Wall clock time and date at job start Tue Mar 31 2020 17:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05522 * 2 1 4 4 N 1.47198 * 109.91205 * 238.80958 * 2 1 3 5 5 S 1.65606 * 125.66387 * 59.12412 * 4 2 1 6 6 O 1.42097 * 104.27643 * 153.64104 * 5 4 2 7 7 O 1.42097 * 104.27559 * 25.78324 * 5 4 2 8 8 C 1.81399 * 104.44968 * 269.71457 * 5 4 2 9 9 C 1.52997 * 109.47147 * 179.97438 * 8 5 4 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 5 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46926 * 60.00512 * 15 13 11 17 17 H 1.48506 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47227 * 300.00303 * 15 13 11 19 19 C 1.47483 * 108.67576 * 238.85699 * 4 2 1 20 20 C 1.55039 * 104.90685 * 24.24480 * 19 4 2 21 21 C 1.53617 * 109.80862 * 121.26045 * 2 1 3 22 22 C 1.52344 * 110.56802 * 216.37909 * 21 2 1 23 23 C 1.53256 * 109.21513 * 178.60132 * 22 21 2 24 24 O 1.42910 * 109.31167 * 303.63655 * 23 22 21 25 25 C 1.42923 * 114.25792 * 61.72645 * 24 23 22 26 26 C 1.52343 * 110.92559 * 339.75219 * 21 2 1 27 27 H 1.09003 * 109.46735 * 179.73516 * 1 2 3 28 28 H 1.08998 * 109.47082 * 299.73455 * 1 2 3 29 29 H 1.09000 * 109.47181 * 59.73802 * 1 2 3 30 30 H 1.09001 * 109.47186 * 59.99510 * 8 5 4 31 31 H 1.09004 * 109.47089 * 299.99935 * 8 5 4 32 32 H 1.09001 * 109.46832 * 60.00079 * 9 8 5 33 33 H 1.08993 * 109.47194 * 299.99600 * 9 8 5 34 34 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 35 35 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 36 36 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 37 37 H 1.08999 * 110.35868 * 143.10069 * 19 4 2 38 38 H 1.08999 * 110.35580 * 265.28519 * 19 4 2 39 39 H 1.09004 * 111.01282 * 81.73957 * 20 19 4 40 40 H 1.08994 * 111.01440 * 205.62156 * 20 19 4 41 41 H 1.09004 * 109.51763 * 298.52205 * 22 21 2 42 42 H 1.09001 * 109.51708 * 58.68175 * 22 21 2 43 43 H 1.08996 * 109.49949 * 183.68007 * 23 22 21 44 44 H 1.09004 * 109.49513 * 63.58217 * 23 22 21 45 45 H 1.09004 * 109.49401 * 178.32041 * 25 24 23 46 46 H 1.08995 * 109.49715 * 58.21915 * 25 24 23 47 47 H 1.08999 * 109.51602 * 301.52845 * 26 21 2 48 48 H 1.09001 * 109.51181 * 61.67895 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 7 2.0314 -0.7167 -1.1839 5 16 1.7110 -0.3208 -2.7597 6 8 2.8252 -0.8273 -3.4817 7 8 1.4347 1.0725 -2.7217 8 6 0.2108 -1.2564 -3.1655 9 6 -0.1920 -0.9711 -4.6137 10 6 -1.4571 -1.7607 -4.9561 11 6 -1.8543 -1.4792 -6.3823 12 1 -1.2633 -0.8049 -6.9844 13 6 -2.9715 -2.0833 -6.9188 14 7 -3.6908 -2.9048 -6.1858 15 14 -3.4634 -1.7349 -8.6869 16 1 -2.3630 -2.1435 -9.5965 17 1 -4.6906 -2.5022 -9.0196 18 1 -3.7274 -0.2828 -8.8503 19 6 2.8716 -1.8422 -0.7340 20 6 2.3757 -2.1618 0.6998 21 6 2.0506 -0.7500 1.2354 22 6 3.3124 -0.0862 1.7722 23 6 3.7845 -0.8368 3.0223 24 8 2.7272 -0.8662 3.9833 25 6 1.5513 -1.5481 3.5418 26 6 0.9790 -0.8294 2.3153 27 1 -0.3633 -1.0277 -0.0048 28 1 -0.3633 0.5097 0.8923 29 1 -0.3633 0.5179 -0.8876 30 1 -0.5967 -0.9555 -2.4981 31 1 0.4037 -2.3224 -3.0449 32 1 0.6154 -1.2717 -5.2813 33 1 -0.3851 0.0949 -4.7338 34 1 -1.2636 -2.8267 -4.8360 35 1 -2.2646 -1.4606 -4.2884 36 1 -4.4770 -3.3295 -6.5632 37 1 2.7303 -2.7049 -1.3850 38 1 3.9212 -1.5487 -0.7171 39 1 1.4822 -2.7857 0.6743 40 1 3.1623 -2.6322 1.2897 41 1 4.0927 -0.1186 1.0118 42 1 3.0969 0.9508 2.0299 43 1 4.6489 -0.3272 3.4478 44 1 4.0592 -1.8565 2.7522 45 1 0.8101 -1.5499 4.3412 46 1 1.8039 -2.5748 3.2769 47 1 0.6686 0.1773 2.5950 48 1 0.1205 -1.3838 1.9361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371993633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:21 Heat of formation + Delta-G solvation = -134.490803 kcal Electronic energy + Delta-G solvation = -27948.002414 eV Core-core repulsion = 24129.323973 eV Total energy + Delta-G solvation = -3818.678441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02121 -37.94885 -36.94656 -35.76137 -34.69596 -33.44774 -32.27561 -32.11396 -31.05653 -28.41654 -27.84098 -25.66422 -23.96035 -23.74786 -23.18105 -21.89371 -20.43466 -18.89019 -18.76831 -17.60128 -16.68954 -16.66072 -16.37148 -16.11623 -15.77264 -15.46527 -15.13609 -14.71355 -14.50701 -14.26797 -14.08033 -13.78473 -13.49706 -13.25408 -12.73429 -12.64385 -12.55922 -12.33265 -12.28467 -11.96752 -11.94596 -11.85507 -11.78816 -11.66358 -11.42242 -11.27716 -11.21940 -10.97514 -10.90462 -10.87358 -10.66496 -10.48289 -10.44337 -9.96691 -9.76713 -9.53216 -9.25966 -8.93502 -8.42067 -6.07259 -4.10438 0.39939 2.72768 3.30987 3.34776 3.38070 3.54056 3.90837 3.97559 4.10104 4.24746 4.39984 4.41178 4.63455 4.67258 4.78984 4.79175 4.96907 4.99603 5.09934 5.10733 5.13198 5.16076 5.25010 5.27927 5.29182 5.31622 5.34496 5.45991 5.53547 5.61285 5.65716 5.70461 5.74707 5.85897 5.88228 5.95132 6.05167 6.10777 6.21309 6.36168 6.43003 6.84932 6.85719 7.54638 7.64733 7.90563 8.31083 8.95498 9.54289 11.03946 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.002695 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.039088 B =10387.073198 C =10930.843950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.162 3.838 3 H 0.082 0.918 4 N -1.013 6.013 5 S 2.611 3.389 6 O -0.959 6.959 7 O -0.957 6.957 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.032 3.968 11 C -0.527 4.527 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.123 3.877 20 C -0.127 4.127 21 C -0.064 4.064 22 C -0.144 4.144 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.060 3.940 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.929 1.642 21.796 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.056 3.944 3 H 0.100 0.900 4 N -0.849 5.849 5 S 2.710 3.290 6 O -0.950 6.950 7 O -0.947 6.947 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.006 4.006 11 C -0.566 4.566 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.002 4.002 20 C -0.166 4.166 21 C -0.065 4.065 22 C -0.181 4.181 23 C -0.016 4.016 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.180 4.180 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.326 2.240 21.357 25.273 hybrid contribution -0.964 -0.488 -1.141 1.572 sum 12.362 1.752 20.215 23.760 Atomic orbital electron populations 1.22540 0.95077 1.03052 1.03692 1.21187 0.93855 0.95837 0.83520 0.90018 1.58954 1.62578 1.41342 1.22043 1.05090 0.77065 0.75352 0.71540 1.93561 1.49086 1.81928 1.70385 1.93557 1.86631 1.29483 1.85058 1.30672 1.19690 1.14709 1.09057 1.21507 1.02591 1.02144 0.88291 1.19045 0.89997 0.94913 0.96639 1.21218 1.10615 1.27296 0.97425 0.92427 1.25016 0.96318 0.94987 0.98016 1.69947 1.17192 1.29759 1.36560 0.86611 0.77906 0.78470 0.84781 1.20106 1.21224 1.20096 1.21951 0.94551 0.88461 0.95254 1.22943 1.02120 0.96049 0.95468 1.21067 0.95669 0.95626 0.94159 1.22132 0.97377 1.00514 0.98112 1.22649 0.90029 0.99658 0.89214 1.87920 1.24340 1.77526 1.40521 1.22653 0.87366 0.94897 0.96712 1.22233 0.98154 1.02553 0.95107 0.91288 0.90315 0.91669 0.85405 0.85529 0.91658 0.91620 0.96162 0.96150 0.92831 0.90529 0.91306 0.90068 0.89965 0.90315 0.90558 0.88884 0.92947 0.88854 0.93033 0.90458 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.77 7.51 37.16 0.28 -1.49 16 2 C 0.16 1.62 2.91 -67.23 -0.20 1.42 16 3 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 4 N -1.01 -11.76 3.35 -104.57 -0.35 -12.11 16 5 S 2.61 40.29 5.16 -107.50 -0.55 39.74 16 6 O -0.96 -17.38 17.61 -57.54 -1.01 -18.40 16 7 O -0.96 -17.19 17.22 -57.54 -0.99 -18.18 16 8 C -0.61 -9.60 6.18 37.16 0.23 -9.38 16 9 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 10 C 0.03 0.82 4.97 -27.88 -0.14 0.68 16 11 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.12 1.15 6.57 -2.43 -0.02 1.13 16 20 C -0.13 -0.89 5.08 -24.89 -0.13 -1.02 16 21 C -0.06 -0.48 0.49 -154.09 -0.07 -0.56 16 22 C -0.14 -1.03 4.76 -26.93 -0.13 -1.16 16 23 C 0.06 0.41 6.65 37.29 0.25 0.65 16 24 O -0.38 -3.26 10.75 -35.23 -0.38 -3.64 16 25 C 0.06 0.40 6.66 37.28 0.25 0.64 16 26 C -0.14 -0.94 3.63 -26.94 -0.10 -1.04 16 27 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 28 H 0.08 0.61 6.67 -51.93 -0.35 0.26 16 29 H 0.06 0.73 6.92 -51.93 -0.36 0.37 16 30 H 0.13 1.82 6.97 -51.92 -0.36 1.46 16 31 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.61 7.71 -51.93 -0.40 0.21 16 39 H 0.08 0.54 7.95 -51.93 -0.41 0.13 16 40 H 0.08 0.46 6.29 -51.93 -0.33 0.14 16 41 H 0.08 0.56 7.41 -51.93 -0.38 0.18 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.30 6.53 -51.93 -0.34 -0.04 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.05 0.30 7.59 -51.93 -0.39 -0.09 16 47 H 0.08 0.53 7.46 -51.93 -0.39 0.14 16 48 H 0.08 0.51 6.64 -51.93 -0.34 0.16 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -34.76 376.14 -10.42 -45.19 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -8.20 Total: -2.95 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -0.32 Total: -26.07 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.39 Total: -37.94 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -2.38 Total: -40.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 40.29 SS G_CDS: -0.55 Total: 39.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.76 -10.42 -45.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371993633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.303 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds