Wall clock time and date at job start Tue Mar 31 2020 17:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 110.05522 * 2 1 4 4 N 1.47198 * 109.91205 * 238.80958 * 2 1 3 5 5 S 1.65606 * 125.66387 * 59.12412 * 4 2 1 6 6 O 1.42097 * 104.27643 * 153.64104 * 5 4 2 7 7 O 1.42097 * 104.27559 * 25.78324 * 5 4 2 8 8 C 1.81399 * 104.44968 * 269.71457 * 5 4 2 9 9 C 1.52997 * 109.47147 * 179.97438 * 8 5 4 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 5 11 11 C 1.50698 * 109.47184 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99819 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00046 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46926 * 60.00512 * 15 13 11 17 17 H 1.48506 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47227 * 300.00303 * 15 13 11 19 19 C 1.47483 * 108.67576 * 238.85699 * 4 2 1 20 20 C 1.55039 * 104.90685 * 24.24480 * 19 4 2 21 21 C 1.53617 * 109.80862 * 121.26045 * 2 1 3 22 22 C 1.52344 * 110.56802 * 216.37909 * 21 2 1 23 23 C 1.53256 * 109.21513 * 178.60132 * 22 21 2 24 24 O 1.42910 * 109.31167 * 303.63655 * 23 22 21 25 25 C 1.42923 * 114.25792 * 61.72645 * 24 23 22 26 26 C 1.52343 * 110.92559 * 339.75219 * 21 2 1 27 27 H 1.09003 * 109.46735 * 179.73516 * 1 2 3 28 28 H 1.08998 * 109.47082 * 299.73455 * 1 2 3 29 29 H 1.09000 * 109.47181 * 59.73802 * 1 2 3 30 30 H 1.09001 * 109.47186 * 59.99510 * 8 5 4 31 31 H 1.09004 * 109.47089 * 299.99935 * 8 5 4 32 32 H 1.09001 * 109.46832 * 60.00079 * 9 8 5 33 33 H 1.08993 * 109.47194 * 299.99600 * 9 8 5 34 34 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 35 35 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 36 36 H 0.96997 * 119.99752 * 179.97438 * 14 13 11 37 37 H 1.08999 * 110.35868 * 143.10069 * 19 4 2 38 38 H 1.08999 * 110.35580 * 265.28519 * 19 4 2 39 39 H 1.09004 * 111.01282 * 81.73957 * 20 19 4 40 40 H 1.08994 * 111.01440 * 205.62156 * 20 19 4 41 41 H 1.09004 * 109.51763 * 298.52205 * 22 21 2 42 42 H 1.09001 * 109.51708 * 58.68175 * 22 21 2 43 43 H 1.08996 * 109.49949 * 183.68007 * 23 22 21 44 44 H 1.09004 * 109.49513 * 63.58217 * 23 22 21 45 45 H 1.09004 * 109.49401 * 178.32041 * 25 24 23 46 46 H 1.08995 * 109.49715 * 58.21915 * 25 24 23 47 47 H 1.08999 * 109.51602 * 301.52845 * 26 21 2 48 48 H 1.09001 * 109.51181 * 61.67895 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 7 2.0314 -0.7167 -1.1839 5 16 1.7110 -0.3208 -2.7597 6 8 2.8252 -0.8273 -3.4817 7 8 1.4347 1.0725 -2.7217 8 6 0.2108 -1.2564 -3.1655 9 6 -0.1920 -0.9711 -4.6137 10 6 -1.4571 -1.7607 -4.9561 11 6 -1.8543 -1.4792 -6.3823 12 1 -1.2633 -0.8049 -6.9844 13 6 -2.9715 -2.0833 -6.9188 14 7 -3.6908 -2.9048 -6.1858 15 14 -3.4634 -1.7349 -8.6869 16 1 -2.3630 -2.1435 -9.5965 17 1 -4.6906 -2.5022 -9.0196 18 1 -3.7274 -0.2828 -8.8503 19 6 2.8716 -1.8422 -0.7340 20 6 2.3757 -2.1618 0.6998 21 6 2.0506 -0.7500 1.2354 22 6 3.3124 -0.0862 1.7722 23 6 3.7845 -0.8368 3.0223 24 8 2.7272 -0.8662 3.9833 25 6 1.5513 -1.5481 3.5418 26 6 0.9790 -0.8294 2.3153 27 1 -0.3633 -1.0277 -0.0048 28 1 -0.3633 0.5097 0.8923 29 1 -0.3633 0.5179 -0.8876 30 1 -0.5967 -0.9555 -2.4981 31 1 0.4037 -2.3224 -3.0449 32 1 0.6154 -1.2717 -5.2813 33 1 -0.3851 0.0949 -4.7338 34 1 -1.2636 -2.8267 -4.8360 35 1 -2.2646 -1.4606 -4.2884 36 1 -4.4770 -3.3295 -6.5632 37 1 2.7303 -2.7049 -1.3850 38 1 3.9212 -1.5487 -0.7171 39 1 1.4822 -2.7857 0.6743 40 1 3.1623 -2.6322 1.2897 41 1 4.0927 -0.1186 1.0118 42 1 3.0969 0.9508 2.0299 43 1 4.6489 -0.3272 3.4478 44 1 4.0592 -1.8565 2.7522 45 1 0.8101 -1.5499 4.3412 46 1 1.8039 -2.5748 3.2769 47 1 0.6686 0.1773 2.5950 48 1 0.1205 -1.3838 1.9361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371993633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:20 Heat of formation + Delta-G solvation = -158.434001 kcal Electronic energy + Delta-G solvation = -27949.040669 eV Core-core repulsion = 24129.323973 eV Total energy + Delta-G solvation = -3819.716696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.65019 -38.60305 -38.28702 -37.12084 -36.51339 -34.21296 -34.16220 -32.81476 -31.65090 -29.69870 -29.12895 -26.36361 -25.61104 -24.49588 -23.81291 -22.92347 -22.01550 -19.90757 -19.50865 -18.77097 -18.47665 -17.52363 -17.30598 -16.91837 -16.87337 -16.55911 -16.34245 -15.89931 -15.69610 -15.36035 -14.79635 -14.56107 -14.49674 -14.20001 -14.09592 -13.98454 -13.61468 -13.42603 -13.29597 -13.21517 -13.14699 -13.05516 -12.98518 -12.75819 -12.69162 -12.59579 -12.37623 -12.18562 -12.02960 -11.91454 -11.78626 -11.60144 -11.42261 -11.24440 -11.13935 -11.01454 -10.59100 -10.32413 -9.97613 -8.24564 -6.35846 -0.85196 1.38857 1.41384 1.49366 1.62446 2.38271 2.73763 2.97242 3.06550 3.08865 3.36547 3.52973 3.65545 3.70741 3.85810 4.08297 4.10403 4.18013 4.28977 4.32150 4.33235 4.36336 4.48987 4.54032 4.58219 4.60203 4.65252 4.73851 4.81188 4.85241 4.89059 4.92643 5.00208 5.02821 5.09633 5.11117 5.18024 5.25186 5.26619 5.35380 5.41923 5.44058 5.52831 5.59480 5.76558 6.17194 6.37145 6.79090 7.33494 8.86743 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023987 B = 0.002695 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.039088 B =10387.073198 C =10930.843950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.155 3.845 3 H 0.070 0.930 4 N -1.008 6.008 5 S 2.634 3.366 6 O -0.987 6.987 7 O -0.986 6.986 8 C -0.608 4.608 9 C -0.106 4.106 10 C 0.034 3.966 11 C -0.555 4.555 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.110 3.890 20 C -0.119 4.119 21 C -0.058 4.058 22 C -0.143 4.143 23 C 0.061 3.939 24 O -0.405 6.405 25 C 0.058 3.942 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.003 0.997 35 H 0.003 0.997 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.357 1.042 22.779 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.050 3.950 3 H 0.088 0.912 4 N -0.847 5.847 5 S 2.732 3.268 6 O -0.977 6.977 7 O -0.976 6.976 8 C -0.739 4.739 9 C -0.145 4.145 10 C -0.004 4.004 11 C -0.593 4.593 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.193 1.193 19 C -0.014 4.014 20 C -0.157 4.157 21 C -0.060 4.060 22 C -0.181 4.181 23 C -0.015 4.015 24 O -0.324 6.324 25 C -0.018 4.018 26 C -0.178 4.178 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.063 0.937 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.022 0.978 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.083 0.917 45 H 0.120 0.880 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 13.759 1.645 22.331 26.281 hybrid contribution -1.072 -0.299 -1.363 1.760 sum 12.686 1.345 20.968 24.544 Atomic orbital electron populations 1.22604 0.94749 1.03777 1.03634 1.21379 0.94250 0.95559 0.83815 0.91194 1.58623 1.62697 1.42353 1.20989 1.04102 0.76160 0.74344 0.72165 1.93519 1.50016 1.82192 1.72013 1.93514 1.86849 1.31311 1.85926 1.30624 1.20798 1.16251 1.06183 1.21318 1.00408 1.01258 0.91531 1.18927 0.91663 0.94509 0.95282 1.21705 1.11105 1.27515 0.98984 0.92256 1.25924 0.96259 0.94657 1.02583 1.70059 1.17665 1.30603 1.38533 0.85540 0.77816 0.78661 0.79319 1.19230 1.20486 1.19251 1.22270 0.94562 0.87749 0.96849 1.22966 1.03148 0.95750 0.93847 1.21041 0.96096 0.95634 0.93220 1.22119 0.97212 1.00240 0.98481 1.22727 0.89861 1.00360 0.88571 1.87900 1.25152 1.77947 1.41395 1.22766 0.87057 0.95182 0.96802 1.22224 0.98048 1.02651 0.94840 0.90123 0.88495 0.93720 0.83928 0.83686 0.91684 0.91754 0.97814 0.97867 0.92561 0.89997 0.90792 0.89117 0.87935 0.90372 0.91346 0.88190 0.91652 0.88018 0.91917 0.90833 0.88894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.39 7.51 71.98 0.54 -2.85 16 2 C 0.16 2.93 2.91 45.07 0.13 3.06 16 3 H 0.07 1.48 7.82 -2.39 -0.02 1.46 16 4 N -1.01 -22.33 3.35 -484.74 -1.62 -23.95 16 5 S 2.63 80.69 5.16 -56.49 -0.29 80.39 16 6 O -0.99 -35.57 17.61 -127.65 -2.25 -37.82 16 7 O -0.99 -35.75 17.22 -127.65 -2.20 -37.95 16 8 C -0.61 -18.93 6.18 71.98 0.44 -18.49 16 9 C -0.11 -4.40 5.16 30.60 0.16 -4.24 16 10 C 0.03 1.79 4.97 29.85 0.15 1.94 16 11 C -0.56 -31.77 9.11 25.60 0.23 -31.53 16 12 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 13 C 0.00 0.24 5.46 84.65 0.46 0.70 16 14 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 15 Si 0.96 44.20 29.54 68.60 2.03 46.23 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 C 0.11 1.84 6.57 86.89 0.57 2.41 16 20 C -0.12 -1.33 5.08 31.79 0.16 -1.16 16 21 C -0.06 -0.76 0.49 -51.91 -0.03 -0.79 16 22 C -0.14 -1.81 4.76 30.46 0.15 -1.67 16 23 C 0.06 0.68 6.65 72.07 0.48 1.16 16 24 O -0.40 -5.99 10.75 -148.98 -1.60 -7.59 16 25 C 0.06 0.61 6.66 72.06 0.48 1.09 16 26 C -0.14 -1.52 3.63 30.46 0.11 -1.41 16 27 H 0.08 1.24 7.48 -2.39 -0.02 1.22 16 28 H 0.10 1.35 6.67 -2.39 -0.02 1.33 16 29 H 0.04 0.98 6.92 -2.39 -0.02 0.97 16 30 H 0.14 3.99 6.97 -2.39 -0.02 3.97 16 31 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 32 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.17 7.71 -2.39 -0.02 1.15 16 39 H 0.09 0.89 7.95 -2.38 -0.02 0.87 16 40 H 0.10 0.78 6.29 -2.39 -0.02 0.76 16 41 H 0.08 1.00 7.41 -2.38 -0.02 0.98 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.55 6.53 -2.38 -0.02 0.53 16 45 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.06 0.52 7.59 -2.39 -0.02 0.50 16 47 H 0.07 0.87 7.46 -2.39 -0.02 0.85 16 48 H 0.09 0.85 6.64 -2.39 -0.02 0.84 16 Total: -1.00 -74.81 376.14 -0.68 -75.49 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.93 Total: 12.31 kcal Atomic # 6 Polarization: -55.83 SS G_CDS: 4.04 Total: -51.79 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -1.34 Total: -79.27 kcal Atomic # 8 Polarization: -77.31 SS G_CDS: -6.05 Total: -83.36 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 80.69 SS G_CDS: -0.29 Total: 80.39 kcal Total: -74.81 -0.68 -75.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371993633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.948 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds