Wall clock time and date at job start Tue Mar 31 2020 16:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47428 * 2 1 4 4 O 1.20765 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.69699 * 8.54987 * 5 3 2 7 7 C 1.53623 * 109.66291 * 129.13594 * 5 3 2 8 8 C 1.53045 * 109.23904 * 174.54922 * 7 5 3 9 9 C 1.53040 * 109.53881 * 298.51460 * 8 7 5 10 10 C 1.53195 * 109.31309 * 61.36736 * 9 8 7 11 11 N 1.46923 * 109.58650 * 248.19440 * 5 3 2 12 12 S 1.65593 * 120.63269 * 6.62465 * 11 5 3 13 13 O 1.42097 * 104.28003 * 159.28772 * 12 11 5 14 14 O 1.42097 * 104.27996 * 31.42458 * 12 11 5 15 15 C 1.81404 * 104.45102 * 275.35701 * 12 11 5 16 16 C 1.52998 * 109.47213 * 180.02562 * 15 12 11 17 17 C 1.52996 * 109.47196 * 299.99601 * 16 15 12 18 18 C 1.52999 * 109.47247 * 60.00173 * 16 15 12 19 19 C 1.50706 * 109.46751 * 179.97438 * 16 15 12 20 20 H 1.07994 * 120.00361 * 359.97438 * 19 16 15 21 21 C 1.37881 * 119.99776 * 180.02562 * 19 16 15 22 22 N 1.31515 * 119.99891 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00122 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47073 * 89.99561 * 23 21 19 25 25 H 1.48495 * 109.47034 * 210.00004 * 23 21 19 26 26 H 1.48509 * 109.46802 * 329.99729 * 23 21 19 27 27 H 1.09000 * 109.47063 * 59.99861 * 1 2 3 28 28 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46787 * 299.99798 * 1 2 3 30 30 H 1.09003 * 109.46787 * 240.00202 * 2 1 3 31 31 H 1.09003 * 109.47468 * 120.00786 * 2 1 3 32 32 H 1.09001 * 109.63446 * 54.56456 * 7 5 3 33 33 H 1.08999 * 109.45986 * 294.43852 * 7 5 3 34 34 H 1.09001 * 109.45545 * 178.49072 * 8 7 5 35 35 H 1.08996 * 109.44398 * 58.53011 * 8 7 5 36 36 H 1.08999 * 109.49631 * 301.41205 * 9 8 7 37 37 H 1.09000 * 109.51813 * 181.33368 * 9 8 7 38 38 H 1.08995 * 109.58516 * 185.57707 * 10 9 8 39 39 H 1.08998 * 109.70461 * 65.21777 * 10 9 8 40 40 H 1.09000 * 109.47045 * 59.99600 * 15 12 11 41 41 H 1.09006 * 109.46781 * 300.00354 * 15 12 11 42 42 H 1.09006 * 109.47087 * 60.00237 * 17 16 15 43 43 H 1.08992 * 109.47566 * 180.02562 * 17 16 15 44 44 H 1.09000 * 109.46985 * 300.00521 * 17 16 15 45 45 H 1.08996 * 109.47126 * 60.00041 * 18 16 15 46 46 H 1.09002 * 109.46956 * 180.02562 * 18 16 15 47 47 H 1.08997 * 109.46894 * 299.99793 * 18 16 15 48 48 H 0.96996 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3387 0.0005 5 6 3.5140 1.6961 0.0006 6 1 4.0608 0.7655 -0.1516 7 6 3.8559 2.6881 -1.1215 8 6 5.3360 3.0657 -1.0272 9 6 5.6059 3.7470 0.3163 10 6 5.2823 2.7720 1.4528 11 7 3.9038 2.2919 1.2858 12 16 2.8121 2.4136 2.5250 13 8 3.6163 2.5515 3.6883 14 8 1.9595 1.2899 2.3526 15 6 1.9130 3.9524 2.1867 16 6 0.8629 4.1796 3.2759 17 6 -0.1200 3.0072 3.2892 18 6 1.5538 4.2813 4.6372 19 6 0.1165 5.4583 2.9952 20 1 0.3664 6.0500 2.1270 21 6 -0.8849 5.8734 3.8473 22 7 -1.1889 5.1531 4.9049 23 14 -1.8106 7.4580 3.4990 24 1 -2.9942 7.1639 2.6518 25 1 -2.2565 8.0626 4.7799 26 1 -0.9167 8.4074 2.7882 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.2444 3.5844 -1.0168 33 1 3.6594 2.2246 -2.0883 34 1 5.5888 3.7489 -1.8381 35 1 5.9458 2.1659 -1.1071 36 1 4.9779 4.6333 0.4074 37 1 6.6550 4.0370 0.3734 38 1 5.3778 3.2830 2.4108 39 1 5.9701 1.9271 1.4192 40 1 1.4212 3.8801 1.2167 41 1 2.6132 4.7878 2.1776 42 1 0.4202 2.0824 3.4925 43 1 -0.8684 3.1691 4.0648 44 1 -0.6122 2.9347 2.3193 45 1 2.2539 5.1166 4.6278 46 1 0.8055 4.4427 5.4133 47 1 2.0940 3.3567 4.8405 48 1 -1.8935 5.4449 5.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331325542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:50 Heat of formation + Delta-G solvation = -110.796547 kcal Electronic energy + Delta-G solvation = -29993.261846 eV Core-core repulsion = 26175.610865 eV Total energy + Delta-G solvation = -3817.650981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19578 -37.86693 -36.49979 -36.17533 -35.36881 -32.71905 -32.46249 -31.57276 -31.40899 -26.64484 -25.95477 -25.63932 -25.16160 -24.16778 -22.98856 -20.60633 -19.83868 -19.23998 -18.33678 -17.50897 -16.34364 -15.96003 -15.86871 -15.36683 -14.98693 -14.89068 -14.73558 -14.51322 -14.22976 -13.97033 -13.56027 -13.13399 -13.05710 -12.96473 -12.47220 -12.43285 -12.11543 -11.99707 -11.89147 -11.57815 -11.46435 -11.39472 -11.23710 -11.09135 -11.03576 -11.00239 -10.88626 -10.77897 -10.64987 -10.53617 -10.31765 -10.21698 -10.02277 -9.57537 -9.54410 -9.27006 -8.94836 -8.57080 -8.33647 -5.96919 -4.07607 0.80467 1.97199 3.06418 3.30201 3.36690 3.39446 3.84638 4.30396 4.42817 4.51908 4.57758 4.73373 4.90621 4.92178 5.14388 5.16035 5.18446 5.28287 5.35966 5.46648 5.50381 5.53993 5.62091 5.71452 5.81753 5.87175 5.88986 5.94322 5.99413 6.06774 6.13077 6.19757 6.32687 6.52433 6.58217 6.63436 6.80616 6.87976 6.97084 7.10011 7.39032 7.58109 7.66617 7.74762 8.05164 8.16974 8.40990 8.90546 9.56825 11.04544 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.005137 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.993508 B = 5449.539127 C = 5913.962710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.152 4.152 3 C 0.349 3.651 4 O -0.434 6.434 5 C 0.111 3.889 6 H 0.094 0.906 7 C -0.128 4.128 8 C -0.113 4.113 9 C -0.139 4.139 10 C 0.120 3.880 11 N -0.998 5.998 12 S 2.580 3.420 13 O -0.963 6.963 14 O -0.956 6.956 15 C -0.579 4.579 16 C 0.085 3.915 17 C -0.158 4.158 18 C -0.164 4.164 19 C -0.495 4.495 20 H 0.058 0.942 21 C 0.064 3.936 22 N -0.886 5.886 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.111 0.889 42 H 0.024 0.976 43 H 0.092 0.908 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.095 0.905 47 H 0.024 0.976 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.363 -8.385 -12.156 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.189 4.189 3 C 0.223 3.777 4 O -0.307 6.307 5 C 0.003 3.997 6 H 0.112 0.888 7 C -0.167 4.167 8 C -0.150 4.150 9 C -0.178 4.178 10 C -0.004 4.004 11 N -0.836 5.836 12 S 2.682 3.318 13 O -0.953 6.953 14 O -0.947 6.947 15 C -0.713 4.713 16 C 0.083 3.917 17 C -0.216 4.216 18 C -0.221 4.221 19 C -0.535 4.535 20 H 0.076 0.924 21 C -0.138 4.138 22 N -0.524 5.524 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.160 0.840 41 H 0.129 0.871 42 H 0.043 0.957 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.113 0.887 47 H 0.043 0.957 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.771 -8.568 -11.280 18.417 hybrid contribution -0.408 1.386 -0.583 1.558 sum 11.362 -7.183 -11.862 17.928 Atomic orbital electron populations 1.21559 0.93598 1.01282 1.03448 1.21856 0.98707 0.94589 1.03771 1.24729 0.89532 0.92737 0.70670 1.90415 1.58413 1.47095 1.34747 1.21577 0.95037 0.97774 0.85284 0.88801 1.21977 0.97745 0.99899 0.97058 1.21433 0.95536 1.00649 0.97418 1.21968 1.01969 0.99001 0.94884 1.21421 0.81704 0.97640 0.99682 1.58070 1.23241 1.75570 1.26680 1.06139 0.73930 0.78814 0.72930 1.93519 1.68059 1.88123 1.45629 1.93500 1.67198 1.49735 1.84224 1.30699 1.11968 1.16405 1.12248 1.17891 0.89373 0.96646 0.87800 1.22212 1.01849 0.94799 1.02704 1.22290 1.00196 0.98262 1.01391 1.20940 1.17406 1.05510 1.09636 0.92389 1.24928 0.96779 0.97077 0.94991 1.69805 1.30879 1.37982 1.13744 0.86553 0.80128 0.83458 0.77611 1.20647 1.21176 1.19993 0.92855 0.92705 0.90775 0.89882 0.87122 0.90074 0.90735 0.91444 0.91727 0.91046 0.90650 0.88601 0.91248 0.83990 0.87095 0.95745 0.88984 0.94159 0.94629 0.88656 0.95681 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 37.16 0.34 -1.62 16 2 C -0.15 -1.92 5.66 -27.88 -0.16 -2.08 16 3 C 0.35 5.13 3.39 -29.04 -0.10 5.03 16 4 O -0.43 -7.76 12.44 -12.07 -0.15 -7.91 16 5 C 0.11 1.36 3.25 -68.53 -0.22 1.13 16 6 H 0.09 0.89 8.02 -51.93 -0.42 0.47 16 7 C -0.13 -1.32 5.29 -26.38 -0.14 -1.46 16 8 C -0.11 -0.96 5.88 -26.69 -0.16 -1.12 16 9 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 10 C 0.12 1.44 6.34 -3.71 -0.02 1.41 16 11 N -1.00 -14.49 3.21 -107.46 -0.35 -14.83 16 12 S 2.58 49.98 3.83 -107.50 -0.41 49.57 16 13 O -0.96 -20.74 14.16 -57.54 -0.81 -21.55 16 14 O -0.96 -19.28 10.83 -65.07 -0.71 -19.99 16 15 C -0.58 -12.39 4.83 37.16 0.18 -12.21 16 16 C 0.09 2.17 0.52 -155.66 -0.08 2.09 16 17 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 18 C -0.16 -4.19 7.77 37.16 0.29 -3.90 16 19 C -0.50 -13.62 8.01 -34.44 -0.28 -13.89 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 22 N -0.89 -24.86 9.35 55.43 0.52 -24.34 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.46 7.21 -51.93 -0.37 1.09 16 32 H 0.08 0.99 7.84 -51.93 -0.41 0.58 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 1.24 6.93 -51.93 -0.36 0.88 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.14 3.03 5.26 -51.92 -0.27 2.76 16 41 H 0.11 2.20 8.14 -51.92 -0.42 1.78 16 42 H 0.02 0.58 5.47 -51.93 -0.28 0.30 16 43 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.61 6.07 -51.93 -0.32 2.30 16 47 H 0.02 0.61 5.46 -51.93 -0.28 0.32 16 48 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -32.08 363.99 -9.82 -41.90 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.06 Total: 5.57 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: -0.31 Total: -30.23 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.17 Total: -39.18 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -1.67 Total: -49.45 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 49.98 SS G_CDS: -0.41 Total: 49.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.08 -9.82 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331325542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.900 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds