Wall clock time and date at job start Tue Mar 31 2020 16:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50696 * 109.47428 * 2 1 4 4 O 1.20765 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00435 * 179.97438 * 3 2 1 6 6 H 1.09006 * 109.69699 * 8.54987 * 5 3 2 7 7 C 1.53623 * 109.66291 * 129.13594 * 5 3 2 8 8 C 1.53045 * 109.23904 * 174.54922 * 7 5 3 9 9 C 1.53040 * 109.53881 * 298.51460 * 8 7 5 10 10 C 1.53195 * 109.31309 * 61.36736 * 9 8 7 11 11 N 1.46923 * 109.58650 * 248.19440 * 5 3 2 12 12 S 1.65593 * 120.63269 * 6.62465 * 11 5 3 13 13 O 1.42097 * 104.28003 * 159.28772 * 12 11 5 14 14 O 1.42097 * 104.27996 * 31.42458 * 12 11 5 15 15 C 1.81404 * 104.45102 * 275.35701 * 12 11 5 16 16 C 1.52998 * 109.47213 * 180.02562 * 15 12 11 17 17 C 1.52996 * 109.47196 * 299.99601 * 16 15 12 18 18 C 1.52999 * 109.47247 * 60.00173 * 16 15 12 19 19 C 1.50706 * 109.46751 * 179.97438 * 16 15 12 20 20 H 1.07994 * 120.00361 * 359.97438 * 19 16 15 21 21 C 1.37881 * 119.99776 * 180.02562 * 19 16 15 22 22 N 1.31515 * 119.99891 * 359.97438 * 21 19 16 23 23 Si 1.86799 * 120.00122 * 180.02562 * 21 19 16 24 24 H 1.48496 * 109.47073 * 89.99561 * 23 21 19 25 25 H 1.48495 * 109.47034 * 210.00004 * 23 21 19 26 26 H 1.48509 * 109.46802 * 329.99729 * 23 21 19 27 27 H 1.09000 * 109.47063 * 59.99861 * 1 2 3 28 28 H 1.09000 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46787 * 299.99798 * 1 2 3 30 30 H 1.09003 * 109.46787 * 240.00202 * 2 1 3 31 31 H 1.09003 * 109.47468 * 120.00786 * 2 1 3 32 32 H 1.09001 * 109.63446 * 54.56456 * 7 5 3 33 33 H 1.08999 * 109.45986 * 294.43852 * 7 5 3 34 34 H 1.09001 * 109.45545 * 178.49072 * 8 7 5 35 35 H 1.08996 * 109.44398 * 58.53011 * 8 7 5 36 36 H 1.08999 * 109.49631 * 301.41205 * 9 8 7 37 37 H 1.09000 * 109.51813 * 181.33368 * 9 8 7 38 38 H 1.08995 * 109.58516 * 185.57707 * 10 9 8 39 39 H 1.08998 * 109.70461 * 65.21777 * 10 9 8 40 40 H 1.09000 * 109.47045 * 59.99600 * 15 12 11 41 41 H 1.09006 * 109.46781 * 300.00354 * 15 12 11 42 42 H 1.09006 * 109.47087 * 60.00237 * 17 16 15 43 43 H 1.08992 * 109.47566 * 180.02562 * 17 16 15 44 44 H 1.09000 * 109.46985 * 300.00521 * 17 16 15 45 45 H 1.08996 * 109.47126 * 60.00041 * 18 16 15 46 46 H 1.09002 * 109.46956 * 180.02562 * 18 16 15 47 47 H 1.08997 * 109.46894 * 299.99793 * 18 16 15 48 48 H 0.96996 * 120.00001 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3387 0.0005 5 6 3.5140 1.6961 0.0006 6 1 4.0608 0.7655 -0.1516 7 6 3.8559 2.6881 -1.1215 8 6 5.3360 3.0657 -1.0272 9 6 5.6059 3.7470 0.3163 10 6 5.2823 2.7720 1.4528 11 7 3.9038 2.2919 1.2858 12 16 2.8121 2.4136 2.5250 13 8 3.6163 2.5515 3.6883 14 8 1.9595 1.2899 2.3526 15 6 1.9130 3.9524 2.1867 16 6 0.8629 4.1796 3.2759 17 6 -0.1200 3.0072 3.2892 18 6 1.5538 4.2813 4.6372 19 6 0.1165 5.4583 2.9952 20 1 0.3664 6.0500 2.1270 21 6 -0.8849 5.8734 3.8473 22 7 -1.1889 5.1531 4.9049 23 14 -1.8106 7.4580 3.4990 24 1 -2.9942 7.1639 2.6518 25 1 -2.2565 8.0626 4.7799 26 1 -0.9167 8.4074 2.7882 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 3.2444 3.5844 -1.0168 33 1 3.6594 2.2246 -2.0883 34 1 5.5888 3.7489 -1.8381 35 1 5.9458 2.1659 -1.1071 36 1 4.9779 4.6333 0.4074 37 1 6.6550 4.0370 0.3734 38 1 5.3778 3.2830 2.4108 39 1 5.9701 1.9271 1.4192 40 1 1.4212 3.8801 1.2167 41 1 2.6132 4.7878 2.1776 42 1 0.4202 2.0824 3.4925 43 1 -0.8684 3.1691 4.0648 44 1 -0.6122 2.9347 2.3193 45 1 2.2539 5.1166 4.6278 46 1 0.8055 4.4427 5.4133 47 1 2.0940 3.3567 4.8405 48 1 -1.8935 5.4449 5.5041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331325542.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:49 Heat of formation + Delta-G solvation = -130.122162 kcal Electronic energy + Delta-G solvation = -29994.099867 eV Core-core repulsion = 26175.610865 eV Total energy + Delta-G solvation = -3818.489003 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.30057 -38.92786 -38.18821 -37.96987 -37.00862 -33.81721 -33.62053 -33.40610 -32.31513 -28.40513 -27.75113 -27.29735 -27.00499 -25.09001 -23.93969 -21.75469 -21.08979 -20.79830 -19.70874 -18.88019 -17.94423 -17.60434 -17.05827 -16.93013 -16.63166 -16.22235 -16.01396 -15.66092 -15.27923 -14.95577 -14.89167 -14.60377 -14.55656 -14.42967 -14.10989 -13.95680 -13.60059 -13.40811 -13.05474 -13.02250 -12.93283 -12.88369 -12.80308 -12.58047 -12.48323 -12.34319 -12.25480 -12.19425 -12.09093 -11.97923 -11.83018 -11.72403 -11.56934 -11.51219 -11.30529 -10.67257 -10.45812 -10.39707 -9.96891 -8.06933 -6.25149 -0.71831 0.84812 1.38946 1.39767 1.49435 1.75049 2.40288 2.77145 2.81727 3.11101 3.15802 3.65400 3.86243 4.00803 4.05414 4.11876 4.18172 4.20065 4.33749 4.35266 4.42762 4.45282 4.56530 4.71178 4.72761 4.80082 4.84893 4.90197 4.91817 4.96009 4.97074 5.04556 5.06905 5.18317 5.22807 5.24963 5.30383 5.33691 5.45046 5.47643 5.49902 5.59347 5.59514 5.92996 6.06538 6.31487 6.55572 6.77704 7.42092 8.93161 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.005137 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.993508 B = 5449.539127 C = 5913.962710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 C 0.340 3.660 4 O -0.476 6.476 5 C 0.105 3.895 6 H 0.137 0.863 7 C -0.128 4.128 8 C -0.108 4.108 9 C -0.139 4.139 10 C 0.109 3.891 11 N -0.991 5.991 12 S 2.602 3.398 13 O -0.986 6.986 14 O -0.967 6.967 15 C -0.591 4.591 16 C 0.074 3.926 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.518 4.518 20 H 0.053 0.947 21 C 0.018 3.982 22 N -0.907 5.907 23 Si 0.954 3.046 24 H -0.278 1.278 25 H -0.280 1.280 26 H -0.269 1.269 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.030 0.970 30 H 0.132 0.868 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.030 0.970 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.696 -9.389 -14.406 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.192 4.192 3 C 0.216 3.784 4 O -0.351 6.351 5 C -0.001 4.001 6 H 0.154 0.846 7 C -0.167 4.167 8 C -0.145 4.145 9 C -0.178 4.178 10 C -0.014 4.014 11 N -0.831 5.831 12 S 2.701 3.299 13 O -0.976 6.976 14 O -0.957 6.957 15 C -0.723 4.723 16 C 0.072 3.928 17 C -0.203 4.203 18 C -0.215 4.215 19 C -0.557 4.557 20 H 0.071 0.929 21 C -0.181 4.181 22 N -0.546 5.546 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.205 1.205 26 H -0.194 1.194 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.150 0.850 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.051 0.949 43 H 0.088 0.912 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.049 0.951 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.098 -9.554 -13.526 21.748 hybrid contribution -1.086 1.625 0.055 1.956 sum 13.012 -7.929 -13.471 20.338 Atomic orbital electron populations 1.21550 0.95059 1.02136 1.01284 1.21978 0.97533 0.93835 1.05834 1.25425 0.90705 0.93185 0.69051 1.90408 1.59720 1.48361 1.36598 1.21961 0.93736 0.99998 0.84410 0.84577 1.22030 0.98785 0.98484 0.97418 1.21456 0.94244 1.01944 0.96872 1.22007 1.03190 0.97791 0.94835 1.21774 0.80337 0.99328 0.99996 1.57713 1.23227 1.75548 1.26642 1.05152 0.73858 0.77479 0.73392 1.93482 1.68384 1.88091 1.47689 1.93484 1.68253 1.49213 1.84794 1.30689 1.11686 1.19372 1.10537 1.17858 0.90322 0.95682 0.88922 1.22053 1.01475 0.95602 1.01177 1.22192 0.99584 0.98600 1.01104 1.21241 1.18220 1.06585 1.09646 0.92890 1.25668 0.97549 1.00028 0.94835 1.69931 1.31149 1.39220 1.14276 0.85625 0.78854 0.79979 0.77617 1.20377 1.20535 1.19369 0.92880 0.90308 0.95084 0.85021 0.87381 0.92824 0.88169 0.89975 0.89211 0.92969 0.87976 0.90228 0.88101 0.84331 0.86486 0.94949 0.91249 0.95084 0.94408 0.90803 0.95084 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 9.20 71.98 0.66 -3.24 16 2 C -0.15 -3.58 5.66 29.85 0.17 -3.41 16 3 C 0.34 9.50 3.39 29.10 0.10 9.60 16 4 O -0.48 -17.27 12.44 15.81 0.20 -17.08 16 5 C 0.11 2.26 3.25 44.37 0.14 2.40 16 6 H 0.14 1.85 8.02 -2.38 -0.02 1.83 16 7 C -0.13 -2.26 5.29 30.82 0.16 -2.10 16 8 C -0.11 -1.37 5.88 30.62 0.18 -1.19 16 9 C -0.14 -2.27 6.08 30.67 0.19 -2.09 16 10 C 0.11 2.32 6.34 86.36 0.55 2.86 16 11 N -0.99 -26.90 3.21 -493.89 -1.59 -28.49 16 12 S 2.60 100.82 3.83 -56.49 -0.22 100.61 16 13 O -0.99 -42.50 14.16 -127.65 -1.81 -44.31 16 14 O -0.97 -39.15 10.83 -120.45 -1.31 -40.46 16 15 C -0.59 -26.10 4.83 71.98 0.35 -25.75 16 16 C 0.07 3.91 0.52 -52.93 -0.03 3.88 16 17 C -0.15 -7.80 7.78 71.98 0.56 -7.24 16 18 C -0.16 -8.32 7.77 71.98 0.56 -7.76 16 19 C -0.52 -29.38 8.01 25.60 0.21 -29.18 16 20 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 21 C 0.02 1.04 5.15 84.66 0.44 1.47 16 22 N -0.91 -52.48 9.35 21.45 0.20 -52.28 16 23 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 1.09 8.10 -2.39 -0.02 1.07 16 30 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.11 2.62 7.21 -2.39 -0.02 2.61 16 32 H 0.05 1.25 7.84 -2.39 -0.02 1.24 16 33 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.96 6.93 -2.39 -0.02 1.94 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.14 6.20 5.26 -2.39 -0.01 6.19 16 41 H 0.12 4.83 8.14 -2.39 -0.02 4.81 16 42 H 0.03 1.63 5.47 -2.38 -0.01 1.61 16 43 H 0.07 4.00 6.07 -2.39 -0.01 3.99 16 44 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 4.20 6.07 -2.39 -0.01 4.19 16 47 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 48 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.99 363.99 2.68 -70.31 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.94 Total: 26.86 kcal Atomic # 6 Polarization: -65.96 SS G_CDS: 4.23 Total: -61.73 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.39 Total: -80.76 kcal Atomic # 8 Polarization: -98.93 SS G_CDS: -2.92 Total: -101.84 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 100.82 SS G_CDS: -0.22 Total: 100.61 kcal Total: -72.99 2.68 -70.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331325542.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.810 kcal (2) G-P(sol) polarization free energy of solvation -72.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds