.20992 0.98131 0.93759 0.92402 0.90150 0.93316 0.91928 0.77384 0.90908 0.91407 0.90128 0.91067 0.91274 0.88530 0.85701 0.85944 0.86565 0.86136 0.91529 0.85119 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 7.56 37.16 0.28 -1.40 16 2 C 0.15 1.70 3.18 -67.82 -0.22 1.48 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.09 0.82 2.98 -26.83 -0.08 0.74 16 5 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 6 O -0.56 -4.69 12.80 -35.23 -0.45 -5.14 16 7 C -0.15 -1.01 5.51 -26.69 -0.15 -1.16 16 8 C -0.13 -0.91 6.08 -26.61 -0.16 -1.07 16 9 C 0.10 0.85 6.35 -3.71 -0.02 0.83 16 10 N -0.61 -6.88 2.98 -167.15 -0.50 -7.38 16 11 C 0.56 7.87 7.42 -13.04 -0.10 7.77 16 12 O -0.55 -9.09 11.81 5.17 0.06 -9.02 16 13 C -0.29 -3.88 8.75 -37.51 -0.33 -4.21 16 14 C 0.04 0.59 9.45 -37.20 -0.35 0.24 16 15 C -0.20 -3.33 5.87 -105.03 -0.62 -3.95 16 16 C -0.04 -0.71 9.40 -39.14 -0.37 -1.08 16 17 C -0.20 -3.92 9.97 -39.46 -0.39 -4.31 16 18 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 19 O -0.16 -4.35 9.74 0.72 0.01 -4.34 16 20 C -0.39 -10.37 9.48 30.91 0.29 -10.08 16 21 H 0.10 2.32 5.18 -52.49 -0.27 2.05 16 22 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 23 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 24 Si 0.94 19.39 29.55 -169.99 -5.02 14.36 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 28 C -0.24 -4.95 9.14 -39.47 -0.36 -5.31 16 29 C -0.03 -0.61 9.78 -39.14 -0.38 -0.99 16 30 H 0.08 1.15 6.53 -51.93 -0.34 0.81 16 31 H 0.05 0.57 7.71 -51.93 -0.40 0.17 16 32 H 0.06 0.88 6.96 -51.93 -0.36 0.52 16 33 H 0.38 1.52 9.08 45.56 0.41 1.93 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.76 5.30 -51.93 -0.28 0.48 16 40 H 0.13 1.44 3.85 -52.49 -0.20 1.24 16 41 H 0.12 1.82 7.53 -52.48 -0.40 1.42 16 42 H 0.12 1.56 6.16 -52.49 -0.32 1.23 16 43 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.13 2.65 5.61 -52.49 -0.29 2.35 16 46 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -30.90 370.30 -8.26 -39.16 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.39 Total: 7.67 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -3.31 Total: -17.98 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.26 Total: -30.29 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.38 Total: -18.51 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.90 -8.26 -39.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.770 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds