Wall clock time and date at job start Tue Mar 31 2020 17:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.70458 * 2 1 4 4 C 1.52764 * 109.50959 * 239.88710 * 2 1 3 5 5 H 1.09002 * 109.56545 * 65.66883 * 4 2 1 6 6 O 1.42899 * 109.38667 * 305.63110 * 4 2 1 7 7 C 1.53048 * 109.38482 * 185.70503 * 4 2 1 8 8 C 1.53041 * 109.53532 * 61.24083 * 7 4 2 9 9 C 1.53199 * 109.31314 * 298.63585 * 8 7 4 10 10 N 1.46925 * 109.58731 * 120.36079 * 2 1 3 11 11 C 1.34773 * 120.63260 * 353.41726 * 10 2 1 12 12 O 1.21725 * 119.99539 * 4.70879 * 11 10 2 13 13 C 1.46252 * 120.00422 * 184.71122 * 11 10 2 14 14 C 1.35015 * 120.00317 * 185.57267 * 13 11 10 15 15 C 1.46962 * 120.00375 * 179.97438 * 14 13 11 16 16 C 1.40024 * 120.09781 * 0.29202 * 15 14 13 17 17 C 1.37600 * 119.89711 * 180.22857 * 16 15 14 18 18 C 1.39176 * 120.09715 * 359.47531 * 17 16 15 19 19 O 1.35578 * 119.89626 * 180.25094 * 18 17 16 20 20 C 1.34781 * 116.99682 * 354.49981 * 19 18 17 21 21 H 1.08000 * 120.00345 * 5.07492 * 20 19 18 22 22 C 1.38719 * 119.99547 * 185.07631 * 20 19 18 23 23 N 1.31506 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99877 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47321 * 60.00223 * 24 22 20 26 26 H 1.48506 * 109.47463 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47547 * 300.00066 * 24 22 20 28 28 C 1.39168 * 120.20715 * 0.27932 * 18 17 16 29 29 C 1.37597 * 120.10263 * 359.97282 * 28 18 17 30 30 H 1.08999 * 109.47048 * 303.17111 * 1 2 3 31 31 H 1.08999 * 109.46966 * 63.17449 * 1 2 3 32 32 H 1.08996 * 109.47032 * 183.17123 * 1 2 3 33 33 H 0.96703 * 113.99990 * 180.13859 * 6 4 2 34 34 H 1.09001 * 109.45587 * 301.22260 * 7 4 2 35 35 H 1.08996 * 109.46146 * 181.26281 * 7 4 2 36 36 H 1.08996 * 109.49728 * 178.68825 * 8 7 4 37 37 H 1.08995 * 109.52740 * 58.60082 * 8 7 4 38 38 H 1.08999 * 109.58157 * 294.85074 * 9 8 7 39 39 H 1.09000 * 109.70493 * 174.49564 * 9 8 7 40 40 H 1.08005 * 119.99746 * 5.57005 * 13 11 10 41 41 H 1.08005 * 119.99938 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05437 * 359.97438 * 16 15 14 43 43 H 1.07995 * 119.95336 * 179.75348 * 17 16 15 44 44 H 0.97005 * 119.99817 * 179.97438 * 23 22 20 45 45 H 1.08003 * 119.95457 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05339 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1350 6 8 1.4584 -2.0261 -1.3096 7 6 3.5639 -0.8461 -1.1728 8 6 3.9523 -1.6687 0.0579 9 6 3.4644 -0.9520 1.3210 10 7 2.0225 -0.6996 1.1944 11 6 1.1674 -1.1071 2.1531 12 8 -0.0322 -0.9737 1.9953 13 6 1.6806 -1.7096 3.3829 14 6 0.8240 -2.2199 4.2933 15 6 1.3398 -2.8259 5.5288 16 6 2.7189 -2.8696 5.7669 17 6 3.1976 -3.4421 6.9230 18 6 2.3126 -3.9674 7.8599 19 8 2.7884 -4.5260 9.0000 20 6 4.1264 -4.6432 9.1117 21 1 4.7704 -4.2259 8.3518 22 6 4.6764 -5.3000 10.2028 23 7 3.8922 -5.8078 11.1284 24 14 6.5308 -5.4631 10.3574 25 1 7.1443 -4.1116 10.4057 26 1 6.8608 -6.2006 11.6034 27 1 7.0618 -6.2062 9.1864 28 6 0.9408 -3.9216 7.6300 29 6 0.4533 -3.3557 6.4744 30 1 -0.3633 0.5623 0.8602 31 1 -0.3633 0.4638 -0.9171 32 1 -0.3633 -1.0261 0.0568 33 1 1.7392 -2.5449 -2.0757 34 1 4.0057 0.1477 -1.0996 35 1 3.9314 -1.3414 -2.0714 36 1 5.0363 -1.7761 0.0964 37 1 3.4909 -2.6543 -0.0022 38 1 3.9929 -0.0051 1.4309 39 1 3.6506 -1.5779 2.1938 40 1 2.7450 -1.7464 3.5629 41 1 -0.2403 -2.1829 4.1135 42 1 3.4062 -2.4583 5.0424 43 1 4.2613 -3.4799 7.1057 44 1 4.2768 -6.2674 11.8912 45 1 0.2577 -4.3309 8.3596 46 1 -0.6114 -3.3202 6.2970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296804939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:59 Heat of formation + Delta-G solvation = -55.418538 kcal Electronic energy + Delta-G solvation = -27647.861768 eV Core-core repulsion = 23697.168206 eV Total energy + Delta-G solvation = -3950.693562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62664 -39.17488 -38.16412 -36.85046 -35.59691 -33.57425 -32.74208 -32.37464 -31.65787 -30.35101 -28.31494 -27.36007 -25.57707 -24.83983 -23.64700 -22.26114 -21.97215 -21.12233 -19.86899 -18.37410 -18.16490 -17.59057 -17.15043 -16.65607 -15.87880 -15.72007 -15.27431 -14.81802 -14.65031 -14.59901 -14.38977 -13.84363 -13.79303 -13.73680 -13.41233 -13.24470 -12.90884 -12.88599 -12.64681 -12.35063 -12.09066 -11.92694 -11.75717 -11.75148 -11.53179 -11.34151 -11.27900 -11.09883 -10.95224 -10.85880 -10.71997 -10.54886 -10.14386 -9.54362 -9.47309 -8.91045 -8.84783 -8.56209 -8.36302 -7.08491 -6.63702 -4.18916 1.12948 2.15190 2.60346 2.97965 3.03753 3.05726 3.08014 3.63757 3.82824 3.91273 4.39834 4.42754 4.53166 4.56602 4.73890 4.85098 4.94171 5.04181 5.09214 5.11179 5.20995 5.24039 5.32685 5.40365 5.44897 5.53343 5.57371 5.60462 5.69909 5.73660 5.79603 5.96444 6.04229 6.11688 6.14877 6.30889 6.53566 6.58356 6.61811 6.75872 6.79146 6.96397 7.12839 7.25157 7.31295 7.39026 7.53493 7.66030 7.81360 8.43944 8.80852 9.48454 10.52964 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019118 B = 0.002261 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.267669 B =12382.388914 C =13529.377911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.077 0.923 4 C 0.092 3.908 5 H 0.061 0.939 6 O -0.550 6.550 7 C -0.153 4.153 8 C -0.132 4.132 9 C 0.107 3.893 10 N -0.605 5.605 11 C 0.561 3.439 12 O -0.548 6.548 13 C -0.283 4.283 14 C 0.035 3.965 15 C -0.196 4.196 16 C -0.039 4.039 17 C -0.242 4.242 18 C 0.166 3.834 19 O -0.163 6.163 20 C -0.394 4.394 21 H 0.096 0.904 22 C 0.042 3.958 23 N -0.853 5.853 24 Si 0.944 3.056 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.268 1.268 28 C -0.199 4.199 29 C -0.041 4.041 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.372 0.628 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.274 0.726 45 H 0.121 0.879 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 9.583 -22.448 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.049 3.951 3 H 0.095 0.905 4 C 0.032 3.968 5 H 0.079 0.921 6 O -0.355 6.355 7 C -0.191 4.191 8 C -0.170 4.170 9 C -0.016 4.016 10 N -0.338 5.338 11 C 0.355 3.645 12 O -0.428 6.428 13 C -0.303 4.303 14 C 0.015 3.985 15 C -0.197 4.197 16 C -0.057 4.057 17 C -0.261 4.261 18 C 0.110 3.890 19 O -0.064 6.064 20 C -0.469 4.469 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.485 5.485 24 Si 0.768 3.232 25 H -0.193 1.193 26 H -0.201 1.201 27 H -0.193 1.193 28 C -0.218 4.218 29 C -0.059 4.059 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.100 0.900 33 H 0.218 0.782 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.130 0.870 43 H 0.148 0.852 44 H 0.084 0.916 45 H 0.139 0.861 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.275 9.627 -21.498 23.557 hybrid contribution 1.595 -0.227 -0.555 1.704 sum 1.870 9.400 -22.053 24.046 Atomic orbital electron populations 1.22109 0.91884 1.04683 0.99986 1.21156 0.96899 0.93826 0.83184 0.90535 1.22180 0.91704 0.85227 0.97728 0.92078 1.86660 1.71120 1.27195 1.50483 1.22247 0.96573 1.01329 0.98948 1.21823 1.00889 1.00195 0.94126 1.21776 0.80510 1.00334 0.99015 1.47781 1.07084 1.58765 1.20215 1.18311 0.85686 0.77215 0.83277 1.90814 1.15513 1.56622 1.79887 1.22603 1.00266 1.11062 0.96404 1.22272 0.99196 0.87102 0.89911 1.18476 0.93364 1.11095 0.96782 1.20973 0.94005 0.95152 0.95575 1.21084 1.00484 1.07970 0.96593 1.19606 0.92731 0.90653 0.86004 1.83909 1.25208 1.66470 1.30819 1.21410 0.78611 1.37559 1.09342 0.88650 1.25385 1.00917 0.95406 0.94746 1.70005 1.35932 1.32728 1.09869 0.85725 0.79971 0.79061 0.78421 1.19285 1.20094 1.19266 1.20155 0.92848 1.08976 0.99818 1.20872 0.98273 0.94514 0.92254 0.91016 0.94763 0.89954 0.78215 0.90944 0.91501 0.90810 0.90606 0.91731 0.88894 0.85920 0.85949 0.87003 0.85214 0.91564 0.86086 0.86393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 7.32 37.16 0.27 -1.34 16 2 C 0.15 1.60 3.27 -67.82 -0.22 1.38 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.09 0.75 3.30 -26.83 -0.09 0.66 16 5 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 6 O -0.55 -5.34 11.66 -35.23 -0.41 -5.75 16 7 C -0.15 -0.98 5.61 -26.69 -0.15 -1.13 16 8 C -0.13 -1.01 5.94 -26.61 -0.16 -1.16 16 9 C 0.11 0.97 6.31 -3.71 -0.02 0.95 16 10 N -0.60 -7.20 2.92 -167.16 -0.49 -7.69 16 11 C 0.56 8.42 7.53 -13.04 -0.10 8.33 16 12 O -0.55 -9.58 11.64 5.17 0.06 -9.52 16 13 C -0.28 -4.11 8.64 -37.51 -0.32 -4.43 16 14 C 0.03 0.55 9.45 -37.20 -0.35 0.20 16 15 C -0.20 -3.41 5.87 -105.02 -0.62 -4.02 16 16 C -0.04 -0.69 9.40 -39.15 -0.37 -1.06 16 17 C -0.24 -5.00 9.14 -39.47 -0.36 -5.36 16 18 C 0.17 3.85 6.66 -38.89 -0.26 3.59 16 19 O -0.16 -4.45 9.74 0.72 0.01 -4.44 16 20 C -0.39 -10.46 9.48 30.91 0.29 -10.17 16 21 H 0.10 2.31 5.18 -52.49 -0.27 2.04 16 22 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 23 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 24 Si 0.94 19.45 29.55 -169.99 -5.02 14.43 16 25 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 26 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 27 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 28 C -0.20 -4.05 9.97 -39.47 -0.39 -4.44 16 29 C -0.04 -0.72 9.78 -39.15 -0.38 -1.10 16 30 H 0.07 1.01 6.69 -51.93 -0.35 0.67 16 31 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.27 6.30 -51.93 -0.33 0.94 16 33 H 0.37 2.04 9.08 45.56 0.41 2.45 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.70 7.61 -51.93 -0.40 0.31 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.86 5.43 -51.93 -0.28 0.58 16 40 H 0.12 1.58 4.05 -52.48 -0.21 1.36 16 41 H 0.12 1.90 7.53 -52.48 -0.40 1.51 16 42 H 0.11 1.65 6.16 -52.49 -0.32 1.33 16 43 H 0.13 2.63 5.62 -52.49 -0.29 2.34 16 44 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.12 2.36 8.06 -52.48 -0.42 1.93 16 46 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -31.86 368.74 -8.24 -40.10 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.38 Total: 8.61 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -3.33 Total: -18.12 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.27 Total: -30.87 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.34 Total: -19.71 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.86 -8.24 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.321 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds