Wall clock time and date at job start Tue Mar 31 2020 16:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47450 * 2 1 4 4 O 1.20757 * 119.99875 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00095 * 180.27529 * 3 2 1 6 6 H 1.08995 * 109.58173 * 348.09437 * 5 3 2 7 7 C 1.53191 * 109.58655 * 227.81656 * 5 3 2 8 8 C 1.53039 * 109.31628 * 185.57594 * 7 5 3 9 9 C 1.53048 * 109.53419 * 61.36026 * 8 7 5 10 10 C 1.53193 * 109.31600 * 298.64015 * 9 8 7 11 11 N 1.46919 * 109.58712 * 108.52625 * 5 3 2 12 12 S 1.65596 * 120.63163 * 353.39352 * 11 5 3 13 13 O 1.42097 * 104.28283 * 200.64264 * 12 11 5 14 14 O 1.42105 * 104.27883 * 328.50521 * 12 11 5 15 15 C 1.81402 * 104.44925 * 84.57129 * 12 11 5 16 16 C 1.53000 * 109.47197 * 180.02562 * 15 12 11 17 17 C 1.53002 * 109.47163 * 299.99997 * 16 15 12 18 18 C 1.52997 * 109.47382 * 60.00020 * 16 15 12 19 19 C 1.50703 * 109.46959 * 180.02562 * 16 15 12 20 20 H 1.07996 * 120.00025 * 358.41543 * 19 16 15 21 21 C 1.37877 * 119.99772 * 178.41700 * 19 16 15 22 22 N 1.31520 * 120.00239 * 3.64289 * 21 19 16 23 23 Si 1.86799 * 119.99822 * 183.65070 * 21 19 16 24 24 H 1.48498 * 109.47241 * 94.97403 * 23 21 19 25 25 H 1.48500 * 109.47045 * 214.97139 * 23 21 19 26 26 H 1.48496 * 109.47151 * 334.96958 * 23 21 19 27 27 H 1.09002 * 109.47084 * 299.99689 * 1 2 3 28 28 H 1.08999 * 109.47112 * 59.99910 * 1 2 3 29 29 H 1.09005 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47344 * 239.99831 * 2 1 3 31 31 H 1.09006 * 109.47297 * 120.00728 * 2 1 3 32 32 H 1.09000 * 109.49733 * 305.53078 * 7 5 3 33 33 H 1.08998 * 109.49999 * 65.62159 * 7 5 3 34 34 H 1.08998 * 109.46495 * 181.38165 * 8 7 5 35 35 H 1.08999 * 109.46029 * 301.35962 * 8 7 5 36 36 H 1.09001 * 109.49342 * 58.58988 * 9 8 7 37 37 H 1.08998 * 109.49567 * 178.64873 * 9 8 7 38 38 H 1.08998 * 109.58563 * 174.42444 * 10 9 8 39 39 H 1.09004 * 109.58081 * 294.70679 * 10 9 8 40 40 H 1.09008 * 109.47099 * 300.00140 * 15 12 11 41 41 H 1.09003 * 109.47080 * 60.00082 * 15 12 11 42 42 H 1.08999 * 109.46842 * 66.88259 * 17 16 15 43 43 H 1.08997 * 109.47158 * 186.88361 * 17 16 15 44 44 H 1.08997 * 109.47019 * 306.88384 * 17 16 15 45 45 H 1.09008 * 109.47064 * 59.99963 * 18 16 15 46 46 H 1.08998 * 109.47538 * 179.97438 * 18 16 15 47 47 H 1.09002 * 109.47166 * 300.00290 * 18 16 15 48 48 H 0.97001 * 119.99856 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 8 1.2477 2.3386 0.0005 5 6 3.5141 1.6961 -0.0063 6 1 4.0577 0.7745 0.2016 7 6 3.8467 2.7410 1.0634 8 6 5.3262 3.1186 0.9594 9 6 5.6028 3.7301 -0.4161 10 6 5.2900 2.6964 -1.5025 11 7 3.9120 2.2205 -1.3197 12 16 2.8281 2.2743 -2.5704 13 8 3.6394 2.3500 -3.7345 14 8 1.9750 1.1608 -2.3431 15 6 1.9261 3.8284 -2.3212 16 6 0.8818 3.9949 -3.4269 17 6 1.5802 4.0233 -4.7879 18 6 -0.1002 2.8225 -3.3819 19 6 0.1329 5.2863 -3.2201 20 1 0.3598 5.9118 -2.3695 21 6 -0.8419 5.6691 -4.1170 22 7 -1.1683 4.8741 -5.1126 23 14 -1.6987 7.3170 -3.9181 24 1 -1.0210 8.3325 -4.7634 25 1 -3.1176 7.1909 -4.3377 26 1 -1.6389 7.7375 -2.4952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8900 32 1 3.2330 3.6284 0.9084 33 1 3.6455 2.3271 2.0514 34 1 5.5714 3.8438 1.7352 35 1 5.9387 2.2264 1.0897 36 1 4.9726 4.6082 -0.5571 37 1 6.6513 4.0208 -0.4807 38 1 5.3902 3.1573 -2.4851 39 1 5.9822 1.8584 -1.4195 40 1 1.4281 3.8080 -1.3517 41 1 2.6257 4.6636 -2.3528 42 1 2.0196 3.0467 -4.9912 43 1 0.8537 4.2636 -5.5642 44 1 2.3648 4.7798 -4.7780 45 1 -0.5978 2.8023 -2.4123 46 1 -0.8444 2.9414 -4.1694 47 1 0.4418 1.8887 -3.5317 48 1 -1.8543 5.1433 -5.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331325543.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:54 Heat of formation + Delta-G solvation = -111.322945 kcal Electronic energy + Delta-G solvation = -30000.114778 eV Core-core repulsion = 26182.440971 eV Total energy + Delta-G solvation = -3817.673807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20457 -37.87033 -36.51091 -36.18965 -35.38154 -32.71805 -32.43554 -31.58848 -31.42848 -26.65094 -25.95081 -25.65347 -25.17259 -24.18683 -22.96808 -20.60454 -19.83276 -19.24144 -18.34479 -17.51125 -16.33761 -15.97481 -15.87169 -15.38138 -14.97070 -14.91813 -14.74055 -14.51407 -14.22772 -13.95976 -13.55471 -13.11838 -13.06734 -12.97789 -12.48882 -12.44982 -12.09804 -11.98147 -11.86298 -11.56852 -11.46881 -11.37919 -11.23796 -11.11903 -11.04782 -11.01127 -10.89778 -10.74295 -10.66172 -10.53740 -10.31636 -10.25278 -10.02054 -9.58228 -9.55375 -9.28371 -8.96046 -8.59473 -8.33537 -5.98024 -4.08872 0.79086 1.96135 3.06683 3.29134 3.36327 3.39648 3.84964 4.29506 4.42171 4.51172 4.58202 4.73179 4.90695 4.92015 5.15242 5.17712 5.19051 5.26836 5.37972 5.49279 5.50766 5.54389 5.62448 5.70959 5.81382 5.87492 5.88354 5.95527 5.99943 6.08613 6.12765 6.20076 6.36863 6.51268 6.58279 6.64769 6.77316 6.86528 6.96336 7.08711 7.37870 7.55771 7.64753 7.73658 8.04536 8.16106 8.40517 8.89503 9.55636 11.03147 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.005140 C = 0.004732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.771500 B = 5445.994534 C = 5916.057851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.152 4.152 3 C 0.348 3.652 4 O -0.434 6.434 5 C 0.111 3.889 6 H 0.094 0.906 7 C -0.129 4.129 8 C -0.113 4.113 9 C -0.140 4.140 10 C 0.121 3.879 11 N -0.998 5.998 12 S 2.579 3.421 13 O -0.962 6.962 14 O -0.955 6.955 15 C -0.579 4.579 16 C 0.085 3.915 17 C -0.161 4.161 18 C -0.158 4.158 19 C -0.495 4.495 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.894 3.106 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.140 0.860 41 H 0.111 0.889 42 H 0.022 0.978 43 H 0.096 0.904 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.093 0.907 47 H 0.024 0.976 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.305 -7.649 12.406 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.189 4.189 3 C 0.222 3.778 4 O -0.306 6.306 5 C 0.004 3.996 6 H 0.112 0.888 7 C -0.168 4.168 8 C -0.150 4.150 9 C -0.178 4.178 10 C -0.004 4.004 11 N -0.835 5.835 12 S 2.681 3.319 13 O -0.953 6.953 14 O -0.946 6.946 15 C -0.714 4.714 16 C 0.083 3.917 17 C -0.219 4.219 18 C -0.216 4.216 19 C -0.535 4.535 20 H 0.077 0.923 21 C -0.138 4.138 22 N -0.523 5.523 23 Si 0.722 3.278 24 H -0.207 1.207 25 H -0.211 1.211 26 H -0.199 1.199 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.158 0.842 41 H 0.130 0.870 42 H 0.041 0.959 43 H 0.115 0.885 44 H 0.052 0.948 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.042 0.958 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.712 -7.881 11.573 18.254 hybrid contribution -0.358 1.445 0.470 1.562 sum 11.355 -6.435 12.043 17.759 Atomic orbital electron populations 1.21552 0.93650 1.01276 1.03348 1.21882 0.98673 0.94562 1.03825 1.24765 0.89541 0.92750 0.70758 1.90418 1.58376 1.47208 1.34624 1.21482 0.94994 0.98344 0.84817 0.88823 1.21905 0.97758 0.99559 0.97548 1.21433 0.95545 1.00858 0.97195 1.21973 1.01985 0.98912 0.94979 1.21416 0.81736 0.97330 0.99964 1.58066 1.23318 1.78000 1.24101 1.06168 0.73997 0.78950 0.72811 1.93525 1.67677 1.88293 1.45772 1.93512 1.67249 1.50189 1.83602 1.30693 1.12023 1.16745 1.11905 1.17899 0.89428 0.96904 0.87507 1.22238 1.00045 0.98004 1.01613 1.22234 1.01850 0.94699 1.02819 1.20956 1.18749 1.04061 1.09700 0.92345 1.24930 0.96492 0.97110 0.95279 1.69812 1.31440 1.35729 1.15365 0.86540 0.78841 0.84046 0.78356 1.20724 1.21146 1.19912 0.92944 0.90799 0.92717 0.86785 0.90020 0.90057 0.90726 0.91452 0.91734 0.91060 0.90647 0.88605 0.91226 0.84204 0.87030 0.95872 0.88519 0.94814 0.94190 0.88856 0.95754 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.20 37.16 0.34 -1.63 16 2 C -0.15 -1.95 5.59 -27.88 -0.16 -2.11 16 3 C 0.35 5.13 3.41 -29.04 -0.10 5.03 16 4 O -0.43 -7.75 12.69 -10.12 -0.13 -7.88 16 5 C 0.11 1.36 3.24 -68.75 -0.22 1.14 16 6 H 0.09 0.89 8.03 -51.93 -0.42 0.48 16 7 C -0.13 -1.35 5.25 -26.61 -0.14 -1.49 16 8 C -0.11 -0.97 5.88 -26.69 -0.16 -1.12 16 9 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 10 C 0.12 1.43 6.34 -3.71 -0.02 1.41 16 11 N -1.00 -14.43 3.22 -107.70 -0.35 -14.77 16 12 S 2.58 49.66 3.84 -107.50 -0.41 49.25 16 13 O -0.96 -20.62 14.32 -57.54 -0.82 -21.44 16 14 O -0.96 -19.08 10.56 -64.49 -0.68 -19.76 16 15 C -0.58 -12.35 4.87 37.16 0.18 -12.17 16 16 C 0.09 2.15 0.52 -155.66 -0.08 2.07 16 17 C -0.16 -4.11 7.58 37.16 0.28 -3.83 16 18 C -0.16 -4.04 7.79 37.16 0.29 -3.75 16 19 C -0.50 -13.57 8.01 -34.44 -0.28 -13.84 16 20 H 0.06 1.58 7.75 -52.49 -0.41 1.18 16 21 C 0.06 1.73 5.11 -17.82 -0.09 1.64 16 22 N -0.88 -24.76 9.35 55.43 0.52 -24.24 16 23 Si 0.89 21.29 29.54 -169.99 -5.02 16.26 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H 0.05 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.11 1.55 6.91 -51.93 -0.36 1.19 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.10 1.23 6.94 -51.93 -0.36 0.87 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.14 2.98 5.34 -51.92 -0.28 2.71 16 41 H 0.11 2.20 8.14 -51.92 -0.42 1.78 16 42 H 0.02 0.56 5.98 -51.93 -0.31 0.25 16 43 H 0.10 2.64 5.93 -51.93 -0.31 2.33 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.04 1.00 8.14 -51.92 -0.42 0.58 16 46 H 0.09 2.56 6.06 -51.93 -0.31 2.25 16 47 H 0.02 0.58 5.46 -51.93 -0.28 0.29 16 48 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -31.86 363.95 -9.79 -41.65 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -8.07 Total: 5.62 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: -0.31 Total: -30.17 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.17 Total: -39.01 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.63 Total: -49.08 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.41 Total: 49.25 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.86 -9.79 -41.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331325543.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.675 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds