Wall clock time and date at job start Tue Mar 31 2020 17:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.70286 * 2 1 4 4 C 1.52764 * 109.50642 * 239.89121 * 2 1 3 5 5 H 1.09002 * 109.38589 * 305.63137 * 4 2 1 6 6 O 1.42900 * 109.56792 * 65.67117 * 4 2 1 7 7 C 1.53042 * 109.38173 * 185.70671 * 4 2 1 8 8 C 1.53041 * 109.53754 * 61.23912 * 7 4 2 9 9 C 1.53194 * 109.31318 * 298.63250 * 8 7 4 10 10 N 1.46924 * 109.58728 * 120.36146 * 2 1 3 11 11 C 1.34775 * 120.62923 * 353.41950 * 10 2 1 12 12 O 1.21719 * 120.00032 * 353.86732 * 11 10 2 13 13 C 1.46252 * 119.99790 * 174.14792 * 11 10 2 14 14 C 1.35022 * 120.00018 * 184.81768 * 13 11 10 15 15 C 1.46957 * 120.00104 * 180.02562 * 14 13 11 16 16 C 1.40023 * 120.10074 * 359.72936 * 15 14 13 17 17 C 1.37608 * 119.89484 * 179.72256 * 16 15 14 18 18 C 1.39172 * 120.10026 * 0.56670 * 17 16 15 19 19 O 1.35572 * 119.89841 * 179.69775 * 18 17 16 20 20 C 1.34785 * 117.00197 * 174.65556 * 19 18 17 21 21 H 1.07991 * 119.99784 * 5.03892 * 20 19 18 22 22 C 1.38722 * 119.99673 * 185.03525 * 20 19 18 23 23 N 1.31503 * 119.99967 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99325 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47200 * 60.00199 * 24 22 20 26 26 H 1.48505 * 109.46642 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47266 * 299.99713 * 24 22 20 28 28 C 1.39173 * 120.20741 * 359.68541 * 18 17 16 29 29 C 1.37604 * 120.09769 * 0.03756 * 28 18 17 30 30 H 1.08997 * 109.46717 * 305.50059 * 1 2 3 31 31 H 1.09004 * 109.46669 * 65.49551 * 1 2 3 32 32 H 1.08994 * 109.46866 * 185.50239 * 1 2 3 33 33 H 0.96703 * 113.99449 * 179.97438 * 6 4 2 34 34 H 1.08994 * 109.46450 * 301.21801 * 7 4 2 35 35 H 1.08999 * 109.45109 * 181.24806 * 7 4 2 36 36 H 1.09007 * 109.50040 * 178.68498 * 8 7 4 37 37 H 1.09001 * 109.52777 * 58.60398 * 8 7 4 38 38 H 1.09003 * 109.58808 * 294.84830 * 9 8 7 39 39 H 1.09000 * 109.58948 * 174.42570 * 9 8 7 40 40 H 1.07995 * 120.00135 * 4.82335 * 13 11 10 41 41 H 1.08005 * 119.99864 * 359.97438 * 14 13 11 42 42 H 1.07993 * 120.05320 * 359.97213 * 16 15 14 43 43 H 1.08001 * 119.94594 * 180.27172 * 17 16 15 44 44 H 0.97000 * 119.99552 * 180.02562 * 23 22 20 45 45 H 1.07995 * 119.95408 * 180.02562 * 28 18 17 46 46 H 1.08007 * 120.04696 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7223 -1.2457 5 1 1.5963 -1.7167 -1.2945 6 8 1.6771 0.0198 -2.4116 7 6 3.5638 -0.8461 -1.1728 8 6 3.9523 -1.6687 0.0578 9 6 3.4645 -0.9521 1.3209 10 7 2.0226 -0.6997 1.1944 11 6 1.1674 -1.1072 2.1530 12 8 -0.0088 -0.8001 2.0899 13 6 1.6537 -1.9132 3.2723 14 6 0.7826 -2.4033 4.1800 15 6 1.2714 -3.2127 5.3050 16 6 2.6394 -3.4818 5.4344 17 6 3.0930 -4.2355 6.4926 18 6 2.1932 -4.7398 7.4269 19 8 2.6439 -5.4869 8.4644 20 6 1.7389 -5.8525 9.3940 21 1 0.6941 -5.6199 9.2511 22 6 2.1498 -6.5275 10.5342 23 7 3.4222 -6.8102 10.7083 24 14 0.8953 -7.0347 11.8220 25 1 -0.1049 -7.9440 11.2076 26 1 1.5846 -7.7357 12.9351 27 1 0.2095 -5.8270 12.3476 28 6 0.8320 -4.4794 7.2994 29 6 0.3698 -3.7220 6.2477 30 1 -0.3633 0.5968 0.8366 31 1 -0.3633 0.4263 -0.9352 32 1 -0.3633 -1.0229 0.0985 33 1 1.9704 -0.3822 -3.2408 34 1 4.0058 0.1476 -1.0997 35 1 3.9311 -1.3416 -2.0715 36 1 5.0363 -1.7762 0.0963 37 1 3.4909 -2.6544 -0.0024 38 1 3.9930 -0.0051 1.4309 39 1 3.6505 -1.5800 2.1922 40 1 2.7096 -2.1164 3.3727 41 1 -0.2733 -2.1997 4.0798 42 1 3.3378 -3.0952 4.7071 43 1 4.1485 -4.4398 6.5957 44 1 3.7093 -7.2825 11.5054 45 1 0.1374 -4.8724 8.0270 46 1 -0.6867 -3.5200 6.1498 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296804934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:54 Heat of formation + Delta-G solvation = -78.084750 kcal Electronic energy + Delta-G solvation = -27342.029709 eV Core-core repulsion = 23390.353267 eV Total energy + Delta-G solvation = -3951.676442 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63202 -40.81579 -39.14688 -38.44844 -36.80086 -34.90751 -34.18413 -33.60099 -32.60150 -31.95775 -29.59673 -28.19027 -27.49906 -25.80123 -24.69742 -23.69427 -22.98616 -22.22184 -21.12033 -20.13249 -19.38419 -18.80769 -18.51289 -17.98497 -16.84760 -16.63664 -16.40645 -16.34903 -15.87106 -15.70987 -15.61307 -15.39042 -15.32874 -14.77295 -14.66864 -14.37411 -14.14180 -14.05293 -13.81039 -13.57957 -13.35398 -13.24075 -13.22177 -12.99176 -12.68091 -12.56616 -12.54351 -12.24158 -12.15047 -12.01155 -11.79893 -11.71169 -11.21154 -11.09681 -10.84563 -10.55759 -10.15530 -9.88833 -9.63292 -8.67500 -8.51899 -6.17930 -0.24806 0.58919 1.13351 1.35907 1.47250 1.51464 1.88308 2.15544 2.34072 2.86398 3.18053 3.32635 3.42445 3.52413 3.72295 3.79277 3.89647 3.98049 4.06705 4.08122 4.19371 4.25573 4.32809 4.37754 4.47538 4.50657 4.59490 4.65396 4.72147 4.86215 4.92634 4.95108 4.99857 5.01646 5.05890 5.12230 5.20135 5.22319 5.34716 5.35784 5.38882 5.56683 5.63706 5.65826 5.81523 5.97517 6.10636 6.41971 6.83980 6.92407 7.22081 7.69429 8.69810 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.031113 B = 0.001958 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.715274 B =14297.377000 C =15018.736613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.149 3.851 3 H 0.076 0.924 4 C 0.100 3.900 5 H 0.050 0.950 6 O -0.576 6.576 7 C -0.147 4.147 8 C -0.131 4.131 9 C 0.093 3.907 10 N -0.604 5.604 11 C 0.549 3.451 12 O -0.576 6.576 13 C -0.250 4.250 14 C 0.018 3.982 15 C -0.170 4.170 16 C -0.037 4.037 17 C -0.206 4.206 18 C 0.130 3.870 19 O -0.219 6.219 20 C -0.417 4.417 21 H 0.105 0.895 22 C -0.018 4.018 23 N -0.913 5.913 24 Si 1.017 2.983 25 H -0.257 1.257 26 H -0.271 1.271 27 H -0.258 1.258 28 C -0.249 4.249 29 C -0.040 4.040 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.398 0.602 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.104 0.896 40 H 0.153 0.847 41 H 0.124 0.876 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.275 0.725 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 11.323 -23.257 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.045 3.955 3 H 0.094 0.906 4 C 0.040 3.960 5 H 0.068 0.932 6 O -0.384 6.384 7 C -0.184 4.184 8 C -0.169 4.169 9 C -0.029 4.029 10 N -0.338 5.338 11 C 0.343 3.657 12 O -0.459 6.459 13 C -0.270 4.270 14 C -0.002 4.002 15 C -0.171 4.171 16 C -0.054 4.054 17 C -0.225 4.225 18 C 0.078 3.922 19 O -0.124 6.124 20 C -0.493 4.493 21 H 0.122 0.878 22 C -0.217 4.217 23 N -0.549 5.549 24 Si 0.837 3.163 25 H -0.181 1.181 26 H -0.196 1.196 27 H -0.182 1.182 28 C -0.269 4.269 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.249 0.751 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.122 0.878 40 H 0.170 0.830 41 H 0.142 0.858 42 H 0.177 0.823 43 H 0.142 0.858 44 H 0.084 0.916 45 H 0.142 0.858 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.469 11.692 -22.665 25.508 hybrid contribution -0.184 -0.851 0.495 1.001 sum 0.285 10.842 -22.170 24.681 Atomic orbital electron populations 1.21970 0.93523 1.01971 1.00634 1.20934 0.95261 0.95615 0.83659 0.90556 1.21943 0.94954 0.93729 0.85335 0.93175 1.86427 1.81846 1.53299 1.16866 1.22242 0.94559 1.01841 0.99803 1.21911 1.03061 0.98845 0.93121 1.22194 0.78286 1.02068 1.00328 1.47984 1.08463 1.57820 1.19483 1.18553 0.85127 0.79239 0.82792 1.90835 1.18711 1.58420 1.77942 1.22882 1.01603 1.05433 0.97110 1.22170 0.99645 0.88964 0.89410 1.18768 0.93611 1.06211 0.98539 1.21263 0.94952 0.93923 0.95285 1.20424 0.99050 1.05672 0.97346 1.20193 0.93730 0.89611 0.88708 1.83885 1.38607 1.59710 1.30179 1.21847 0.90343 1.38190 0.98908 0.87761 1.26599 0.99477 0.96127 0.99522 1.70137 1.16914 1.39017 1.28882 0.84659 0.76531 0.79121 0.76038 1.18117 1.19596 1.18198 1.21201 0.94876 1.07764 1.03018 1.21310 0.99996 0.92976 0.91557 0.92283 0.92790 0.93712 0.75123 0.90633 0.89429 0.87781 0.91655 0.89714 0.87757 0.83019 0.85821 0.82283 0.85795 0.91589 0.85800 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 7.56 71.98 0.54 -2.47 16 2 C 0.15 2.91 3.18 44.83 0.14 3.05 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.10 1.45 2.98 30.53 0.09 1.54 16 5 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 6 O -0.58 -8.02 12.80 -148.98 -1.91 -9.93 16 7 C -0.15 -1.34 5.51 30.62 0.17 -1.17 16 8 C -0.13 -1.16 6.08 30.67 0.19 -0.97 16 9 C 0.09 1.11 6.35 86.36 0.55 1.66 16 10 N -0.60 -11.67 2.98 -800.96 -2.39 -14.06 16 11 C 0.55 13.89 7.42 86.33 0.64 14.53 16 12 O -0.58 -18.36 11.81 -4.41 -0.05 -18.41 16 13 C -0.25 -5.71 8.75 23.61 0.21 -5.50 16 14 C 0.02 0.48 9.45 23.82 0.23 0.70 16 15 C -0.17 -5.21 5.87 -20.13 -0.12 -5.33 16 16 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 17 C -0.21 -8.02 9.97 22.35 0.22 -7.79 16 18 C 0.13 6.10 6.66 22.72 0.15 6.26 16 19 O -0.22 -12.56 9.74 -20.33 -0.20 -12.76 16 20 C -0.42 -23.33 9.48 67.94 0.64 -22.68 16 21 H 0.11 5.33 5.18 -2.92 -0.02 5.31 16 22 C -0.02 -1.01 5.49 84.86 0.47 -0.54 16 23 N -0.91 -54.01 13.67 21.62 0.30 -53.71 16 24 Si 1.02 41.29 29.55 68.60 2.03 43.32 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 26 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 27 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 28 C -0.25 -10.37 9.14 22.34 0.20 -10.16 16 29 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 30 H 0.06 1.67 6.53 -2.39 -0.02 1.66 16 31 H 0.05 1.22 7.71 -2.38 -0.02 1.20 16 32 H 0.04 1.23 6.96 -2.39 -0.02 1.21 16 33 H 0.40 1.96 9.08 -74.06 -0.67 1.29 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.10 1.07 5.30 -2.39 -0.01 1.06 16 40 H 0.15 2.62 3.85 -2.91 -0.01 2.61 16 41 H 0.12 3.35 7.53 -2.91 -0.02 3.32 16 42 H 0.16 3.40 6.16 -2.91 -0.02 3.38 16 43 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 44 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.12 5.22 5.61 -2.91 -0.02 5.20 16 46 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -73.20 370.30 2.89 -70.31 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.35 Total: 26.14 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.76 Total: -30.90 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -2.09 Total: -67.77 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -2.16 Total: -41.10 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -73.20 2.89 -70.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.775 kcal (2) G-P(sol) polarization free energy of solvation -73.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds