Wall clock time and date at job start Tue Mar 31 2020 17:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.70458 * 2 1 4 4 C 1.52764 * 109.50959 * 239.88710 * 2 1 3 5 5 H 1.09002 * 109.56545 * 65.66883 * 4 2 1 6 6 O 1.42899 * 109.38667 * 305.63110 * 4 2 1 7 7 C 1.53048 * 109.38482 * 185.70503 * 4 2 1 8 8 C 1.53041 * 109.53532 * 61.24083 * 7 4 2 9 9 C 1.53199 * 109.31314 * 298.63585 * 8 7 4 10 10 N 1.46925 * 109.58731 * 120.36079 * 2 1 3 11 11 C 1.34773 * 120.63260 * 353.41726 * 10 2 1 12 12 O 1.21725 * 119.99539 * 4.70879 * 11 10 2 13 13 C 1.46252 * 120.00422 * 184.71122 * 11 10 2 14 14 C 1.35015 * 120.00317 * 185.57267 * 13 11 10 15 15 C 1.46962 * 120.00375 * 179.97438 * 14 13 11 16 16 C 1.40024 * 120.09781 * 0.29202 * 15 14 13 17 17 C 1.37600 * 119.89711 * 180.22857 * 16 15 14 18 18 C 1.39176 * 120.09715 * 359.47531 * 17 16 15 19 19 O 1.35578 * 119.89626 * 180.25094 * 18 17 16 20 20 C 1.34781 * 116.99682 * 354.49981 * 19 18 17 21 21 H 1.08000 * 120.00345 * 5.07492 * 20 19 18 22 22 C 1.38719 * 119.99547 * 185.07631 * 20 19 18 23 23 N 1.31506 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99877 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47321 * 60.00223 * 24 22 20 26 26 H 1.48506 * 109.47463 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47547 * 300.00066 * 24 22 20 28 28 C 1.39168 * 120.20715 * 0.27932 * 18 17 16 29 29 C 1.37597 * 120.10263 * 359.97282 * 28 18 17 30 30 H 1.08999 * 109.47048 * 303.17111 * 1 2 3 31 31 H 1.08999 * 109.46966 * 63.17449 * 1 2 3 32 32 H 1.08996 * 109.47032 * 183.17123 * 1 2 3 33 33 H 0.96703 * 113.99990 * 180.13859 * 6 4 2 34 34 H 1.09001 * 109.45587 * 301.22260 * 7 4 2 35 35 H 1.08996 * 109.46146 * 181.26281 * 7 4 2 36 36 H 1.08996 * 109.49728 * 178.68825 * 8 7 4 37 37 H 1.08995 * 109.52740 * 58.60082 * 8 7 4 38 38 H 1.08999 * 109.58157 * 294.85074 * 9 8 7 39 39 H 1.09000 * 109.70493 * 174.49564 * 9 8 7 40 40 H 1.08005 * 119.99746 * 5.57005 * 13 11 10 41 41 H 1.08005 * 119.99938 * 359.97438 * 14 13 11 42 42 H 1.08001 * 120.05437 * 359.97438 * 16 15 14 43 43 H 1.07995 * 119.95336 * 179.75348 * 17 16 15 44 44 H 0.97005 * 119.99817 * 179.97438 * 23 22 20 45 45 H 1.08003 * 119.95457 * 179.97438 * 28 18 17 46 46 H 1.07997 * 120.05339 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2456 5 1 1.7632 -0.1564 -2.1350 6 8 1.4584 -2.0261 -1.3096 7 6 3.5639 -0.8461 -1.1728 8 6 3.9523 -1.6687 0.0579 9 6 3.4644 -0.9520 1.3210 10 7 2.0225 -0.6996 1.1944 11 6 1.1674 -1.1071 2.1531 12 8 -0.0322 -0.9737 1.9953 13 6 1.6806 -1.7096 3.3829 14 6 0.8240 -2.2199 4.2933 15 6 1.3398 -2.8259 5.5288 16 6 2.7189 -2.8696 5.7669 17 6 3.1976 -3.4421 6.9230 18 6 2.3126 -3.9674 7.8599 19 8 2.7884 -4.5260 9.0000 20 6 4.1264 -4.6432 9.1117 21 1 4.7704 -4.2259 8.3518 22 6 4.6764 -5.3000 10.2028 23 7 3.8922 -5.8078 11.1284 24 14 6.5308 -5.4631 10.3574 25 1 7.1443 -4.1116 10.4057 26 1 6.8608 -6.2006 11.6034 27 1 7.0618 -6.2062 9.1864 28 6 0.9408 -3.9216 7.6300 29 6 0.4533 -3.3557 6.4744 30 1 -0.3633 0.5623 0.8602 31 1 -0.3633 0.4638 -0.9171 32 1 -0.3633 -1.0261 0.0568 33 1 1.7392 -2.5449 -2.0757 34 1 4.0057 0.1477 -1.0996 35 1 3.9314 -1.3414 -2.0714 36 1 5.0363 -1.7761 0.0964 37 1 3.4909 -2.6543 -0.0022 38 1 3.9929 -0.0051 1.4309 39 1 3.6506 -1.5779 2.1938 40 1 2.7450 -1.7464 3.5629 41 1 -0.2403 -2.1829 4.1135 42 1 3.4062 -2.4583 5.0424 43 1 4.2613 -3.4799 7.1057 44 1 4.2768 -6.2674 11.8912 45 1 0.2577 -4.3309 8.3596 46 1 -0.6114 -3.3202 6.2970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296804939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:58 Heat of formation + Delta-G solvation = -76.402213 kcal Electronic energy + Delta-G solvation = -27648.771688 eV Core-core repulsion = 23697.168206 eV Total energy + Delta-G solvation = -3951.603482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57325 -40.82009 -39.12112 -38.43213 -36.41169 -34.91548 -34.17118 -33.49696 -32.64887 -31.90793 -29.71315 -28.22427 -27.37558 -25.75490 -24.81252 -23.69194 -23.03173 -22.13892 -20.93743 -19.93920 -19.48995 -19.03266 -18.10352 -17.75077 -16.86088 -16.63291 -16.41423 -16.18755 -16.07958 -15.71536 -15.60328 -15.37148 -15.23588 -15.00651 -14.47063 -14.28604 -14.06493 -13.91875 -13.71258 -13.61032 -13.43845 -13.29921 -13.15412 -12.66604 -12.63692 -12.47450 -12.41294 -12.34278 -12.15354 -12.06838 -11.94546 -11.52590 -11.18873 -11.08444 -10.73604 -10.54479 -10.04386 -9.89637 -9.48679 -8.67043 -8.50951 -6.17489 -0.23188 0.58120 1.15549 1.36670 1.48749 1.53002 2.05709 2.16517 2.40853 2.87375 3.18115 3.30708 3.43274 3.66307 3.78937 3.86686 3.91156 3.97834 4.09522 4.10592 4.21013 4.32023 4.39466 4.45617 4.48393 4.49180 4.60350 4.72611 4.74814 4.83639 4.93223 4.97772 5.02397 5.03942 5.10221 5.17454 5.19451 5.27973 5.33125 5.38982 5.48436 5.58929 5.62900 5.79952 5.81918 5.97784 6.10101 6.50784 6.92981 6.94129 7.31354 7.70410 8.71076 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019118 B = 0.002261 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.267669 B =12382.388914 C =13529.377911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.142 3.858 3 H 0.100 0.900 4 C 0.092 3.908 5 H 0.082 0.918 6 O -0.578 6.578 7 C -0.147 4.147 8 C -0.129 4.129 9 C 0.096 3.904 10 N -0.599 5.599 11 C 0.547 3.453 12 O -0.579 6.579 13 C -0.250 4.250 14 C 0.014 3.986 15 C -0.170 4.170 16 C -0.039 4.039 17 C -0.245 4.245 18 C 0.130 3.870 19 O -0.220 6.220 20 C -0.417 4.417 21 H 0.108 0.892 22 C -0.020 4.020 23 N -0.916 5.916 24 Si 1.020 2.980 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.255 1.255 28 C -0.209 4.209 29 C -0.040 4.040 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.388 0.612 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.146 0.854 41 H 0.124 0.876 42 H 0.150 0.850 43 H 0.129 0.871 44 H 0.275 0.725 45 H 0.119 0.881 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 11.646 -26.573 29.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.039 3.961 3 H 0.118 0.882 4 C 0.033 3.967 5 H 0.099 0.901 6 O -0.386 6.386 7 C -0.185 4.185 8 C -0.167 4.167 9 C -0.025 4.025 10 N -0.331 5.331 11 C 0.340 3.660 12 O -0.462 6.462 13 C -0.271 4.271 14 C -0.006 4.006 15 C -0.171 4.171 16 C -0.056 4.056 17 C -0.264 4.264 18 C 0.078 3.922 19 O -0.125 6.125 20 C -0.493 4.493 21 H 0.126 0.874 22 C -0.219 4.219 23 N -0.552 5.552 24 Si 0.838 3.162 25 H -0.179 1.179 26 H -0.198 1.198 27 H -0.179 1.179 28 C -0.228 4.228 29 C -0.058 4.058 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.237 0.763 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.167 0.833 43 H 0.147 0.853 44 H 0.084 0.916 45 H 0.137 0.863 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.237 11.727 -25.720 28.356 hybrid contribution 0.728 -0.602 0.186 0.963 sum 2.965 11.125 -25.534 28.009 Atomic orbital electron populations 1.21904 0.93764 1.02204 0.99918 1.21428 0.95486 0.95382 0.83785 0.88225 1.22228 0.92852 0.84670 0.96996 0.90062 1.86618 1.71918 1.28186 1.51844 1.22223 0.94992 1.02176 0.99064 1.21805 1.01912 0.99119 0.93903 1.22079 0.78764 1.01772 0.99931 1.47903 1.08062 1.57378 1.19735 1.18492 0.85694 0.77676 0.84118 1.90829 1.16933 1.57897 1.80542 1.22924 1.01245 1.07545 0.95351 1.22163 0.99658 0.89008 0.89767 1.18783 0.93311 1.08320 0.96678 1.21309 0.94826 0.94377 0.95133 1.21212 1.00261 1.07912 0.97055 1.20155 0.94224 0.91546 0.86299 1.83894 1.25589 1.69827 1.33238 1.21896 0.79057 1.38230 1.10122 0.87439 1.26657 1.06279 0.94815 0.94109 1.70155 1.38299 1.35575 1.11207 0.84631 0.73280 0.79587 0.78661 1.17921 1.19813 1.17943 1.20380 0.92087 1.09384 1.00931 1.21232 1.00186 0.93328 0.91011 0.93311 0.92800 0.93315 0.76297 0.89378 0.89704 0.88759 0.92579 0.89426 0.89092 0.83660 0.85772 0.83279 0.85293 0.91623 0.86258 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 7.32 71.98 0.53 -2.32 16 2 C 0.14 2.54 3.27 44.83 0.15 2.69 16 3 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 4 C 0.09 1.16 3.30 30.53 0.10 1.26 16 5 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 6 O -0.58 -9.85 11.66 -148.98 -1.74 -11.58 16 7 C -0.15 -1.18 5.61 30.62 0.17 -1.01 16 8 C -0.13 -1.42 5.94 30.67 0.18 -1.24 16 9 C 0.10 1.35 6.31 86.36 0.54 1.89 16 10 N -0.60 -12.41 2.92 -800.97 -2.34 -14.75 16 11 C 0.55 15.21 7.53 86.33 0.65 15.86 16 12 O -0.58 -19.75 11.64 -4.43 -0.05 -19.80 16 13 C -0.25 -6.47 8.64 23.61 0.20 -6.26 16 14 C 0.01 0.40 9.45 23.82 0.23 0.63 16 15 C -0.17 -5.52 5.87 -20.13 -0.12 -5.64 16 16 C -0.04 -1.28 9.40 22.55 0.21 -1.07 16 17 C -0.25 -10.11 9.14 22.34 0.20 -9.90 16 18 C 0.13 6.25 6.66 22.72 0.15 6.40 16 19 O -0.22 -12.84 9.74 -20.35 -0.20 -13.04 16 20 C -0.42 -23.34 9.48 67.93 0.64 -22.70 16 21 H 0.11 5.40 5.18 -2.91 -0.02 5.39 16 22 C -0.02 -1.10 5.49 84.86 0.47 -0.63 16 23 N -0.92 -54.71 13.67 21.62 0.30 -54.41 16 24 Si 1.02 40.94 29.55 68.60 2.03 42.97 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 28 C -0.21 -8.71 9.97 22.34 0.22 -8.48 16 29 C -0.04 -1.35 9.78 22.55 0.22 -1.13 16 30 H 0.05 1.35 6.69 -2.39 -0.02 1.33 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.48 6.30 -2.39 -0.02 1.47 16 33 H 0.39 3.29 9.08 -74.06 -0.67 2.62 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.86 7.61 -2.39 -0.02 0.84 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.09 1.28 5.43 -2.39 -0.01 1.27 16 40 H 0.15 3.06 4.05 -2.91 -0.01 3.05 16 41 H 0.12 3.62 7.53 -2.91 -0.02 3.60 16 42 H 0.15 3.75 6.16 -2.91 -0.02 3.73 16 43 H 0.13 5.26 5.62 -2.91 -0.02 5.24 16 44 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 45 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 46 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -75.77 368.74 3.10 -72.67 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.35 Total: 29.60 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 4.76 Total: -31.65 kcal Atomic # 7 Polarization: -67.11 SS G_CDS: -2.04 Total: -69.16 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -1.99 Total: -44.42 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -75.77 3.10 -72.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296804939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.736 kcal (2) G-P(sol) polarization free energy of solvation -75.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds