Wall clock time and date at job start Tue Mar 31 2020 17:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35950 * 116.99894 * 2 1 4 4 C 1.38081 * 120.00130 * 0.23515 * 3 2 1 5 5 C 1.39976 * 119.84281 * 180.23351 * 4 3 2 6 6 C 1.46959 * 120.08083 * 179.78745 * 5 4 3 7 7 C 1.35022 * 119.99833 * 179.72023 * 6 5 4 8 8 C 1.46262 * 119.99991 * 180.02562 * 7 6 5 9 9 O 1.21727 * 119.99884 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00190 * 180.02562 * 8 7 6 11 11 C 1.47487 * 125.59254 * 0.03624 * 10 8 7 12 12 C 1.54322 * 107.03895 * 180.99432 * 11 10 8 13 13 C 1.55164 * 103.09699 * 22.24040 * 12 11 10 14 14 H 1.08998 * 111.00423 * 82.48781 * 13 12 11 15 15 C 1.53005 * 111.00141 * 206.29890 * 13 12 11 16 16 C 1.47424 * 125.64872 * 180.02562 * 10 8 7 17 17 C 1.40033 * 119.83667 * 359.50885 * 5 4 3 18 18 C 1.37640 * 120.00165 * 0.25708 * 17 5 4 19 19 C 1.39061 * 120.16421 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.91891 * 180.02562 * 19 18 17 21 21 C 1.34756 * 117.00409 * 354.38120 * 20 19 18 22 22 H 1.08000 * 119.99800 * 5.05977 * 21 20 19 23 23 C 1.38706 * 120.00226 * 185.06090 * 21 20 19 24 24 N 1.31526 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47257 * 90.00271 * 25 23 21 27 27 H 1.48501 * 109.47163 * 210.00071 * 25 23 21 28 28 H 1.48501 * 109.47171 * 330.00026 * 25 23 21 29 29 H 1.08993 * 109.47700 * 60.00545 * 1 2 3 30 30 H 1.09009 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47464 * 299.99785 * 1 2 3 32 32 H 1.08007 * 120.07919 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.00128 * 359.72075 * 6 5 4 34 34 H 1.07997 * 120.00039 * 0.02562 * 7 6 5 35 35 H 1.09003 * 110.03662 * 61.62968 * 11 10 8 36 36 H 1.09005 * 109.96126 * 300.31631 * 11 10 8 37 37 H 1.08993 * 110.72216 * 263.79034 * 12 11 10 38 38 H 1.09001 * 110.72148 * 140.68898 * 12 11 10 39 39 H 1.09000 * 109.47085 * 59.99955 * 15 13 12 40 40 H 1.08999 * 109.47021 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.46986 * 299.99789 * 15 13 12 42 42 H 1.08996 * 110.36930 * 37.08779 * 16 10 8 43 43 H 1.09001 * 110.45691 * 274.80668 * 16 10 8 44 44 H 1.08002 * 119.99904 * 180.23100 * 17 5 4 45 45 H 1.08007 * 119.91805 * 180.02562 * 18 17 5 46 46 H 0.97000 * 119.99928 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2941 2.3694 0.0049 5 6 1.9330 3.6148 -0.0001 6 6 1.1377 4.8506 0.0004 7 6 1.7557 6.0511 0.0013 8 6 0.9643 7.2811 0.0024 9 8 -0.2516 7.2224 0.0019 10 7 1.5811 8.4794 0.0028 11 6 3.0403 8.6937 0.0015 12 6 3.2734 10.2190 0.0281 13 6 1.9457 10.7673 0.6148 14 1 1.9450 10.7069 1.7031 15 6 1.6911 12.2020 0.1480 16 6 0.9092 9.7916 0.0043 17 6 3.3318 3.6803 0.0004 18 6 4.0750 2.5218 0.0004 19 6 3.4404 1.2845 0.0005 20 8 4.1776 0.1462 0.0010 21 6 5.5131 0.2821 -0.1161 22 1 5.9572 1.2666 -0.1226 23 6 6.3175 -0.8423 -0.2283 24 7 5.7767 -2.0412 -0.2209 25 14 8.1688 -0.6539 -0.3913 26 1 8.7870 -0.6518 0.9589 27 1 8.7137 -1.7856 -1.1834 28 1 8.4774 0.6256 -1.0791 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2155 2.3143 0.0092 33 1 0.0590 4.7986 0.0000 34 1 2.8345 6.1032 0.0013 35 1 3.4796 8.2673 -0.9004 36 1 3.4845 8.2354 0.8851 37 1 3.4370 10.6018 -0.9792 38 1 4.1136 10.4695 0.6757 39 1 1.6280 12.2243 -0.9399 40 1 0.7546 12.5620 0.5741 41 1 2.5095 12.8420 0.4777 42 1 0.0113 9.7573 0.6212 43 1 0.6585 10.0925 -1.0129 44 1 3.8275 4.6399 0.0004 45 1 5.1538 2.5739 0.0012 46 1 6.3392 -2.8275 -0.2990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299729937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:18 Heat of formation + Delta-G solvation = -57.496575 kcal Electronic energy + Delta-G solvation = -27097.352964 eV Core-core repulsion = 23146.569292 eV Total energy + Delta-G solvation = -3950.783672 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.07369 -39.68000 -37.76336 -37.67687 -36.50697 -33.27124 -32.90987 -32.20435 -29.88826 -29.75590 -28.80428 -27.13124 -26.30830 -25.47854 -23.74135 -22.70747 -21.73056 -20.76234 -20.30438 -18.59204 -18.19970 -17.81542 -17.06825 -16.51146 -16.05865 -15.50892 -15.21214 -15.11956 -14.83802 -14.63528 -14.06706 -13.99246 -13.87191 -13.65539 -13.59350 -13.49314 -13.17947 -12.84366 -12.72053 -12.33466 -12.16285 -12.10098 -11.80693 -11.72535 -11.45916 -11.39273 -11.12330 -11.07440 -11.03034 -10.98621 -10.78917 -10.69788 -10.51142 -9.80162 -9.58687 -9.41813 -8.87747 -8.68461 -7.98836 -6.91910 -6.62408 -4.13757 1.01855 2.10599 2.52710 2.97670 3.04232 3.05357 3.10303 3.56218 3.82361 3.93906 4.10232 4.29682 4.45391 4.48453 4.85465 4.90181 4.92253 5.00601 5.03345 5.07708 5.22497 5.30515 5.31752 5.41899 5.46370 5.51614 5.54353 5.55353 5.58477 5.62311 5.70587 5.72845 5.73953 5.82943 5.93225 5.99042 6.13480 6.21536 6.43356 6.49588 6.60012 6.84854 6.99802 7.07978 7.25381 7.45919 7.52056 7.78079 8.07098 8.30034 8.80619 9.49582 10.53396 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002420 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.113615 B =11567.671721 C =13559.996428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.035 3.965 7 C -0.274 4.274 8 C 0.571 3.429 9 O -0.559 6.559 10 N -0.623 5.623 11 C 0.101 3.899 12 C -0.129 4.129 13 C -0.108 4.108 14 H 0.084 0.916 15 C -0.141 4.141 16 C 0.111 3.889 17 C -0.059 4.059 18 C -0.225 4.225 19 C 0.148 3.852 20 O -0.147 6.147 21 C -0.391 4.391 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.845 5.845 25 Si 0.945 3.055 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.265 1.265 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 20.490 0.496 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.167 4.167 6 C 0.015 3.985 7 C -0.295 4.295 8 C 0.366 3.634 9 O -0.440 6.440 10 N -0.358 5.358 11 C -0.022 4.022 12 C -0.167 4.167 13 C -0.127 4.127 14 H 0.103 0.897 15 C -0.198 4.198 16 C -0.012 4.012 17 C -0.078 4.078 18 C -0.244 4.244 19 C 0.092 3.908 20 O -0.048 6.048 21 C -0.466 4.466 22 H 0.115 0.885 23 C -0.166 4.166 24 N -0.477 5.477 25 Si 0.769 3.231 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.189 1.189 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.950 19.640 0.488 20.260 hybrid contribution 0.794 0.274 -0.075 0.843 sum -4.157 19.914 0.413 20.348 Atomic orbital electron populations 1.22918 0.80164 1.03074 1.00432 1.86234 1.19577 1.26186 1.89714 1.18044 0.89377 0.84606 1.07296 1.20885 0.98617 0.90908 1.05126 1.18162 0.92777 0.91377 1.14389 1.22239 0.99130 0.90946 0.86174 1.22451 0.99790 0.91367 1.15905 1.18105 0.87184 0.82753 0.75406 1.90774 1.14153 1.87101 1.51945 1.48423 1.07174 1.05432 1.74758 1.22117 0.81302 0.96545 1.02227 1.22730 0.97838 0.94007 1.02110 1.22373 0.94769 0.94851 1.00684 0.89744 1.21692 1.01941 0.94710 1.01477 1.22217 0.96138 0.82045 1.00763 1.20921 0.92494 0.97329 0.97019 1.20828 1.00700 0.90732 1.12155 1.18881 0.88271 0.87650 0.96026 1.83988 1.19718 1.25845 1.75243 1.21514 0.78383 0.95073 1.51640 0.88523 1.25419 1.00910 0.94153 0.96110 1.70050 1.36646 0.97826 1.43135 0.85645 0.79872 0.78701 0.78870 1.19632 1.20053 1.18921 0.93422 0.88961 0.93451 0.85840 0.85988 0.85812 0.91081 0.91098 0.90455 0.89962 0.92282 0.92263 0.92080 0.90614 0.91691 0.86685 0.84505 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.44 16 2 O -0.30 -6.49 10.28 -34.20 -0.35 -6.84 16 3 C 0.05 1.12 6.70 -39.13 -0.26 0.85 16 4 C -0.14 -2.48 8.77 -38.99 -0.34 -2.82 16 5 C -0.17 -2.91 5.87 -105.04 -0.62 -3.52 16 6 C 0.03 0.55 9.45 -37.19 -0.35 0.20 16 7 C -0.27 -4.01 8.93 -37.50 -0.33 -4.34 16 8 C 0.57 8.77 7.77 -13.04 -0.10 8.67 16 9 O -0.56 -10.39 16.49 5.16 0.09 -10.31 16 10 N -0.62 -7.50 3.34 -171.85 -0.57 -8.08 16 11 C 0.10 0.89 6.08 -2.81 -0.02 0.87 16 12 C -0.13 -0.82 6.41 -24.89 -0.16 -0.98 16 13 C -0.11 -0.75 3.64 -88.48 -0.32 -1.07 16 14 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 15 C -0.14 -0.74 9.31 37.16 0.35 -0.40 16 16 C 0.11 1.11 6.38 -2.54 -0.02 1.09 16 17 C -0.06 -1.05 9.40 -39.13 -0.37 -1.42 16 18 C -0.22 -4.64 9.14 -39.49 -0.36 -5.00 16 19 C 0.15 3.54 6.67 -38.76 -0.26 3.28 16 20 O -0.15 -4.12 9.52 -13.93 -0.13 -4.26 16 21 C -0.39 -10.45 9.48 30.91 0.29 -10.16 16 22 H 0.10 2.34 5.18 -52.49 -0.27 2.06 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 24 N -0.84 -23.96 13.67 55.48 0.76 -23.20 16 25 Si 0.95 19.47 29.55 -169.99 -5.02 14.44 16 26 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 28 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 29 H 0.05 0.63 7.67 -51.93 -0.40 0.23 16 30 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 32 H 0.12 1.90 6.28 -52.48 -0.33 1.57 16 33 H 0.12 1.90 7.52 -52.49 -0.39 1.51 16 34 H 0.12 1.59 5.37 -52.49 -0.28 1.31 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 38 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.31 8.07 -51.93 -0.42 -0.11 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.83 8.04 -51.93 -0.42 0.42 16 43 H 0.06 0.62 7.98 -51.93 -0.41 0.21 16 44 H 0.12 1.68 6.15 -52.49 -0.32 1.36 16 45 H 0.14 2.74 5.62 -52.48 -0.29 2.44 16 46 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 382.35 15.07 5.76 5.76 Total: -1.00 -32.93 382.35 -7.91 -40.83 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.45 Total: 3.97 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.98 Total: -12.33 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.19 Total: -31.28 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.40 Total: -21.40 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.93 -7.91 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299729937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.662 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds