Wall clock time and date at job start Tue Mar 31 2020 17:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.74485 * 2 1 4 4 O 1.43171 * 109.71516 * 239.39780 * 2 1 3 5 5 C 1.36111 * 116.69614 * 194.05733 * 4 2 1 6 6 C 1.38704 * 119.39408 * 197.18803 * 5 4 2 7 7 C 1.38199 * 120.06486 * 180.18484 * 6 5 4 8 8 C 1.38253 * 120.11316 * 359.97438 * 7 6 5 9 9 C 1.38200 * 120.11462 * 359.93768 * 8 7 6 10 10 C 1.38706 * 120.06418 * 0.02562 * 9 8 7 11 11 O 1.36114 * 119.39353 * 180.14936 * 10 9 8 12 12 C 1.43168 * 116.71541 * 197.05842 * 11 10 9 13 13 H 1.08999 * 109.70881 * 73.60455 * 12 11 10 14 14 C 1.50704 * 109.70551 * 194.18071 * 12 11 10 15 15 O 1.21277 * 120.00084 * 217.91260 * 14 12 11 16 16 N 1.34779 * 119.99809 * 37.91052 * 14 12 11 17 17 C 1.46502 * 119.99783 * 175.71599 * 16 14 12 18 18 C 1.50698 * 109.47439 * 89.99587 * 17 16 14 19 19 H 1.08005 * 119.99706 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00069 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00311 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00085 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47156 * 90.00076 * 22 20 18 24 24 H 1.48496 * 109.46907 * 210.00143 * 22 20 18 25 25 H 1.48504 * 109.46977 * 329.99917 * 22 20 18 26 26 C 1.46498 * 120.00133 * 355.71026 * 16 14 12 27 27 C 1.52994 * 109.47204 * 269.22434 * 26 16 14 28 28 C 1.53001 * 117.49790 * 245.08750 * 27 26 16 29 29 C 1.53007 * 117.49874 * 176.43054 * 27 26 16 30 30 H 1.08994 * 109.47381 * 295.02981 * 1 2 3 31 31 H 1.09008 * 109.47030 * 55.02210 * 1 2 3 32 32 H 1.08996 * 109.47353 * 175.02073 * 1 2 3 33 33 H 1.07997 * 119.96413 * 0.16263 * 6 5 4 34 34 H 1.07999 * 119.93895 * 179.97438 * 7 6 5 35 35 H 1.08002 * 119.93924 * 179.97438 * 8 7 6 36 36 H 1.07994 * 119.96220 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47048 * 209.99824 * 17 16 14 38 38 H 1.09000 * 109.47080 * 329.99919 * 17 16 14 39 39 H 0.96997 * 120.00429 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.46922 * 29.22646 * 26 16 14 41 41 H 1.08997 * 109.46967 * 149.22525 * 26 16 14 42 42 H 1.08999 * 115.55511 * 30.76003 * 27 26 16 43 43 H 1.08994 * 117.50190 * 0.02562 * 28 27 26 44 44 H 1.09006 * 117.49482 * 145.02347 * 28 27 26 45 45 H 1.08998 * 117.49877 * 214.98311 * 29 27 26 46 46 H 1.09002 * 117.49534 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 8 2.0129 -0.6861 -1.1601 5 6 3.3297 -1.0308 -1.1627 6 6 3.9442 -1.3624 -2.3611 7 6 5.2795 -1.7182 -2.3793 8 6 6.0064 -1.7441 -1.2036 9 6 5.4007 -1.4131 -0.0063 10 6 4.0610 -1.0544 0.0188 11 8 3.4790 -0.7279 1.2051 12 6 2.0478 -0.7350 1.2433 13 1 1.6851 -1.7628 1.2409 14 6 1.5692 -0.0302 2.4865 15 8 0.6024 -0.4491 3.0869 16 7 2.2157 1.0657 2.9310 17 6 1.6962 1.8053 4.0840 18 6 2.2946 1.2477 5.3497 19 1 2.9925 0.4249 5.3001 20 6 1.9520 1.7886 6.5707 21 7 1.1026 2.7908 6.6310 22 14 2.6944 1.0979 8.1396 23 1 3.9531 1.8212 8.4519 24 1 1.7339 1.2698 9.2590 25 1 2.9861 -0.3465 7.9551 26 6 3.4380 1.5172 2.2613 27 6 4.6532 0.8658 2.9244 28 6 5.6394 1.7840 3.6491 29 6 6.0271 1.1467 2.3124 30 1 -0.3634 0.4348 0.9311 31 1 -0.3633 0.5892 -0.8421 32 1 -0.3634 -1.0237 -0.0892 33 1 3.3785 -1.3429 -3.2809 34 1 5.7558 -1.9764 -3.3135 35 1 7.0497 -2.0230 -1.2209 36 1 5.9710 -1.4338 0.9105 37 1 1.9617 2.8583 3.9897 38 1 0.6114 1.7060 4.1206 39 1 0.8613 3.1711 7.4900 40 1 3.4021 1.2332 1.2096 41 1 3.5174 2.6012 2.3424 42 1 4.4836 -0.1244 3.3473 43 1 5.4222 2.8521 3.6539 44 1 6.1188 1.3976 4.5486 45 1 6.7614 0.3414 2.3330 46 1 6.0651 1.7953 1.4372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299009213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:03 Heat of formation + Delta-G solvation = -58.567005 kcal Electronic energy + Delta-G solvation = -30268.623453 eV Core-core repulsion = 26317.793364 eV Total energy + Delta-G solvation = -3950.830090 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.75155 -40.71290 -38.73254 -38.46434 -38.16176 -36.17262 -34.66659 -33.90837 -31.68247 -30.12351 -29.93394 -28.57104 -27.40609 -25.17553 -24.46883 -23.64539 -23.06938 -22.28904 -21.67235 -20.65371 -19.82122 -18.69462 -18.58388 -18.27739 -17.29169 -17.10237 -16.68140 -16.29504 -16.10375 -15.98027 -15.64969 -15.48932 -15.36790 -14.79976 -14.76208 -14.60447 -14.29690 -14.11235 -13.78687 -13.57305 -13.36431 -13.27773 -13.04499 -12.84457 -12.72737 -12.68473 -12.53238 -12.32343 -12.25365 -12.18158 -11.93391 -11.65081 -11.52012 -11.17999 -10.87593 -10.65801 -10.56402 -9.59735 -9.54209 -9.04308 -8.21306 -6.32004 0.37261 0.38658 1.20882 1.35149 1.37257 1.47330 1.88022 2.04469 2.21460 2.40413 2.81514 2.98925 3.06690 3.09625 3.31338 3.52709 3.61452 3.83884 3.90501 4.03951 4.14006 4.20480 4.27145 4.33285 4.45478 4.50300 4.51625 4.60226 4.65450 4.68879 4.79958 4.86962 4.94683 4.99131 5.03288 5.13124 5.18068 5.27054 5.28902 5.35868 5.40320 5.56308 5.59595 5.76184 5.78952 5.88156 6.06923 6.38603 6.53659 6.73886 7.09801 7.37428 8.86647 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.004359 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.249193 B = 6421.343761 C = 7584.356402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.073 3.927 3 H 0.092 0.908 4 O -0.305 6.305 5 C 0.024 3.976 6 C -0.120 4.120 7 C -0.110 4.110 8 C -0.110 4.110 9 C -0.114 4.114 10 C 0.028 3.972 11 O -0.290 6.290 12 C 0.048 3.952 13 H 0.105 0.895 14 C 0.522 3.478 15 O -0.569 6.569 16 N -0.579 5.579 17 C 0.262 3.738 18 C -0.523 4.523 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.928 5.928 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.281 1.281 25 H -0.277 1.277 26 C 0.149 3.851 27 C -0.147 4.147 28 C -0.186 4.186 29 C -0.143 4.143 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.138 0.862 37 H 0.027 0.973 38 H 0.005 0.995 39 H 0.266 0.734 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.411 -5.888 -20.597 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.015 3.985 3 H 0.109 0.891 4 O -0.220 6.220 5 C -0.021 4.021 6 C -0.139 4.139 7 C -0.127 4.127 8 C -0.128 4.128 9 C -0.132 4.132 10 C -0.016 4.016 11 O -0.205 6.205 12 C -0.012 4.012 13 H 0.122 0.878 14 C 0.308 3.692 15 O -0.450 6.450 16 N -0.308 5.308 17 C 0.141 3.859 18 C -0.562 4.562 19 H 0.068 0.932 20 C -0.186 4.186 21 N -0.568 5.568 22 Si 0.783 3.217 23 H -0.190 1.190 24 H -0.207 1.207 25 H -0.202 1.202 26 C 0.027 3.973 27 C -0.166 4.166 28 C -0.223 4.223 29 C -0.180 4.180 30 H 0.086 0.914 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.045 0.955 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.124 0.876 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 10.765 -5.924 -20.115 23.571 hybrid contribution -0.352 -0.147 1.694 1.736 sum 10.413 -6.071 -18.422 22.014 Atomic orbital electron populations 1.21790 0.89563 1.04726 1.03932 1.22948 0.97991 0.95156 0.82357 0.89069 1.86312 1.22342 1.73430 1.39895 1.19324 0.84154 1.04113 0.94482 1.20744 0.95686 1.02251 0.95169 1.21316 0.92340 0.99164 0.99929 1.21310 1.01488 0.99272 0.90758 1.20702 0.91203 1.00702 1.00634 1.19317 0.94837 1.03794 0.83689 1.86676 1.18280 1.84601 1.30944 1.23286 0.81660 1.01359 0.94896 0.87781 1.19984 0.83382 0.80935 0.84914 1.90714 1.30081 1.66014 1.58157 1.48171 1.25180 1.26650 1.30788 1.18876 0.93598 0.90769 0.82642 1.21527 1.25868 1.16981 0.91815 0.93200 1.25691 0.95495 0.95307 1.02127 1.70024 1.34683 1.25628 1.26482 0.85560 0.78589 0.78566 0.78988 1.19044 1.20657 1.20218 1.21350 0.81958 0.98070 0.95934 1.22252 0.90876 0.99175 1.04337 1.22975 1.04178 0.98752 0.96418 1.22953 0.96121 1.02990 0.95951 0.91415 0.88341 0.90479 0.83585 0.81929 0.82160 0.84427 0.95546 0.97645 0.92529 0.88897 0.90987 0.90449 0.89364 0.89949 0.87622 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.44 71.98 0.68 -3.01 16 2 C 0.07 2.01 2.95 30.74 0.09 2.10 16 3 H 0.09 2.46 6.83 -2.39 -0.02 2.45 16 4 O -0.30 -8.04 10.07 -82.59 -0.83 -8.88 16 5 C 0.02 0.58 6.49 22.56 0.15 0.73 16 6 C -0.12 -2.20 9.96 22.37 0.22 -1.98 16 7 C -0.11 -1.49 10.04 22.26 0.22 -1.26 16 8 C -0.11 -1.58 10.04 22.26 0.22 -1.36 16 9 C -0.11 -2.30 9.96 22.37 0.22 -2.08 16 10 C 0.03 0.72 6.37 22.56 0.14 0.86 16 11 O -0.29 -8.88 5.10 -82.63 -0.42 -9.30 16 12 C 0.05 1.61 2.66 30.00 0.08 1.69 16 13 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 14 C 0.52 22.31 5.83 87.66 0.51 22.82 16 15 O -0.57 -29.27 16.30 -3.02 -0.05 -29.32 16 16 N -0.58 -25.03 2.46 -826.17 -2.03 -27.06 16 17 C 0.26 13.95 5.17 85.63 0.44 14.40 16 18 C -0.52 -30.00 9.39 25.60 0.24 -29.76 16 19 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 20 C 0.01 0.72 5.46 84.65 0.46 1.18 16 21 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 22 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 26 C 0.15 5.11 5.22 86.38 0.45 5.56 16 27 C -0.15 -4.84 4.41 -10.79 -0.05 -4.89 16 28 C -0.19 -5.73 10.18 30.62 0.31 -5.42 16 29 C -0.14 -3.43 10.25 30.62 0.31 -3.11 16 30 H 0.07 2.08 6.83 -2.39 -0.02 2.07 16 31 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 36 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.03 1.43 7.90 -2.39 -0.02 1.41 16 38 H 0.01 0.33 7.48 -2.39 -0.02 0.31 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.09 2.81 4.14 -2.39 -0.01 2.80 16 41 H 0.07 2.41 7.64 -2.39 -0.02 2.39 16 42 H 0.08 3.00 7.77 -2.39 -0.02 2.98 16 43 H 0.09 2.75 8.03 -2.39 -0.02 2.73 16 44 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 45 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -71.06 375.73 4.68 -66.38 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.98 Total: 19.56 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.72 Total: -3.53 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.74 Total: -82.47 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.30 Total: -47.49 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -71.06 4.68 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299009213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.817 kcal (2) G-P(sol) polarization free energy of solvation -71.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds