Wall clock time and date at job start Tue Mar 31 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.51334 * 2 1 4 4 C 1.53296 * 109.51367 * 239.90221 * 2 1 3 5 5 N 1.47156 * 108.38680 * 187.72389 * 4 2 1 6 6 C 1.34772 * 120.97980 * 230.51584 * 5 4 2 7 7 O 1.21721 * 119.99877 * 185.54530 * 6 5 4 8 8 C 1.46256 * 120.00445 * 5.53985 * 6 5 4 9 9 C 1.35019 * 119.99836 * 173.04925 * 8 6 5 10 10 C 1.46962 * 120.00418 * 345.40956 * 9 8 6 11 11 C 1.40020 * 120.09924 * 318.17335 * 10 9 8 12 12 C 1.37594 * 119.89791 * 179.78644 * 11 10 9 13 13 C 1.39183 * 120.09939 * 0.48786 * 12 11 10 14 14 O 1.35576 * 119.89789 * 179.76542 * 13 12 11 15 15 C 1.34779 * 116.99541 * 174.43318 * 14 13 12 16 16 H 1.08001 * 120.00606 * 5.07744 * 15 14 13 17 17 C 1.38726 * 119.99599 * 185.07827 * 15 14 13 18 18 N 1.31509 * 119.99786 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99802 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47258 * 90.00658 * 19 17 15 21 21 H 1.48502 * 109.47011 * 210.00262 * 19 17 15 22 22 H 1.48502 * 109.47485 * 330.00110 * 19 17 15 23 23 C 1.39173 * 120.20397 * 359.73896 * 13 12 11 24 24 C 1.37604 * 120.10076 * 0.02763 * 23 13 12 25 25 C 1.47148 * 118.03562 * 50.78234 * 5 4 2 26 26 H 1.09003 * 109.68180 * 68.93499 * 25 5 4 27 27 C 1.52996 * 109.68464 * 189.49506 * 25 5 4 28 28 C 1.53714 * 108.16351 * 309.16147 * 25 5 4 29 29 O 1.42955 * 109.55686 * 120.12884 * 2 1 3 30 30 H 1.09004 * 109.47289 * 180.09716 * 1 2 3 31 31 H 1.08996 * 109.47462 * 300.10104 * 1 2 3 32 32 H 1.08998 * 109.47316 * 60.10009 * 1 2 3 33 33 H 1.09004 * 109.68480 * 67.99737 * 4 2 1 34 34 H 1.09005 * 109.68211 * 307.44269 * 4 2 1 35 35 H 1.07997 * 119.99789 * 352.77253 * 8 6 5 36 36 H 1.07997 * 119.99543 * 165.41724 * 9 8 6 37 37 H 1.08000 * 120.05018 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.95447 * 180.22767 * 12 11 10 39 39 H 0.96998 * 119.99861 * 179.97438 * 18 17 15 40 40 H 1.07997 * 119.95169 * 180.02562 * 23 13 12 41 41 H 1.07998 * 120.05058 * 179.97438 * 24 23 13 42 42 H 1.09004 * 109.47095 * 50.84244 * 27 25 5 43 43 H 1.08992 * 109.47659 * 170.84433 * 27 25 5 44 44 H 1.09006 * 109.46794 * 290.84513 * 27 25 5 45 45 H 1.09000 * 109.65892 * 292.57644 * 28 25 5 46 46 H 1.08995 * 109.44680 * 172.37115 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5014 -0.8746 -1.1346 6 6 4.3187 -0.5017 -2.1392 7 8 5.5129 -0.7258 -2.0672 8 6 3.7709 0.1721 -3.3160 9 6 4.6017 0.6705 -4.2564 10 6 6.0330 0.8289 -3.9631 11 6 6.4443 1.3234 -2.7194 12 6 7.7856 1.4659 -2.4475 13 6 8.7326 1.1289 -3.4102 14 8 10.0530 1.2754 -3.1397 15 6 10.9211 0.8247 -4.0669 16 1 10.5558 0.4465 -5.0103 17 6 12.2841 0.8465 -3.8095 18 7 13.1312 0.4062 -4.7139 19 14 12.9161 1.5012 -2.1781 20 1 13.0007 0.3890 -1.1978 21 1 14.2638 2.0942 -2.3714 22 1 11.9863 2.5408 -1.6683 23 6 8.3283 0.6415 -4.6495 24 6 6.9892 0.4911 -4.9286 25 6 4.0414 -1.4492 0.1078 26 1 3.7736 -2.5039 0.1711 27 6 5.5641 -1.3014 0.1246 28 6 3.4323 -0.6843 1.2938 29 8 2.0085 -0.6762 1.1651 30 1 -0.3634 -1.0277 0.0017 31 1 -0.3634 0.5154 0.8890 32 1 -0.3634 0.5123 -0.8908 33 1 1.8022 -0.1393 -2.1378 34 1 1.5765 -1.7077 -1.3212 35 1 2.7017 0.2670 -3.4350 36 1 4.2143 0.9528 -5.2242 37 1 5.7101 1.5897 -1.9735 38 1 8.1040 1.8437 -1.4872 39 1 14.0843 0.4218 -4.5341 40 1 9.0666 0.3809 -5.3934 41 1 6.6764 0.1132 -5.8907 42 1 5.8312 -0.2670 -0.0918 43 1 5.9451 -1.5769 1.1079 44 1 6.0009 -1.9550 -0.6305 45 1 3.8032 0.3406 1.2986 46 1 3.7108 -1.1774 2.2251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299736119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:26 Heat of formation + Delta-G solvation = -31.065026 kcal Electronic energy + Delta-G solvation = -28681.896717 eV Core-core repulsion = 24732.259203 eV Total energy + Delta-G solvation = -3949.637514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.73869 -39.22795 -38.49380 -36.69377 -34.81363 -34.19947 -32.94405 -32.30500 -30.74680 -30.25439 -28.21673 -26.72258 -25.90278 -25.44117 -23.82297 -22.12902 -21.89836 -21.47884 -20.32928 -18.46866 -17.83391 -17.40123 -17.04201 -16.81476 -16.31691 -15.56464 -15.22115 -15.07689 -14.74373 -14.71703 -14.03947 -13.89761 -13.77299 -13.38806 -13.32933 -13.18195 -12.96608 -12.73046 -12.55638 -12.49958 -12.25620 -12.14281 -12.03956 -11.92553 -11.75885 -11.43924 -11.19027 -10.99687 -10.93430 -10.75156 -10.66801 -10.33232 -10.15501 -9.50469 -9.24920 -8.96954 -8.75459 -8.57279 -8.04013 -7.01592 -6.44521 -4.08332 1.11262 2.28924 2.57056 2.85281 3.21477 3.25639 3.38933 3.39672 3.50175 4.22263 4.32745 4.55158 4.57257 4.60277 4.72335 4.82721 4.85334 4.89049 5.02410 5.11143 5.14005 5.18643 5.26621 5.32829 5.42608 5.47674 5.50924 5.58677 5.63707 5.71275 5.74229 5.78119 6.12675 6.14061 6.16011 6.30255 6.38290 6.47526 6.63450 6.66405 6.84698 6.88188 7.13792 7.27257 7.34558 7.45358 7.63702 7.81605 8.03376 8.42571 8.90516 9.54375 10.62754 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.002867 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.491462 B = 9762.301044 C =10686.160500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.063 0.937 4 C 0.080 3.920 5 N -0.620 5.620 6 C 0.546 3.454 7 O -0.502 6.502 8 C -0.273 4.273 9 C 0.029 3.971 10 C -0.178 4.178 11 C 0.005 3.995 12 C -0.201 4.201 13 C 0.177 3.823 14 O -0.212 6.212 15 C -0.388 4.388 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.876 5.876 19 Si 0.905 3.095 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.259 1.259 23 C -0.236 4.236 24 C -0.042 4.042 25 C 0.114 3.886 26 H 0.074 0.926 27 C -0.138 4.138 28 C 0.052 3.948 29 O -0.380 6.380 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.280 0.720 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.045 0.955 44 H 0.085 0.915 45 H 0.056 0.944 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.834 -0.599 7.560 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.081 0.919 4 C -0.043 4.043 5 N -0.357 5.357 6 C 0.338 3.662 7 O -0.378 6.378 8 C -0.293 4.293 9 C 0.009 3.991 10 C -0.179 4.179 11 C -0.013 4.013 12 C -0.220 4.220 13 C 0.124 3.876 14 O -0.116 6.116 15 C -0.463 4.463 16 H 0.126 0.874 17 C -0.140 4.140 18 N -0.513 5.513 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.255 4.255 24 C -0.061 4.061 25 C 0.010 3.990 26 H 0.092 0.908 27 C -0.195 4.195 28 C -0.025 4.025 29 O -0.298 6.298 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.897 -0.753 7.860 25.168 hybrid contribution 0.371 0.131 0.302 0.496 sum -23.526 -0.622 8.162 24.909 Atomic orbital electron populations 1.21734 0.92332 1.03209 1.02858 1.22495 0.95390 0.95502 0.85321 0.91874 1.22481 0.80914 1.01636 0.99307 1.48197 1.06270 1.64739 1.16482 1.18437 0.86146 0.79218 0.82412 1.91017 1.14478 1.54447 1.77900 1.22725 0.99398 1.08988 0.98228 1.22359 0.92715 0.87959 0.96053 1.18350 0.91517 1.11859 0.96202 1.20446 0.93941 0.93650 0.93304 1.19992 0.91595 1.11320 0.99120 1.19268 0.83963 0.91698 0.92682 1.83505 1.12143 1.70519 1.45397 1.20832 0.86671 1.41574 0.97256 0.87446 1.24498 0.94503 0.96019 0.98981 1.69624 1.03272 1.44101 1.34326 0.86178 0.78098 0.80108 0.82529 1.19799 1.20732 1.18306 1.21082 0.96142 1.09824 0.98458 1.20813 0.92280 0.95992 0.96974 1.21979 0.96125 0.97206 0.83643 0.90846 1.22119 0.91547 1.04821 1.01056 1.23188 0.80595 1.00360 0.98362 1.87938 1.21208 1.77428 1.43265 0.91563 0.91467 0.90733 0.88469 0.90948 0.86001 0.85929 0.88057 0.86859 0.90961 0.85015 0.87307 0.91247 0.93648 0.89653 0.92529 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.57 37.16 0.36 -0.47 16 2 C 0.07 0.58 3.40 -26.58 -0.09 0.49 16 3 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.08 0.67 5.84 -3.53 -0.02 0.65 16 5 N -0.62 -7.22 3.01 -166.18 -0.50 -7.72 16 6 C 0.55 7.72 6.37 -13.04 -0.08 7.64 16 7 O -0.50 -8.90 8.22 5.17 0.04 -8.86 16 8 C -0.27 -3.27 9.18 -37.51 -0.34 -3.62 16 9 C 0.03 0.38 9.80 -37.19 -0.36 0.01 16 10 C -0.18 -3.10 4.52 -105.03 -0.47 -3.57 16 11 C 0.01 0.09 6.71 -39.15 -0.26 -0.17 16 12 C -0.20 -4.22 9.97 -39.47 -0.39 -4.61 16 13 C 0.18 4.23 6.66 -38.88 -0.26 3.97 16 14 O -0.21 -5.70 8.57 0.73 0.01 -5.69 16 15 C -0.39 -11.06 9.94 30.91 0.31 -10.75 16 16 H 0.11 3.12 5.41 -52.49 -0.28 2.84 16 17 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 18 N -0.88 -25.40 13.96 55.48 0.77 -24.62 16 19 Si 0.91 21.87 28.62 -169.99 -4.86 17.00 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 23 C -0.24 -5.25 9.14 -39.47 -0.36 -5.61 16 24 C -0.04 -0.79 9.78 -39.14 -0.38 -1.17 16 25 C 0.11 1.29 3.70 -67.21 -0.25 1.04 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 C -0.14 -1.83 7.65 37.16 0.28 -1.55 16 28 C 0.05 0.51 6.30 37.53 0.24 0.75 16 29 O -0.38 -3.86 10.38 -35.23 -0.37 -4.23 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.65 5.40 -51.93 -0.28 0.37 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.12 1.05 5.92 -52.49 -0.31 0.74 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.10 1.69 7.04 -52.49 -0.37 1.32 16 38 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 39 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.13 3.06 5.62 -52.49 -0.29 2.76 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.07 1.05 6.95 -51.93 -0.36 0.69 16 43 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 1.36 6.64 -51.93 -0.35 1.02 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 366.86 15.07 5.53 5.53 Total: -1.00 -31.98 366.86 -8.03 -40.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.45 Total: 3.85 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.20 Total: -15.26 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.27 Total: -32.34 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.32 Total: -18.78 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.98 -8.03 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299736119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.943 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds