Wall clock time and date at job start Tue Mar 31 2020 17:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51479 * 2 1 4 4 C 1.53289 * 109.51533 * 120.10353 * 2 1 3 5 5 N 1.47150 * 108.38816 * 172.22261 * 4 2 1 6 6 S 1.65607 * 120.97911 * 129.44043 * 5 4 2 7 7 O 1.42096 * 104.27984 * 333.93152 * 6 5 4 8 8 O 1.42099 * 104.27334 * 206.07217 * 6 5 4 9 9 C 1.81402 * 104.44565 * 90.00394 * 6 5 4 10 10 C 1.53005 * 109.46819 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47088 * 59.99849 * 10 9 6 12 12 C 1.53002 * 109.47199 * 299.99907 * 10 9 6 13 13 C 1.50699 * 109.46928 * 180.02562 * 10 9 6 14 14 H 1.08002 * 120.00309 * 359.91735 * 13 10 9 15 15 C 1.37882 * 119.99711 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00006 * 1.83416 * 15 13 10 17 17 Si 1.86808 * 119.99714 * 181.83799 * 15 13 10 18 18 H 1.48499 * 109.46552 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.46923 * 299.99637 * 17 15 13 20 20 H 1.48489 * 109.46925 * 59.99829 * 17 15 13 21 21 C 1.47152 * 118.03660 * 309.71905 * 5 4 2 22 22 C 1.52871 * 108.60607 * 50.22473 * 21 5 4 23 23 H 1.09004 * 109.41114 * 67.84380 * 22 21 5 24 24 C 1.53000 * 109.58041 * 187.92375 * 22 21 5 25 25 C 1.53002 * 117.49780 * 248.62526 * 24 22 21 26 26 C 1.53001 * 117.50065 * 179.97438 * 24 22 21 27 27 O 1.42963 * 109.51247 * 239.85047 * 2 1 3 28 28 H 1.08994 * 109.46762 * 299.89991 * 1 2 3 29 29 H 1.08998 * 109.46792 * 59.89857 * 1 2 3 30 30 H 1.08998 * 109.47052 * 179.89643 * 1 2 3 31 31 H 1.09003 * 109.68158 * 52.49868 * 4 2 1 32 32 H 1.08999 * 109.71382 * 291.96870 * 4 2 1 33 33 H 1.08998 * 109.47313 * 60.00323 * 9 6 5 34 34 H 1.09000 * 109.47195 * 299.99807 * 9 6 5 35 35 H 1.09001 * 109.47193 * 171.65120 * 11 10 9 36 36 H 1.08997 * 109.47250 * 291.65117 * 11 10 9 37 37 H 1.08999 * 109.47201 * 51.65426 * 11 10 9 38 38 H 1.09000 * 109.46752 * 308.63600 * 12 10 9 39 39 H 1.09002 * 109.47154 * 68.63703 * 12 10 9 40 40 H 1.08996 * 109.47180 * 188.63909 * 12 10 9 41 41 H 0.96997 * 120.00688 * 356.07780 * 16 15 13 42 42 H 1.09005 * 109.67805 * 170.00589 * 21 5 4 43 43 H 1.08995 * 109.67708 * 290.55538 * 21 5 4 44 44 H 1.08998 * 115.55421 * 34.30001 * 24 22 21 45 45 H 1.08997 * 117.50056 * 0.02562 * 25 24 22 46 46 H 1.09006 * 117.49947 * 145.02023 * 25 24 22 47 47 H 1.08998 * 117.50015 * 214.98186 * 26 24 22 48 48 H 1.09006 * 117.49743 * 359.97344 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5012 -0.8758 1.1338 6 16 4.5065 -0.4171 2.3673 7 8 3.7780 0.5889 3.0576 8 8 5.7376 -0.1187 1.7234 9 6 4.6694 -1.9033 3.3948 10 6 5.5866 -1.6042 4.5823 11 6 4.9873 -0.4704 5.4167 12 6 6.9657 -1.1855 4.0688 13 6 5.7224 -2.8390 5.4355 14 1 5.2051 -3.7459 5.1592 15 6 6.5062 -2.8105 6.5695 16 7 7.1062 -1.6960 6.9264 17 14 6.7158 -4.3552 7.5990 18 1 7.5991 -4.0625 8.7563 19 1 5.3892 -4.8059 8.0910 20 1 7.3252 -5.4246 6.7684 21 6 4.0410 -1.4407 -0.1131 22 6 3.4313 -0.6860 -1.2945 23 1 3.8029 0.3387 -1.3006 24 6 3.8212 -1.3788 -2.6018 25 6 4.7822 -0.6385 -3.5342 26 6 3.3032 -0.7694 -3.9061 27 8 2.0075 -0.6768 -1.1652 28 1 -0.3632 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0276 -0.0019 31 1 1.5758 -1.7073 1.3215 32 1 1.8031 -0.1396 2.1380 33 1 5.0968 -2.7108 2.8004 34 1 3.6868 -2.2018 3.7602 35 1 5.5582 -0.3566 6.3383 36 1 5.0261 0.4588 4.8483 37 1 3.9508 -0.7057 5.6582 38 1 7.3264 -1.9241 3.3528 39 1 6.8923 -0.2131 3.5819 40 1 7.6609 -1.1212 4.9058 41 1 7.0441 -0.9095 6.3621 42 1 5.1252 -1.3288 -0.1276 43 1 3.7795 -2.4966 -0.1811 44 1 3.9047 -2.4644 -2.5518 45 1 5.1369 0.3418 -3.2162 46 1 5.4977 -1.2372 -4.0980 47 1 3.0462 -1.4541 -4.7143 48 1 2.6842 0.1248 -3.8328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:30 Heat of formation + Delta-G solvation = -85.142141 kcal Electronic energy + Delta-G solvation = -28514.070979 eV Core-core repulsion = 24697.532456 eV Total energy + Delta-G solvation = -3816.538523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86681 -37.19278 -36.85980 -36.74648 -35.53696 -34.80590 -32.77632 -31.57949 -28.85076 -26.93387 -26.10391 -26.03459 -24.94289 -23.76737 -22.54262 -21.23418 -20.77921 -19.55015 -18.58682 -17.71219 -16.90962 -16.85923 -16.35460 -15.94669 -15.46145 -15.22858 -14.91400 -14.37464 -14.23104 -13.80773 -13.45017 -13.33267 -13.24839 -12.91572 -12.85732 -12.54735 -12.42502 -12.07559 -11.98956 -11.78912 -11.74544 -11.55443 -11.44941 -11.29094 -11.09473 -10.99342 -10.87436 -10.64074 -10.61488 -10.59268 -10.39437 -10.26650 -10.18985 -10.06575 -9.97169 -9.92792 -8.85847 -8.43117 -8.34641 -6.32002 -4.19326 0.63950 2.85807 3.16556 3.38580 3.39204 3.58498 3.83129 4.19867 4.25473 4.45573 4.53889 4.57845 4.61017 4.75130 4.78614 4.87444 4.98916 5.01576 5.22772 5.24511 5.28293 5.29934 5.42886 5.45103 5.51014 5.53737 5.58287 5.65765 5.67865 5.76200 5.88300 5.90195 5.98335 6.05155 6.12395 6.37791 6.43463 6.47892 6.57533 6.71159 6.98793 7.01655 7.05525 7.42502 7.52443 8.05626 8.29005 8.74667 9.51920 10.92976 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.003397 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.112873 B = 8240.768402 C = 8686.562672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.063 0.937 4 C 0.087 3.913 5 N -1.012 6.012 6 S 2.590 3.410 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.573 4.573 10 C 0.066 3.934 11 C -0.175 4.175 12 C -0.173 4.173 13 C -0.581 4.581 14 H 0.053 0.947 15 C 0.024 3.976 16 N -0.914 5.914 17 Si 1.067 2.933 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.288 1.288 21 C 0.092 3.908 22 C 0.114 3.886 23 H 0.063 0.937 24 C -0.150 4.150 25 C -0.173 4.173 26 C -0.164 4.164 27 O -0.370 6.370 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.032 0.968 40 H 0.082 0.918 41 H 0.282 0.718 42 H 0.105 0.895 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.095 0.905 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 1.098 -17.882 20.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 H 0.080 0.920 4 C -0.039 4.039 5 N -0.848 5.848 6 S 2.689 3.311 7 O -0.951 6.951 8 O -0.951 6.951 9 C -0.706 4.706 10 C 0.064 3.936 11 C -0.233 4.233 12 C -0.231 4.231 13 C -0.620 4.620 14 H 0.072 0.928 15 C -0.180 4.180 16 N -0.554 5.554 17 Si 0.895 3.105 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.034 4.034 22 C 0.055 3.945 23 H 0.081 0.919 24 C -0.169 4.169 25 C -0.210 4.210 26 C -0.201 4.201 27 O -0.289 6.289 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.240 1.330 -16.542 18.995 hybrid contribution -0.745 -0.130 -1.100 1.334 sum -9.984 1.200 -17.642 20.307 Atomic orbital electron populations 1.21735 0.92243 1.03234 1.02831 1.22401 0.95300 0.95400 0.85092 0.91951 1.22167 0.79878 1.01869 0.99980 1.58114 1.16662 1.80429 1.29572 1.05817 0.73265 0.78040 0.73932 1.93533 1.72315 1.55361 1.73890 1.93535 1.43707 1.83848 1.73971 1.30475 1.09645 1.18070 1.12445 1.18092 0.89427 0.96788 0.89302 1.22468 1.01181 0.96371 1.03314 1.22444 1.00548 0.98588 1.01544 1.21713 1.32952 0.96146 1.11231 0.92829 1.25769 0.93108 1.02758 0.96403 1.70856 1.42455 1.02313 1.39754 0.83573 0.76495 0.74211 0.76199 1.20641 1.21444 1.21408 1.21991 1.00168 0.97996 0.83259 1.21777 0.81692 0.98383 0.92696 0.91897 1.22118 1.05377 0.99411 0.89980 1.23059 0.93156 1.02128 1.02609 1.22832 0.96474 1.03241 0.97523 1.87931 1.20401 1.77536 1.43030 0.90596 0.91559 0.91492 0.90649 0.87826 0.86241 0.86242 0.89663 0.94981 0.93473 0.93413 0.94895 0.89988 0.90147 0.87679 0.90672 0.86893 0.88501 0.88180 0.88664 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 37.16 0.36 -0.88 16 2 C 0.08 0.88 3.40 -26.58 -0.09 0.79 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.09 1.09 5.96 -3.54 -0.02 1.07 16 5 N -1.01 -14.76 3.28 -113.31 -0.37 -15.13 16 6 S 2.59 47.87 4.51 -107.50 -0.48 47.39 16 7 O -0.96 -19.66 14.42 -57.54 -0.83 -20.49 16 8 O -0.96 -19.67 14.42 -57.54 -0.83 -20.50 16 9 C -0.57 -11.24 5.10 37.16 0.19 -11.05 16 10 C 0.07 1.60 0.52 -155.66 -0.08 1.52 16 11 C -0.18 -4.25 7.36 37.16 0.27 -3.98 16 12 C -0.17 -4.18 7.35 37.16 0.27 -3.91 16 13 C -0.58 -15.49 8.01 -34.44 -0.28 -15.77 16 14 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 15 C 0.02 0.66 5.09 -17.82 -0.09 0.56 16 16 N -0.91 -26.24 12.09 55.43 0.67 -25.57 16 17 Si 1.07 24.22 29.90 -169.99 -5.08 19.13 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.09 1.17 5.92 -3.75 -0.02 1.15 16 22 C 0.11 1.34 2.96 -26.80 -0.08 1.26 16 23 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 24 C -0.15 -1.45 5.39 -90.62 -0.49 -1.94 16 25 C -0.17 -1.46 10.18 -26.70 -0.27 -1.73 16 26 C -0.16 -1.39 10.16 -26.70 -0.27 -1.66 16 27 O -0.37 -4.50 9.94 -35.23 -0.35 -4.85 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.32 6.88 -51.93 -0.36 0.96 16 33 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16 34 H 0.12 2.16 8.14 -51.92 -0.42 1.73 16 35 H 0.08 2.22 5.17 -51.93 -0.27 1.95 16 36 H 0.03 0.73 6.03 -51.93 -0.31 0.42 16 37 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 38 H 0.05 1.09 8.13 -51.93 -0.42 0.67 16 39 H 0.03 0.75 6.05 -51.93 -0.31 0.43 16 40 H 0.08 2.12 5.28 -51.93 -0.27 1.84 16 41 H 0.28 7.95 3.61 -40.82 -0.15 7.80 16 42 H 0.11 1.38 6.87 -51.93 -0.36 1.02 16 43 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 44 H 0.11 1.00 8.10 -51.93 -0.42 0.58 16 45 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -32.38 374.31 -10.21 -42.59 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.97 Total: 6.34 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -0.60 Total: -34.55 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.30 Total: -40.70 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.01 Total: -45.84 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.08 Total: 19.13 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.48 Total: 47.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.38 -10.21 -42.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.550 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds