Wall clock time and date at job start Tue Mar 31 2020 17:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.74485 * 2 1 4 4 O 1.43171 * 109.71516 * 239.39780 * 2 1 3 5 5 C 1.36111 * 116.69614 * 194.05733 * 4 2 1 6 6 C 1.38704 * 119.39408 * 197.18803 * 5 4 2 7 7 C 1.38199 * 120.06486 * 180.18484 * 6 5 4 8 8 C 1.38253 * 120.11316 * 359.97438 * 7 6 5 9 9 C 1.38200 * 120.11462 * 359.93768 * 8 7 6 10 10 C 1.38706 * 120.06418 * 0.02562 * 9 8 7 11 11 O 1.36114 * 119.39353 * 180.14936 * 10 9 8 12 12 C 1.43168 * 116.71541 * 197.05842 * 11 10 9 13 13 H 1.08999 * 109.70881 * 73.60455 * 12 11 10 14 14 C 1.50704 * 109.70551 * 194.18071 * 12 11 10 15 15 O 1.21277 * 120.00084 * 217.91260 * 14 12 11 16 16 N 1.34779 * 119.99809 * 37.91052 * 14 12 11 17 17 C 1.46502 * 119.99783 * 175.71599 * 16 14 12 18 18 C 1.50698 * 109.47439 * 89.99587 * 17 16 14 19 19 H 1.08005 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00069 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47156 * 90.00076 * 22 20 18 24 24 H 1.48496 * 109.46907 * 210.00143 * 22 20 18 25 25 H 1.48504 * 109.46977 * 329.99917 * 22 20 18 26 26 C 1.46498 * 120.00133 * 355.71026 * 16 14 12 27 27 C 1.52994 * 109.47204 * 269.22434 * 26 16 14 28 28 C 1.53001 * 117.49790 * 245.08750 * 27 26 16 29 29 C 1.53007 * 117.49874 * 176.43054 * 27 26 16 30 30 H 1.08994 * 109.47381 * 295.02981 * 1 2 3 31 31 H 1.09008 * 109.47030 * 55.02210 * 1 2 3 32 32 H 1.08996 * 109.47353 * 175.02073 * 1 2 3 33 33 H 1.07997 * 119.96413 * 0.16263 * 6 5 4 34 34 H 1.07999 * 119.93895 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.93924 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.96220 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47048 * 209.99824 * 17 16 14 38 38 H 1.09000 * 109.47080 * 329.99919 * 17 16 14 39 39 H 0.96997 * 120.00429 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46922 * 29.22646 * 26 16 14 41 41 H 1.08997 * 109.46967 * 149.22525 * 26 16 14 42 42 H 1.08999 * 115.55511 * 30.76003 * 27 26 16 43 43 H 1.08994 * 117.50190 * 0.02562 * 28 27 26 44 44 H 1.09006 * 117.49482 * 145.02347 * 28 27 26 45 45 H 1.08998 * 117.49877 * 214.98311 * 29 27 26 46 46 H 1.09002 * 117.49534 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0129 -0.6861 -1.1601 5 6 3.3297 -1.0308 -1.1627 6 6 3.9442 -1.3624 -2.3611 7 6 5.2795 -1.7182 -2.3793 8 6 6.0064 -1.7441 -1.2036 9 6 5.4007 -1.4131 -0.0063 10 6 4.0610 -1.0544 0.0188 11 8 3.4790 -0.7279 1.2051 12 6 2.0478 -0.7350 1.2433 13 1 1.6851 -1.7628 1.2409 14 6 1.5692 -0.0302 2.4865 15 8 0.6024 -0.4491 3.0869 16 7 2.2157 1.0657 2.9310 17 6 1.6962 1.8053 4.0840 18 6 2.2946 1.2477 5.3497 19 1 2.9925 0.4249 5.3001 20 6 1.9520 1.7886 6.5707 21 7 1.1026 2.7908 6.6310 22 14 2.6944 1.0979 8.1396 23 1 3.9531 1.8212 8.4519 24 1 1.7339 1.2698 9.2590 25 1 2.9861 -0.3465 7.9551 26 6 3.4380 1.5172 2.2613 27 6 4.6532 0.8658 2.9244 28 6 5.6394 1.7840 3.6491 29 6 6.0271 1.1467 2.3124 30 1 -0.3634 0.4348 0.9311 31 1 -0.3633 0.5892 -0.8421 32 1 -0.3634 -1.0237 -0.0892 33 1 3.3785 -1.3429 -3.2809 34 1 5.7558 -1.9764 -3.3135 35 1 7.0497 -2.0230 -1.2209 36 1 5.9710 -1.4338 0.9105 37 1 1.9617 2.8583 3.9897 38 1 0.6114 1.7060 4.1206 39 1 0.8613 3.1711 7.4900 40 1 3.4021 1.2332 1.2096 41 1 3.5174 2.6012 2.3424 42 1 4.4836 -0.1244 3.3473 43 1 5.4222 2.8521 3.6539 44 1 6.1188 1.3976 4.5486 45 1 6.7614 0.3414 2.3330 46 1 6.0651 1.7953 1.4372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299009213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:04 Heat of formation + Delta-G solvation = -41.801176 kcal Electronic energy + Delta-G solvation = -30267.896432 eV Core-core repulsion = 26317.793364 eV Total energy + Delta-G solvation = -3950.103069 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63233 -39.26541 -37.74231 -37.24028 -36.92947 -34.45802 -32.99721 -32.41845 -30.77430 -29.15791 -28.23725 -27.22589 -25.78702 -23.83952 -23.00214 -22.62165 -21.91661 -21.09335 -20.38117 -19.28392 -18.65274 -17.58961 -16.99922 -16.51159 -15.95518 -15.83159 -15.29069 -15.06852 -14.75504 -14.63315 -14.50048 -14.13828 -14.02537 -13.88765 -13.42576 -13.33687 -12.86560 -12.59656 -12.44728 -12.25701 -12.16081 -11.96324 -11.79269 -11.39246 -11.31775 -11.22905 -11.13100 -10.92462 -10.83361 -10.63906 -10.45163 -10.25455 -9.85730 -9.61103 -9.42819 -9.15599 -8.70363 -8.42981 -8.11009 -7.80044 -6.04458 -4.07130 1.21381 1.23167 2.62221 2.98068 3.30392 3.34381 3.37345 3.42027 3.64564 3.72010 4.16248 4.30469 4.44922 4.55790 4.64195 4.69730 4.88675 4.95751 5.14800 5.17359 5.26919 5.28045 5.32323 5.33548 5.36599 5.53826 5.58283 5.66836 5.80756 5.83429 5.93972 5.98607 6.03491 6.07051 6.14021 6.15555 6.35231 6.36796 6.51515 6.54158 6.76237 6.86924 6.96982 7.32209 7.36489 7.44255 7.91700 8.21264 8.23152 8.72531 8.97826 9.56958 11.04253 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.004359 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.249193 B = 6421.343761 C = 7584.356402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.064 3.936 3 H 0.090 0.910 4 O -0.302 6.302 5 C 0.049 3.951 6 C -0.117 4.117 7 C -0.121 4.121 8 C -0.119 4.119 9 C -0.107 4.107 10 C 0.055 3.945 11 O -0.279 6.279 12 C 0.035 3.965 13 H 0.109 0.891 14 C 0.524 3.476 15 O -0.521 6.521 16 N -0.577 5.577 17 C 0.246 3.754 18 C -0.514 4.514 19 H 0.060 0.940 20 C 0.061 3.939 21 N -0.897 5.897 22 Si 0.895 3.105 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.147 3.853 27 C -0.128 4.128 28 C -0.171 4.171 29 C -0.186 4.186 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.262 0.738 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.421 -5.106 -18.224 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.107 0.893 4 O -0.217 6.217 5 C 0.003 3.997 6 C -0.136 4.136 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.126 4.126 10 C 0.010 3.990 11 O -0.193 6.193 12 C -0.025 4.025 13 H 0.126 0.874 14 C 0.307 3.693 15 O -0.398 6.398 16 N -0.307 5.307 17 C 0.127 3.873 18 C -0.553 4.553 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.537 5.537 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.023 3.977 27 C -0.147 4.147 28 C -0.208 4.208 29 C -0.223 4.223 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.153 0.847 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.729 -5.144 -17.703 19.990 hybrid contribution 0.480 -0.333 1.075 1.224 sum 8.209 -5.478 -16.628 19.336 Atomic orbital electron populations 1.21828 0.90121 1.04198 1.04204 1.23065 0.97582 0.95461 0.83190 0.89273 1.86327 1.21485 1.73187 1.40732 1.18990 0.84414 1.02659 0.93589 1.20403 0.94732 1.02921 0.95503 1.20862 0.93193 1.01351 0.98532 1.20898 1.00057 1.01108 0.91689 1.20485 0.92030 1.00701 0.99387 1.19028 0.93916 1.01692 0.84378 1.86722 1.19405 1.83809 1.29399 1.23716 0.80385 1.02096 0.96346 0.87361 1.19367 0.84309 0.81444 0.84143 1.90758 1.28074 1.64768 1.56183 1.48244 1.23928 1.26720 1.31782 1.19395 0.95844 0.90757 0.81302 1.21353 1.26074 1.17314 0.90587 0.92224 1.24891 0.95123 0.95027 0.98974 1.69919 1.33633 1.24563 1.25571 0.86538 0.78811 0.79477 0.82866 1.20680 1.21193 1.19946 1.21176 0.83342 0.97973 0.95208 1.22458 0.89514 1.00383 1.02380 1.22934 1.03850 0.99067 0.94939 1.22893 0.98895 1.03484 0.97060 0.89041 0.90783 0.90853 0.85116 0.85414 0.85348 0.84749 0.94793 0.93866 0.92796 0.90910 0.91171 0.87750 0.89046 0.89386 0.89616 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.44 37.15 0.35 -1.50 16 2 C 0.06 0.88 2.95 -26.51 -0.08 0.81 16 3 H 0.09 1.21 6.83 -51.93 -0.35 0.86 16 4 O -0.30 -4.16 10.07 -32.87 -0.33 -4.49 16 5 C 0.05 0.64 6.49 -39.14 -0.25 0.38 16 6 C -0.12 -1.27 9.96 -39.42 -0.39 -1.66 16 7 C -0.12 -1.11 10.04 -39.59 -0.40 -1.50 16 8 C -0.12 -1.12 10.04 -39.59 -0.40 -1.52 16 9 C -0.11 -1.24 9.96 -39.42 -0.39 -1.63 16 10 C 0.06 0.75 6.37 -39.14 -0.25 0.50 16 11 O -0.28 -4.28 5.10 -32.88 -0.17 -4.45 16 12 C 0.03 0.56 2.66 -27.66 -0.07 0.49 16 13 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 14 C 0.52 10.58 5.83 -10.98 -0.06 10.52 16 15 O -0.52 -12.50 16.30 5.56 0.09 -12.41 16 16 N -0.58 -11.86 2.46 -175.07 -0.43 -12.29 16 17 C 0.25 6.18 5.17 -5.19 -0.03 6.16 16 18 C -0.51 -14.18 9.39 -34.44 -0.32 -14.50 16 19 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.90 -26.21 13.29 55.43 0.74 -25.47 16 22 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.15 2.48 5.22 -4.05 -0.02 2.46 16 27 C -0.13 -2.11 4.41 -90.62 -0.40 -2.51 16 28 C -0.17 -2.68 10.18 -26.69 -0.27 -2.95 16 29 C -0.19 -2.45 10.25 -26.69 -0.27 -2.72 16 30 H 0.09 1.32 6.83 -51.93 -0.35 0.97 16 31 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.03 0.87 7.90 -51.93 -0.41 0.46 16 38 H 0.04 1.21 7.48 -51.93 -0.39 0.83 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 1.11 4.14 -51.93 -0.21 0.90 16 41 H 0.07 1.16 7.64 -51.93 -0.40 0.77 16 42 H 0.10 1.97 7.77 -51.93 -0.40 1.56 16 43 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -31.22 375.73 -9.54 -40.76 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.71 Total: 3.44 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.36 Total: -7.57 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.31 Total: -37.76 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.41 Total: -21.34 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.22 -9.54 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299009213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.041 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds