Wall clock time and date at job start Tue Mar 31 2020 17:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.51334 * 2 1 4 4 C 1.53296 * 109.51367 * 239.90221 * 2 1 3 5 5 N 1.47156 * 108.38680 * 187.72389 * 4 2 1 6 6 C 1.34772 * 120.97980 * 230.51584 * 5 4 2 7 7 O 1.21721 * 119.99877 * 185.54530 * 6 5 4 8 8 C 1.46256 * 120.00445 * 5.53985 * 6 5 4 9 9 C 1.35019 * 119.99836 * 173.04925 * 8 6 5 10 10 C 1.46962 * 120.00418 * 345.40956 * 9 8 6 11 11 C 1.40020 * 120.09924 * 318.17335 * 10 9 8 12 12 C 1.37594 * 119.89791 * 179.78644 * 11 10 9 13 13 C 1.39183 * 120.09939 * 0.48786 * 12 11 10 14 14 O 1.35576 * 119.89789 * 179.76542 * 13 12 11 15 15 C 1.34779 * 116.99541 * 174.43318 * 14 13 12 16 16 H 1.08001 * 120.00606 * 5.07744 * 15 14 13 17 17 C 1.38726 * 119.99599 * 185.07827 * 15 14 13 18 18 N 1.31509 * 119.99786 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99802 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47258 * 90.00658 * 19 17 15 21 21 H 1.48502 * 109.47011 * 210.00262 * 19 17 15 22 22 H 1.48502 * 109.47485 * 330.00110 * 19 17 15 23 23 C 1.39173 * 120.20397 * 359.73896 * 13 12 11 24 24 C 1.37604 * 120.10076 * 0.02763 * 23 13 12 25 25 C 1.47148 * 118.03562 * 50.78234 * 5 4 2 26 26 H 1.09003 * 109.68180 * 68.93499 * 25 5 4 27 27 C 1.52996 * 109.68464 * 189.49506 * 25 5 4 28 28 C 1.53714 * 108.16351 * 309.16147 * 25 5 4 29 29 O 1.42955 * 109.55686 * 120.12884 * 2 1 3 30 30 H 1.09004 * 109.47289 * 180.09716 * 1 2 3 31 31 H 1.08996 * 109.47462 * 300.10104 * 1 2 3 32 32 H 1.08998 * 109.47316 * 60.10009 * 1 2 3 33 33 H 1.09004 * 109.68480 * 67.99737 * 4 2 1 34 34 H 1.09005 * 109.68211 * 307.44269 * 4 2 1 35 35 H 1.07997 * 119.99789 * 352.77253 * 8 6 5 36 36 H 1.07997 * 119.99543 * 165.41724 * 9 8 6 37 37 H 1.08000 * 120.05018 * 359.97438 * 11 10 9 38 38 H 1.08000 * 119.95447 * 180.22767 * 12 11 10 39 39 H 0.96998 * 119.99861 * 179.97438 * 18 17 15 40 40 H 1.07997 * 119.95169 * 180.02562 * 23 13 12 41 41 H 1.07998 * 120.05058 * 179.97438 * 24 23 13 42 42 H 1.09004 * 109.47095 * 50.84244 * 27 25 5 43 43 H 1.08992 * 109.47659 * 170.84433 * 27 25 5 44 44 H 1.09006 * 109.46794 * 290.84513 * 27 25 5 45 45 H 1.09000 * 109.65892 * 292.57644 * 28 25 5 46 46 H 1.08995 * 109.44680 * 172.37115 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2501 5 7 3.5014 -0.8746 -1.1346 6 6 4.3187 -0.5017 -2.1392 7 8 5.5129 -0.7258 -2.0672 8 6 3.7709 0.1721 -3.3160 9 6 4.6017 0.6705 -4.2564 10 6 6.0330 0.8289 -3.9631 11 6 6.4443 1.3234 -2.7194 12 6 7.7856 1.4659 -2.4475 13 6 8.7326 1.1289 -3.4102 14 8 10.0530 1.2754 -3.1397 15 6 10.9211 0.8247 -4.0669 16 1 10.5558 0.4465 -5.0103 17 6 12.2841 0.8465 -3.8095 18 7 13.1312 0.4062 -4.7139 19 14 12.9161 1.5012 -2.1781 20 1 13.0007 0.3890 -1.1978 21 1 14.2638 2.0942 -2.3714 22 1 11.9863 2.5408 -1.6683 23 6 8.3283 0.6415 -4.6495 24 6 6.9892 0.4911 -4.9286 25 6 4.0414 -1.4492 0.1078 26 1 3.7736 -2.5039 0.1711 27 6 5.5641 -1.3014 0.1246 28 6 3.4323 -0.6843 1.2938 29 8 2.0085 -0.6762 1.1651 30 1 -0.3634 -1.0277 0.0017 31 1 -0.3634 0.5154 0.8890 32 1 -0.3634 0.5123 -0.8908 33 1 1.8022 -0.1393 -2.1378 34 1 1.5765 -1.7077 -1.3212 35 1 2.7017 0.2670 -3.4350 36 1 4.2143 0.9528 -5.2242 37 1 5.7101 1.5897 -1.9735 38 1 8.1040 1.8437 -1.4872 39 1 14.0843 0.4218 -4.5341 40 1 9.0666 0.3809 -5.3934 41 1 6.6764 0.1132 -5.8907 42 1 5.8312 -0.2670 -0.0918 43 1 5.9451 -1.5769 1.1079 44 1 6.0009 -1.9550 -0.6305 45 1 3.8032 0.3406 1.2986 46 1 3.7108 -1.1774 2.2251 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299736119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:25 Heat of formation + Delta-G solvation = -51.060938 kcal Electronic energy + Delta-G solvation = -28682.763805 eV Core-core repulsion = 24732.259203 eV Total energy + Delta-G solvation = -3950.504602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72950 -40.82413 -39.60435 -38.24335 -35.82061 -35.12998 -34.52555 -33.84017 -31.88014 -31.61887 -29.67694 -27.58857 -27.31600 -26.65373 -25.01432 -23.66109 -23.02530 -22.49421 -21.50513 -19.95274 -19.43575 -18.98895 -18.19575 -17.61793 -17.24890 -16.69652 -16.50015 -16.21710 -15.92611 -15.87088 -15.67557 -15.55203 -15.31871 -14.59489 -14.52872 -14.33074 -14.22296 -14.02687 -13.91716 -13.79538 -13.48252 -13.12095 -13.05357 -12.87268 -12.76481 -12.67092 -12.52036 -12.47627 -12.18965 -12.02423 -11.95150 -11.73239 -11.34007 -11.14715 -10.98497 -10.41917 -10.10730 -9.75416 -9.35478 -8.61834 -8.53189 -6.24057 -0.08381 0.66361 1.06866 1.27767 1.33815 1.48879 1.95583 2.25451 2.41597 2.73232 2.78864 3.03285 3.21419 3.59836 3.70273 3.83451 3.94000 4.02982 4.07030 4.10529 4.12992 4.18340 4.26164 4.41428 4.51173 4.53738 4.58164 4.67203 4.73245 4.77417 4.80132 4.91024 4.92708 5.04517 5.09179 5.15432 5.17162 5.28384 5.35858 5.40261 5.43696 5.60373 5.66341 5.76275 5.81379 5.88853 6.15364 6.24206 6.48254 6.80992 7.35368 7.56554 8.58437 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019960 B = 0.002867 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.491462 B = 9762.301044 C =10686.160500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.067 3.933 3 H 0.062 0.938 4 C 0.076 3.924 5 N -0.617 5.617 6 C 0.530 3.470 7 O -0.548 6.548 8 C -0.238 4.238 9 C 0.008 3.992 10 C -0.148 4.148 11 C 0.008 3.992 12 C -0.205 4.205 13 C 0.134 3.866 14 O -0.243 6.243 15 C -0.401 4.401 16 H 0.082 0.918 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.970 3.030 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.264 1.264 23 C -0.251 4.251 24 C -0.051 4.051 25 C 0.113 3.887 26 H 0.077 0.923 27 C -0.128 4.128 28 C 0.059 3.941 29 O -0.391 6.391 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.082 0.918 35 H 0.171 0.829 36 H 0.168 0.832 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.286 0.714 40 H 0.108 0.892 41 H 0.142 0.858 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.915 -0.214 8.474 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 H 0.080 0.920 4 C -0.046 4.046 5 N -0.352 5.352 6 C 0.323 3.677 7 O -0.428 6.428 8 C -0.258 4.258 9 C -0.012 4.012 10 C -0.149 4.149 11 C -0.010 4.010 12 C -0.224 4.224 13 C 0.085 3.915 14 O -0.151 6.151 15 C -0.477 4.477 16 H 0.099 0.901 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.187 1.187 22 H -0.189 1.189 23 C -0.270 4.270 24 C -0.069 4.069 25 C 0.010 3.990 26 H 0.095 0.905 27 C -0.185 4.185 28 C -0.018 4.018 29 O -0.310 6.310 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.100 0.900 35 H 0.189 0.811 36 H 0.185 0.815 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.160 0.840 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.077 -0.369 8.784 30.377 hybrid contribution 1.356 -0.105 0.066 1.361 sum -27.721 -0.474 8.850 29.103 Atomic orbital electron populations 1.21751 0.90325 1.03622 1.03969 1.22695 0.96901 0.95098 0.84445 0.92034 1.22775 0.78481 1.02794 1.00545 1.48301 1.07733 1.63325 1.15794 1.19017 0.85907 0.79314 0.83476 1.91038 1.16544 1.56167 1.79045 1.23152 1.01678 1.05492 0.95497 1.22585 0.89791 0.90247 0.98538 1.18897 0.94154 1.07221 0.94585 1.20705 0.93025 0.92946 0.94371 1.20217 0.92417 1.11014 0.98777 1.19740 0.83515 0.94007 0.94271 1.83451 1.13181 1.73154 1.45264 1.20752 0.87625 1.42245 0.97057 0.90053 1.25285 0.94498 0.96495 1.02462 1.69702 1.03733 1.46438 1.36236 0.85238 0.77934 0.79381 0.78265 1.19277 1.18729 1.18854 1.21119 0.97636 1.10549 0.97679 1.21159 0.90857 0.95910 0.99009 1.21989 0.94698 0.97836 0.84515 0.90462 1.21911 0.93264 1.02541 1.00780 1.23123 0.80608 0.99953 0.98125 1.87945 1.20982 1.77744 1.44367 0.91480 0.91688 0.88370 0.85930 0.89992 0.81150 0.81482 0.85914 0.86522 0.90470 0.87367 0.84030 0.93389 0.92081 0.92864 0.92955 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.57 71.98 0.69 -0.30 16 2 C 0.07 0.81 3.40 30.69 0.10 0.92 16 3 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.08 0.91 5.84 86.35 0.50 1.41 16 5 N -0.62 -12.26 3.01 -797.89 -2.40 -14.67 16 6 C 0.53 13.26 6.37 86.33 0.55 13.81 16 7 O -0.55 -18.80 8.22 -4.42 -0.04 -18.83 16 8 C -0.24 -4.35 9.18 23.61 0.22 -4.13 16 9 C 0.01 0.16 9.80 23.82 0.23 0.40 16 10 C -0.15 -4.79 4.52 -20.13 -0.09 -4.89 16 11 C 0.01 0.28 6.71 22.55 0.15 0.43 16 12 C -0.21 -8.85 9.97 22.34 0.22 -8.63 16 13 C 0.13 6.79 6.66 22.72 0.15 6.94 16 14 O -0.24 -14.03 8.57 -20.31 -0.17 -14.20 16 15 C -0.40 -24.63 9.94 67.94 0.68 -23.96 16 16 H 0.08 5.23 5.41 -2.91 -0.02 5.21 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.92 -56.35 13.96 21.62 0.30 -56.05 16 19 Si 0.97 47.14 28.62 68.60 1.96 49.10 16 20 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 23 C -0.25 -11.78 9.14 22.34 0.20 -11.58 16 24 C -0.05 -1.89 9.78 22.55 0.22 -1.67 16 25 C 0.11 2.34 3.70 45.11 0.17 2.50 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 C -0.13 -3.35 7.65 71.98 0.55 -2.80 16 28 C 0.06 1.01 6.30 72.22 0.46 1.47 16 29 O -0.39 -6.74 10.38 -148.98 -1.55 -8.29 16 30 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.12 0.80 5.40 -2.39 -0.01 0.79 16 34 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 35 H 0.17 1.53 5.92 -2.91 -0.02 1.51 16 36 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.12 3.83 7.04 -2.91 -0.02 3.81 16 38 H 0.12 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.29 15.97 8.31 -92.71 -0.77 15.20 16 40 H 0.11 5.52 5.62 -2.91 -0.02 5.50 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.05 1.45 6.95 -2.38 -0.02 1.43 16 43 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.05 1.74 6.64 -2.38 -0.02 1.72 16 45 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -77.00 366.86 4.56 -72.43 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.99 Total: 19.45 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 5.47 Total: -28.94 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: -2.10 Total: -70.72 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.76 Total: -41.33 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 1.96 Total: 49.10 kcal Total: -77.00 4.56 -72.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299736119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.372 kcal (2) G-P(sol) polarization free energy of solvation -76.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds