Wall clock time and date at job start Tue Mar 31 2020 17:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.51479 * 2 1 4 4 C 1.53289 * 109.51533 * 120.10353 * 2 1 3 5 5 N 1.47150 * 108.38816 * 172.22261 * 4 2 1 6 6 S 1.65607 * 120.97911 * 129.44043 * 5 4 2 7 7 O 1.42096 * 104.27984 * 333.93152 * 6 5 4 8 8 O 1.42099 * 104.27334 * 206.07217 * 6 5 4 9 9 C 1.81402 * 104.44565 * 90.00394 * 6 5 4 10 10 C 1.53005 * 109.46819 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47088 * 59.99849 * 10 9 6 12 12 C 1.53002 * 109.47199 * 299.99907 * 10 9 6 13 13 C 1.50699 * 109.46928 * 180.02562 * 10 9 6 14 14 H 1.08002 * 120.00309 * 359.91735 * 13 10 9 15 15 C 1.37882 * 119.99711 * 179.97438 * 13 10 9 16 16 N 1.31507 * 120.00006 * 1.83416 * 15 13 10 17 17 Si 1.86808 * 119.99714 * 181.83799 * 15 13 10 18 18 H 1.48499 * 109.46552 * 180.02562 * 17 15 13 19 19 H 1.48499 * 109.46923 * 299.99637 * 17 15 13 20 20 H 1.48489 * 109.46925 * 59.99829 * 17 15 13 21 21 C 1.47152 * 118.03660 * 309.71905 * 5 4 2 22 22 C 1.52871 * 108.60607 * 50.22473 * 21 5 4 23 23 H 1.09004 * 109.41114 * 67.84380 * 22 21 5 24 24 C 1.53000 * 109.58041 * 187.92375 * 22 21 5 25 25 C 1.53002 * 117.49780 * 248.62526 * 24 22 21 26 26 C 1.53001 * 117.50065 * 179.97438 * 24 22 21 27 27 O 1.42963 * 109.51247 * 239.85047 * 2 1 3 28 28 H 1.08994 * 109.46762 * 299.89991 * 1 2 3 29 29 H 1.08998 * 109.46792 * 59.89857 * 1 2 3 30 30 H 1.08998 * 109.47052 * 179.89643 * 1 2 3 31 31 H 1.09003 * 109.68158 * 52.49868 * 4 2 1 32 32 H 1.08999 * 109.71382 * 291.96870 * 4 2 1 33 33 H 1.08998 * 109.47313 * 60.00323 * 9 6 5 34 34 H 1.09000 * 109.47195 * 299.99807 * 9 6 5 35 35 H 1.09001 * 109.47193 * 171.65120 * 11 10 9 36 36 H 1.08997 * 109.47250 * 291.65117 * 11 10 9 37 37 H 1.08999 * 109.47201 * 51.65426 * 11 10 9 38 38 H 1.09000 * 109.46752 * 308.63600 * 12 10 9 39 39 H 1.09002 * 109.47154 * 68.63703 * 12 10 9 40 40 H 1.08996 * 109.47180 * 188.63909 * 12 10 9 41 41 H 0.96997 * 120.00688 * 356.07780 * 16 15 13 42 42 H 1.09005 * 109.67805 * 170.00589 * 21 5 4 43 43 H 1.08995 * 109.67708 * 290.55538 * 21 5 4 44 44 H 1.08998 * 115.55421 * 34.30001 * 24 22 21 45 45 H 1.08997 * 117.50056 * 0.02562 * 25 24 22 46 46 H 1.09006 * 117.49947 * 145.02023 * 25 24 22 47 47 H 1.08998 * 117.50015 * 214.98186 * 26 24 22 48 48 H 1.09006 * 117.49743 * 359.97344 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5012 -0.8758 1.1338 6 16 4.5065 -0.4171 2.3673 7 8 3.7780 0.5889 3.0576 8 8 5.7376 -0.1187 1.7234 9 6 4.6694 -1.9033 3.3948 10 6 5.5866 -1.6042 4.5823 11 6 4.9873 -0.4704 5.4167 12 6 6.9657 -1.1855 4.0688 13 6 5.7224 -2.8390 5.4355 14 1 5.2051 -3.7459 5.1592 15 6 6.5062 -2.8105 6.5695 16 7 7.1062 -1.6960 6.9264 17 14 6.7158 -4.3552 7.5990 18 1 7.5991 -4.0625 8.7563 19 1 5.3892 -4.8059 8.0910 20 1 7.3252 -5.4246 6.7684 21 6 4.0410 -1.4407 -0.1131 22 6 3.4313 -0.6860 -1.2945 23 1 3.8029 0.3387 -1.3006 24 6 3.8212 -1.3788 -2.6018 25 6 4.7822 -0.6385 -3.5342 26 6 3.3032 -0.7694 -3.9061 27 8 2.0075 -0.6768 -1.1652 28 1 -0.3632 0.5123 0.8909 29 1 -0.3633 0.5154 -0.8891 30 1 -0.3633 -1.0276 -0.0019 31 1 1.5758 -1.7073 1.3215 32 1 1.8031 -0.1396 2.1380 33 1 5.0968 -2.7108 2.8004 34 1 3.6868 -2.2018 3.7602 35 1 5.5582 -0.3566 6.3383 36 1 5.0261 0.4588 4.8483 37 1 3.9508 -0.7057 5.6582 38 1 7.3264 -1.9241 3.3528 39 1 6.8923 -0.2131 3.5819 40 1 7.6609 -1.1212 4.9058 41 1 7.0441 -0.9095 6.3621 42 1 5.1252 -1.3288 -0.1276 43 1 3.7795 -2.4966 -0.1811 44 1 3.9047 -2.4644 -2.5518 45 1 5.1369 0.3418 -3.2162 46 1 5.4977 -1.2372 -4.0980 47 1 3.0462 -1.4541 -4.7143 48 1 2.6842 0.1248 -3.8328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:30 Heat of formation + Delta-G solvation = -105.065321 kcal Electronic energy + Delta-G solvation = -28514.934913 eV Core-core repulsion = 24697.532456 eV Total energy + Delta-G solvation = -3817.402457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78898 -38.75402 -38.37271 -37.86609 -37.09080 -35.88965 -33.62024 -33.54707 -29.76581 -28.60834 -28.05185 -27.08038 -26.91996 -24.69585 -23.20243 -22.15017 -21.60476 -21.42209 -19.93804 -19.29162 -18.60325 -17.82570 -17.47343 -17.23376 -16.67937 -16.19442 -16.03855 -15.66017 -15.49368 -15.30199 -15.18877 -14.93352 -14.64792 -14.10542 -13.98022 -13.79726 -13.63835 -13.41170 -13.26438 -13.21753 -12.99850 -12.83563 -12.66469 -12.55055 -12.52830 -12.39433 -12.35851 -12.11511 -12.03292 -11.91091 -11.85427 -11.80325 -11.64650 -11.36864 -11.15134 -11.07503 -10.46874 -10.38761 -9.83510 -8.43122 -6.32289 -0.83500 1.55464 1.56091 1.62374 1.81331 2.36265 2.58461 2.72452 2.99804 3.12574 3.20422 3.48997 3.53639 3.76413 3.80815 3.90808 3.95766 4.01827 4.08652 4.14651 4.19960 4.27644 4.33748 4.36492 4.48205 4.54951 4.58689 4.66825 4.69504 4.75799 4.77585 4.80649 4.84814 4.91652 5.01935 5.03505 5.06804 5.09647 5.23735 5.26928 5.27980 5.39500 5.48371 5.57160 6.04285 6.14980 6.22051 6.64056 7.47151 8.82393 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019438 B = 0.003397 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.112873 B = 8240.768402 C = 8686.562672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.074 3.926 3 H 0.052 0.948 4 C 0.078 3.922 5 N -1.005 6.005 6 S 2.609 3.391 7 O -0.983 6.983 8 O -0.983 6.983 9 C -0.578 4.578 10 C 0.052 3.948 11 C -0.171 4.171 12 C -0.169 4.169 13 C -0.592 4.592 14 H 0.056 0.944 15 C -0.024 4.024 16 N -0.942 5.942 17 Si 1.109 2.891 18 H -0.288 1.288 19 H -0.272 1.272 20 H -0.271 1.271 21 C 0.084 3.916 22 C 0.114 3.886 23 H 0.050 0.950 24 C -0.161 4.161 25 C -0.170 4.170 26 C -0.158 4.158 27 O -0.372 6.372 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.275 0.725 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.111 0.889 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -0.386 -19.506 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.014 3.986 3 H 0.070 0.930 4 C -0.047 4.047 5 N -0.844 5.844 6 S 2.708 3.292 7 O -0.974 6.974 8 O -0.974 6.974 9 C -0.710 4.710 10 C 0.050 3.950 11 C -0.229 4.229 12 C -0.227 4.227 13 C -0.630 4.630 14 H 0.075 0.925 15 C -0.223 4.223 16 N -0.583 5.583 17 Si 0.932 3.068 18 H -0.214 1.214 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.041 4.041 22 C 0.054 3.946 23 H 0.068 0.932 24 C -0.180 4.180 25 C -0.207 4.207 26 C -0.195 4.195 27 O -0.292 6.292 28 H 0.106 0.894 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.109 0.891 46 H 0.134 0.866 47 H 0.129 0.871 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.722 -0.155 -18.171 21.100 hybrid contribution -0.330 0.381 -0.679 0.845 sum -11.053 0.226 -18.850 21.853 Atomic orbital electron populations 1.21744 0.89935 1.04038 1.03810 1.22526 0.97058 0.94586 0.84384 0.93026 1.22465 0.78423 1.03286 1.00537 1.57791 1.17277 1.80405 1.28908 1.04965 0.72954 0.77320 0.73954 1.93497 1.72707 1.56191 1.74957 1.93499 1.45410 1.84104 1.74353 1.30433 1.09527 1.19621 1.11414 1.18111 0.90256 0.95823 0.90821 1.22401 1.01050 0.97003 1.02460 1.22378 1.00400 0.99158 1.00761 1.22067 1.32388 0.97094 1.11493 0.92539 1.27047 0.92836 1.04467 0.97978 1.70931 1.44022 1.02943 1.40373 0.83024 0.77112 0.71726 0.74926 1.21420 1.19738 1.19673 1.22243 0.99995 0.99289 0.82562 1.21793 0.81555 0.97813 0.93397 0.93247 1.22152 1.06607 0.99931 0.89327 1.23142 0.93546 1.01932 1.02120 1.22889 0.96346 1.03112 0.97152 1.87943 1.20481 1.77490 1.43244 0.89361 0.90896 0.90741 0.88495 0.88144 0.84695 0.84688 0.91952 0.94423 0.92895 0.92749 0.94358 0.92240 0.90910 0.88283 0.88544 0.85772 0.89127 0.86621 0.87083 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.57 71.98 0.69 -1.36 16 2 C 0.07 1.56 3.40 30.69 0.10 1.67 16 3 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.08 1.81 5.96 86.35 0.51 2.32 16 5 N -1.01 -27.84 3.28 -512.39 -1.68 -29.52 16 6 S 2.61 94.51 4.51 -56.49 -0.25 94.26 16 7 O -0.98 -39.87 14.42 -127.65 -1.84 -41.71 16 8 O -0.98 -40.00 14.42 -127.65 -1.84 -41.84 16 9 C -0.58 -21.96 5.10 71.98 0.37 -21.59 16 10 C 0.05 2.50 0.52 -52.93 -0.03 2.48 16 11 C -0.17 -8.38 7.36 71.98 0.53 -7.85 16 12 C -0.17 -8.24 7.35 71.98 0.53 -7.71 16 13 C -0.59 -31.27 8.01 25.60 0.21 -31.06 16 14 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 15 C -0.02 -1.33 5.09 84.66 0.43 -0.90 16 16 N -0.94 -55.08 12.09 21.45 0.26 -54.82 16 17 Si 1.11 48.28 29.90 68.60 2.05 50.34 16 18 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 20 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 21 C 0.08 2.02 5.92 86.21 0.51 2.53 16 22 C 0.11 2.53 2.96 30.55 0.09 2.62 16 23 H 0.05 1.21 7.90 -2.38 -0.02 1.20 16 24 C -0.16 -2.81 5.39 -10.79 -0.06 -2.87 16 25 C -0.17 -2.58 10.18 30.61 0.31 -2.27 16 26 C -0.16 -2.36 10.16 30.61 0.31 -2.05 16 27 O -0.37 -8.37 9.94 -148.98 -1.48 -9.85 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.41 6.88 -2.39 -0.02 2.39 16 33 H 0.13 4.63 8.14 -2.39 -0.02 4.61 16 34 H 0.13 4.63 8.14 -2.39 -0.02 4.61 16 35 H 0.06 3.33 5.17 -2.39 -0.01 3.32 16 36 H 0.04 1.75 6.03 -2.39 -0.01 1.73 16 37 H 0.05 2.44 8.13 -2.39 -0.02 2.42 16 38 H 0.05 2.49 8.13 -2.39 -0.02 2.47 16 39 H 0.04 1.77 6.05 -2.39 -0.01 1.76 16 40 H 0.06 3.15 5.28 -2.39 -0.01 3.14 16 41 H 0.28 16.01 3.61 -92.71 -0.33 15.67 16 42 H 0.10 2.50 6.87 -2.38 -0.02 2.48 16 43 H 0.10 1.90 8.12 -2.39 -0.02 1.88 16 44 H 0.12 1.87 8.10 -2.39 -0.02 1.85 16 45 H 0.09 1.48 8.05 -2.39 -0.02 1.46 16 46 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 47 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -68.99 374.31 1.09 -67.90 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 1.37 Total: 31.28 kcal Atomic # 6 Polarization: -70.54 SS G_CDS: 4.51 Total: -66.04 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -1.42 Total: -84.34 kcal Atomic # 8 Polarization: -88.24 SS G_CDS: -5.16 Total: -93.40 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.05 Total: 50.34 kcal Atomic # 16 Polarization: 94.51 SS G_CDS: -0.25 Total: 94.26 kcal Total: -68.99 1.09 -67.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.162 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds