Wall clock time and date at job start Tue Mar 31 2020 17:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35950 * 116.99894 * 2 1 4 4 C 1.38081 * 120.00130 * 0.23515 * 3 2 1 5 5 C 1.39976 * 119.84281 * 180.23351 * 4 3 2 6 6 C 1.46959 * 120.08083 * 179.78745 * 5 4 3 7 7 C 1.35022 * 119.99833 * 179.72023 * 6 5 4 8 8 C 1.46262 * 119.99991 * 180.02562 * 7 6 5 9 9 O 1.21727 * 119.99884 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00190 * 180.02562 * 8 7 6 11 11 C 1.47487 * 125.59254 * 0.03624 * 10 8 7 12 12 C 1.54322 * 107.03895 * 180.99432 * 11 10 8 13 13 C 1.55164 * 103.09699 * 22.24040 * 12 11 10 14 14 H 1.08998 * 111.00423 * 82.48781 * 13 12 11 15 15 C 1.53005 * 111.00141 * 206.29890 * 13 12 11 16 16 C 1.47424 * 125.64872 * 180.02562 * 10 8 7 17 17 C 1.40033 * 119.83667 * 359.50885 * 5 4 3 18 18 C 1.37640 * 120.00165 * 0.25708 * 17 5 4 19 19 C 1.39061 * 120.16421 * 359.97438 * 18 17 5 20 20 O 1.35614 * 119.91891 * 180.02562 * 19 18 17 21 21 C 1.34756 * 117.00409 * 354.38120 * 20 19 18 22 22 H 1.08000 * 119.99800 * 5.05977 * 21 20 19 23 23 C 1.38706 * 120.00226 * 185.06090 * 21 20 19 24 24 N 1.31526 * 119.99950 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00159 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47257 * 90.00271 * 25 23 21 27 27 H 1.48501 * 109.47163 * 210.00071 * 25 23 21 28 28 H 1.48501 * 109.47171 * 330.00026 * 25 23 21 29 29 H 1.08993 * 109.47700 * 60.00545 * 1 2 3 30 30 H 1.09009 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47464 * 299.99785 * 1 2 3 32 32 H 1.08007 * 120.07919 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.00128 * 359.72075 * 6 5 4 34 34 H 1.07997 * 120.00039 * 0.02562 * 7 6 5 35 35 H 1.09003 * 110.03662 * 61.62968 * 11 10 8 36 36 H 1.09005 * 109.96126 * 300.31631 * 11 10 8 37 37 H 1.08993 * 110.72216 * 263.79034 * 12 11 10 38 38 H 1.09001 * 110.72148 * 140.68898 * 12 11 10 39 39 H 1.09000 * 109.47085 * 59.99955 * 15 13 12 40 40 H 1.08999 * 109.47021 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.46986 * 299.99789 * 15 13 12 42 42 H 1.08996 * 110.36930 * 37.08779 * 16 10 8 43 43 H 1.09001 * 110.45691 * 274.80668 * 16 10 8 44 44 H 1.08002 * 119.99904 * 180.23100 * 17 5 4 45 45 H 1.08007 * 119.91805 * 180.02562 * 18 17 5 46 46 H 0.97000 * 119.99928 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2941 2.3694 0.0049 5 6 1.9330 3.6148 -0.0001 6 6 1.1377 4.8506 0.0004 7 6 1.7557 6.0511 0.0013 8 6 0.9643 7.2811 0.0024 9 8 -0.2516 7.2224 0.0019 10 7 1.5811 8.4794 0.0028 11 6 3.0403 8.6937 0.0015 12 6 3.2734 10.2190 0.0281 13 6 1.9457 10.7673 0.6148 14 1 1.9450 10.7069 1.7031 15 6 1.6911 12.2020 0.1480 16 6 0.9092 9.7916 0.0043 17 6 3.3318 3.6803 0.0004 18 6 4.0750 2.5218 0.0004 19 6 3.4404 1.2845 0.0005 20 8 4.1776 0.1462 0.0010 21 6 5.5131 0.2821 -0.1161 22 1 5.9572 1.2666 -0.1226 23 6 6.3175 -0.8423 -0.2283 24 7 5.7767 -2.0412 -0.2209 25 14 8.1688 -0.6539 -0.3913 26 1 8.7870 -0.6518 0.9589 27 1 8.7137 -1.7856 -1.1834 28 1 8.4774 0.6256 -1.0791 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2155 2.3143 0.0092 33 1 0.0590 4.7986 0.0000 34 1 2.8345 6.1032 0.0013 35 1 3.4796 8.2673 -0.9004 36 1 3.4845 8.2354 0.8851 37 1 3.4370 10.6018 -0.9792 38 1 4.1136 10.4695 0.6757 39 1 1.6280 12.2243 -0.9399 40 1 0.7546 12.5620 0.5741 41 1 2.5095 12.8420 0.4777 42 1 0.0113 9.7573 0.6212 43 1 0.6585 10.0925 -1.0129 44 1 3.8275 4.6399 0.0004 45 1 5.1538 2.5739 0.0012 46 1 6.3392 -2.8275 -0.2990 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299729937.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:17 Heat of formation + Delta-G solvation = -77.548039 kcal Electronic energy + Delta-G solvation = -27098.222461 eV Core-core repulsion = 23146.569292 eV Total energy + Delta-G solvation = -3951.653169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.35670 -41.00254 -39.32423 -38.76495 -38.01477 -34.66586 -34.11207 -33.67380 -31.30052 -30.55628 -30.21671 -28.19403 -27.59450 -27.09969 -24.80842 -23.80178 -23.27851 -21.77985 -21.20448 -19.97267 -19.69752 -19.35540 -18.27194 -17.73149 -17.17774 -17.03570 -16.68975 -16.39458 -16.24309 -15.76663 -15.57932 -15.28867 -15.20211 -15.04560 -14.67879 -14.35526 -14.17880 -13.85532 -13.63193 -13.57632 -13.34516 -13.31244 -13.21431 -12.87951 -12.69213 -12.65123 -12.51873 -12.16466 -12.14272 -12.02499 -11.97275 -11.60044 -11.53706 -11.34910 -11.01437 -11.00132 -10.53634 -9.70044 -9.47664 -8.54709 -8.47374 -6.11801 -0.35092 0.53152 1.07271 1.37532 1.48058 1.55760 2.01371 2.17361 2.29219 2.54082 2.85115 3.13510 3.33595 3.41123 3.68340 3.73828 3.89561 3.94121 4.11427 4.18556 4.30419 4.31650 4.34705 4.41214 4.42433 4.50609 4.58501 4.60956 4.63534 4.70218 4.79899 4.87110 4.89270 4.95132 5.02105 5.06638 5.07929 5.17329 5.22223 5.31165 5.34402 5.44933 5.48948 5.54400 5.74517 5.90808 5.96906 6.47487 6.58197 6.95065 7.12691 7.74878 8.74363 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002420 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.113615 B =11567.671721 C =13559.996428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.133 4.133 5 C -0.134 4.134 6 C 0.015 3.985 7 C -0.237 4.237 8 C 0.560 3.440 9 O -0.598 6.598 10 N -0.620 5.620 11 C 0.089 3.911 12 C -0.121 4.121 13 C -0.099 4.099 14 H 0.084 0.916 15 C -0.137 4.137 16 C 0.102 3.898 17 C -0.064 4.064 18 C -0.217 4.217 19 C 0.103 3.897 20 O -0.211 6.211 21 C -0.415 4.415 22 H 0.111 0.889 23 C -0.023 4.023 24 N -0.914 5.914 25 Si 1.022 2.978 26 H -0.262 1.262 27 H -0.274 1.274 28 H -0.247 1.247 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.065 0.935 32 H 0.155 0.845 33 H 0.126 0.874 34 H 0.149 0.851 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.156 0.844 45 H 0.139 0.861 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 25.275 0.449 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C -0.007 4.007 4 C -0.152 4.152 5 C -0.135 4.135 6 C -0.005 4.005 7 C -0.258 4.258 8 C 0.353 3.647 9 O -0.482 6.482 10 N -0.352 5.352 11 C -0.033 4.033 12 C -0.159 4.159 13 C -0.118 4.118 14 H 0.103 0.897 15 C -0.195 4.195 16 C -0.020 4.020 17 C -0.082 4.082 18 C -0.236 4.236 19 C 0.050 3.950 20 O -0.116 6.116 21 C -0.491 4.491 22 H 0.128 0.872 23 C -0.221 4.221 24 N -0.551 5.551 25 Si 0.841 3.159 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.170 1.170 29 H 0.083 0.917 30 H 0.128 0.872 31 H 0.084 0.916 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.166 0.834 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.173 0.827 45 H 0.156 0.844 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.664 24.537 0.444 24.980 hybrid contribution 0.247 -0.624 -0.044 0.673 sum -4.416 23.913 0.401 24.321 Atomic orbital electron populations 1.23277 0.77109 1.05005 1.02060 1.86189 1.22934 1.26795 1.89871 1.18368 0.89157 0.85774 1.07379 1.21245 1.00102 0.90026 1.03834 1.18503 0.93048 0.91886 1.10083 1.22140 0.99276 0.90422 0.88628 1.22747 1.00931 0.90761 1.11348 1.18262 0.86783 0.83962 0.75668 1.90765 1.15800 1.87819 1.53787 1.48564 1.09067 1.05178 1.72412 1.22455 0.78998 0.98685 1.03137 1.22754 0.97946 0.91986 1.03195 1.22344 0.93985 0.94970 1.00538 0.89739 1.21680 1.02544 0.93664 1.01619 1.22424 0.96607 0.81924 1.01038 1.21266 0.92524 0.97896 0.96529 1.21029 1.01147 0.90700 1.10733 1.19574 0.89517 0.88159 0.97714 1.83978 1.20274 1.27787 1.79569 1.21995 0.78782 0.95948 1.52342 0.87196 1.26709 1.06253 0.93535 0.95639 1.70210 1.38556 0.98844 1.47476 0.84542 0.73016 0.79191 0.79186 1.18728 1.19907 1.17045 0.91680 0.87177 0.91619 0.82780 0.85608 0.83354 0.90133 0.90157 0.89469 0.87918 0.92064 0.92286 0.90689 0.92250 0.91322 0.82698 0.84359 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 16 2 O -0.34 -15.22 10.28 -79.02 -0.81 -16.04 16 3 C 0.04 1.68 6.70 22.57 0.15 1.83 16 4 C -0.13 -4.64 8.77 22.65 0.20 -4.44 16 5 C -0.13 -4.32 5.87 -20.14 -0.12 -4.44 16 6 C 0.02 0.43 9.45 23.82 0.23 0.65 16 7 C -0.24 -5.95 8.93 23.62 0.21 -5.74 16 8 C 0.56 15.53 7.77 86.33 0.67 16.20 16 9 O -0.60 -21.16 16.49 -4.44 -0.07 -21.23 16 10 N -0.62 -12.90 3.34 -815.82 -2.72 -15.63 16 11 C 0.09 1.16 6.08 86.64 0.53 1.69 16 12 C -0.12 -0.99 6.41 31.78 0.20 -0.79 16 13 C -0.10 -1.03 3.64 -9.40 -0.03 -1.07 16 14 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 15 C -0.14 -0.99 9.31 71.98 0.67 -0.32 16 16 C 0.10 1.79 6.38 86.85 0.55 2.34 16 17 C -0.06 -2.09 9.40 22.56 0.21 -1.88 16 18 C -0.22 -8.92 9.14 22.33 0.20 -8.72 16 19 C 0.10 5.10 6.67 22.80 0.15 5.26 16 20 O -0.21 -12.70 9.52 -6.52 -0.06 -12.76 16 21 C -0.42 -23.56 9.48 67.93 0.64 -22.91 16 22 H 0.11 5.54 5.18 -2.91 -0.02 5.52 16 23 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 24 N -0.91 -55.87 13.67 21.62 0.30 -55.57 16 25 Si 1.02 41.45 29.55 68.60 2.03 43.48 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 28 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 29 H 0.06 1.64 7.67 -2.39 -0.02 1.62 16 30 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.07 1.64 7.65 -2.39 -0.02 1.62 16 32 H 0.15 4.33 6.28 -2.91 -0.02 4.31 16 33 H 0.13 3.54 7.52 -2.91 -0.02 3.52 16 34 H 0.15 2.97 5.37 -2.91 -0.02 2.96 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 0.94 8.14 -2.38 -0.02 0.93 16 37 H 0.09 0.59 8.04 -2.39 -0.02 0.58 16 38 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.43 8.07 -2.39 -0.02 0.41 16 40 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.06 1.23 8.04 -2.39 -0.02 1.21 16 43 H 0.07 1.16 7.98 -2.39 -0.02 1.14 16 44 H 0.16 3.75 6.15 -2.91 -0.02 3.73 16 45 H 0.14 5.55 5.62 -2.91 -0.02 5.53 16 46 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -79.42 382.35 5.70 -73.72 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.00 Total: 25.48 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 6.05 Total: -21.45 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -2.43 Total: -71.20 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.95 Total: -50.03 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -79.42 5.70 -73.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299729937.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.827 kcal (2) G-P(sol) polarization free energy of solvation -79.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds