Wall clock time and date at job start Tue Mar 31 2020 17:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51419 * 2 1 4 4 C 1.53301 * 109.51751 * 239.90299 * 2 1 3 5 5 N 1.47149 * 108.38688 * 187.72309 * 4 2 1 6 6 S 1.65600 * 120.97936 * 230.51030 * 5 4 2 7 7 O 1.42099 * 104.28099 * 333.93096 * 6 5 4 8 8 O 1.42095 * 104.27884 * 206.06994 * 6 5 4 9 9 C 1.81409 * 104.45067 * 89.99875 * 6 5 4 10 10 C 1.52999 * 109.47165 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47230 * 60.00103 * 10 9 6 12 12 C 1.52999 * 109.46882 * 300.00195 * 10 9 6 13 13 C 1.50700 * 109.46753 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00279 * 5.41238 * 13 10 9 15 15 C 1.37877 * 119.99488 * 185.40926 * 13 10 9 16 16 N 1.31515 * 119.99543 * 150.79217 * 15 13 10 17 17 Si 1.86795 * 120.00258 * 330.79080 * 15 13 10 18 18 H 1.48505 * 109.47263 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47446 * 299.99957 * 17 15 13 20 20 H 1.48496 * 109.47142 * 60.00301 * 17 15 13 21 21 C 1.47144 * 118.03771 * 50.78100 * 5 4 2 22 22 C 1.53711 * 108.16601 * 309.16155 * 21 5 4 23 23 H 1.08998 * 109.65764 * 292.57191 * 22 21 5 24 24 C 1.53002 * 109.48859 * 172.39504 * 22 21 5 25 25 C 1.52997 * 117.50056 * 249.10856 * 24 22 21 26 26 C 1.52996 * 117.49826 * 180.44820 * 24 22 21 27 27 O 1.42960 * 109.55925 * 120.12760 * 2 1 3 28 28 H 1.08998 * 109.46460 * 180.09528 * 1 2 3 29 29 H 1.09000 * 109.47193 * 300.09729 * 1 2 3 30 30 H 1.09002 * 109.47118 * 60.10332 * 1 2 3 31 31 H 1.09001 * 109.67814 * 67.99038 * 4 2 1 32 32 H 1.09004 * 109.67773 * 307.44755 * 4 2 1 33 33 H 1.09000 * 109.46890 * 59.99866 * 9 6 5 34 34 H 1.08999 * 109.47031 * 300.00439 * 9 6 5 35 35 H 1.08997 * 109.47026 * 172.48475 * 11 10 9 36 36 H 1.09005 * 109.47027 * 292.48795 * 11 10 9 37 37 H 1.09003 * 109.46712 * 52.48039 * 11 10 9 38 38 H 1.09004 * 109.47449 * 303.42061 * 12 10 9 39 39 H 1.08992 * 109.47356 * 63.42581 * 12 10 9 40 40 H 1.09004 * 109.46916 * 183.42439 * 12 10 9 41 41 H 0.96990 * 120.00449 * 354.96457 * 16 15 13 42 42 H 1.09008 * 109.67879 * 68.94049 * 21 5 4 43 43 H 1.09004 * 109.68332 * 189.48950 * 21 5 4 44 44 H 1.09003 * 115.54360 * 34.78012 * 24 22 21 45 45 H 1.09003 * 117.49943 * 0.02562 * 25 24 22 46 46 H 1.09004 * 117.49731 * 145.01821 * 25 24 22 47 47 H 1.09002 * 117.49822 * 214.98237 * 26 24 22 48 48 H 1.09003 * 117.50337 * 0.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0422 -0.7246 -1.2501 5 7 3.5014 -0.8745 -1.1346 6 16 4.5058 -0.4164 -2.3690 7 8 3.6997 -0.5225 -3.5344 8 8 5.6604 -1.2273 -2.2006 9 6 4.8914 1.3211 -2.0178 10 6 5.8247 1.8654 -3.1011 11 6 5.1390 1.7608 -4.4648 12 6 7.1185 1.0489 -3.1168 13 6 6.1455 3.3085 -2.8089 14 1 5.7980 3.7644 -1.8936 15 6 6.8828 4.0469 -3.7102 16 7 6.7035 5.3468 -3.7978 17 14 8.1362 3.2010 -4.8067 18 1 8.7909 4.2088 -5.6792 19 1 9.1620 2.5355 -3.9641 20 1 7.4528 2.1863 -5.6484 21 6 4.0415 -1.4490 0.1078 22 6 3.4324 -0.6842 1.2939 23 1 3.8033 0.3407 1.2986 24 6 3.8233 -1.3753 2.6017 25 6 2.7159 -2.0824 3.3856 26 6 3.3019 -0.7672 3.9053 27 8 2.0086 -0.6761 1.1651 28 1 -0.3632 -1.0277 0.0017 29 1 -0.3633 0.5153 0.8891 30 1 -0.3633 0.5122 -0.8909 31 1 1.8023 -0.1392 -2.1378 32 1 1.5766 -1.7076 -1.3212 33 1 5.3803 1.3955 -1.0464 34 1 3.9696 1.9026 -2.0060 35 1 5.7447 2.2677 -5.2158 36 1 5.0277 0.7108 -4.7359 37 1 4.1560 2.2291 -4.4140 38 1 7.5759 1.0735 -2.1277 39 1 6.8939 0.0173 -3.3876 40 1 7.8077 1.4742 -3.8464 41 1 6.0029 5.7756 -3.2819 42 1 3.7738 -2.5039 0.1711 43 1 5.1264 -1.3438 0.1197 44 1 4.8165 -1.8242 2.6175 45 1 1.7088 -2.0556 2.9694 46 1 2.9806 -2.9963 3.9175 47 1 3.9520 -0.8164 4.7789 48 1 2.6801 0.1249 3.8312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:34 Heat of formation + Delta-G solvation = -78.806764 kcal Electronic energy + Delta-G solvation = -28834.353879 eV Core-core repulsion = 25018.090079 eV Total energy + Delta-G solvation = -3816.263800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.92957 -37.08162 -36.78392 -36.68613 -35.57714 -34.81089 -32.71982 -32.05619 -28.91933 -27.42215 -26.39453 -26.15662 -24.57046 -23.73025 -22.57964 -21.42913 -20.48071 -19.62385 -18.61792 -17.68934 -16.93389 -16.83915 -16.14775 -16.01001 -15.79964 -15.46387 -14.88625 -14.69931 -14.51458 -14.06992 -13.45013 -13.25444 -13.22726 -12.97075 -12.80822 -12.54345 -12.49916 -12.23304 -12.07192 -11.98324 -11.78856 -11.63186 -11.55630 -11.51114 -11.39219 -11.16298 -11.04169 -10.84447 -10.73193 -10.52169 -10.35158 -10.22120 -10.13416 -9.97966 -9.82210 -9.07414 -9.01114 -8.78541 -8.20091 -6.60794 -4.18132 0.57818 2.80493 3.32331 3.32808 3.38393 3.59126 3.65298 4.14322 4.24055 4.40693 4.53345 4.56465 4.59115 4.74070 4.79122 4.89158 4.98033 5.02358 5.09771 5.18625 5.21726 5.28134 5.34490 5.43418 5.50031 5.51221 5.56075 5.68025 5.71967 5.76050 5.92132 5.95093 5.97357 6.01366 6.09233 6.19516 6.28565 6.39470 6.42673 6.48048 6.70569 6.84346 7.02405 7.13226 7.30728 7.97443 8.25013 8.75624 9.44202 10.74549 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003872 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.548967 B = 7230.579027 C = 7418.062094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.065 0.935 4 C 0.094 3.906 5 N -1.011 6.011 6 S 2.587 3.413 7 O -0.958 6.958 8 O -0.959 6.959 9 C -0.572 4.572 10 C 0.060 3.940 11 C -0.170 4.170 12 C -0.180 4.180 13 C -0.603 4.603 14 H 0.062 0.938 15 C 0.046 3.954 16 N -0.883 5.883 17 Si 1.037 2.963 18 H -0.295 1.295 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.098 3.902 22 C 0.107 3.893 23 H 0.069 0.931 24 C -0.156 4.156 25 C -0.163 4.163 26 C -0.172 4.172 27 O -0.370 6.370 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.272 0.728 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -12.837 11.828 20.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.083 0.917 4 C -0.032 4.032 5 N -0.847 5.847 6 S 2.686 3.314 7 O -0.949 6.949 8 O -0.950 6.950 9 C -0.705 4.705 10 C 0.057 3.943 11 C -0.228 4.228 12 C -0.237 4.237 13 C -0.641 4.641 14 H 0.080 0.920 15 C -0.162 4.162 16 N -0.514 5.514 17 Si 0.869 3.131 18 H -0.223 1.223 19 H -0.210 1.210 20 H -0.200 1.200 21 C -0.027 4.027 22 C 0.048 3.952 23 H 0.087 0.913 24 C -0.175 4.175 25 C -0.200 4.200 26 C -0.209 4.209 27 O -0.289 6.289 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.137 0.863 45 H 0.124 0.876 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.041 -13.226 10.104 18.941 hybrid contribution -0.982 0.423 1.464 1.813 sum -10.023 -12.804 11.568 19.955 Atomic orbital electron populations 1.21735 0.92256 1.03177 1.02933 1.22501 0.95403 0.95540 0.85233 0.91681 1.22102 0.79834 1.02218 0.99049 1.58128 1.16365 1.77982 1.32230 1.05958 0.73454 0.78693 0.73292 1.93548 1.68611 1.87140 1.45578 1.93541 1.49465 1.66581 1.85380 1.30445 1.09960 1.20129 1.09950 1.18188 0.89401 0.97797 0.88898 1.22623 1.01484 0.99657 0.99003 1.22775 1.00316 0.98285 1.02284 1.21558 1.40856 0.93131 1.08550 0.92025 1.25675 0.98340 0.95352 0.96817 1.70857 1.32599 1.11375 1.36555 0.84379 0.77313 0.74722 0.76649 1.22273 1.21019 1.20037 1.22091 0.99363 0.98394 0.82897 1.21956 0.81742 0.98638 0.92867 0.91285 1.22249 0.99482 1.05042 0.90712 1.22860 0.99027 0.95559 1.02528 1.22939 1.03779 0.97839 0.96388 1.87887 1.20394 1.77503 1.43102 0.91568 0.91505 0.90571 0.88290 0.90451 0.86152 0.86071 0.91407 0.94440 0.92604 0.92017 0.93731 0.92867 0.91780 0.90307 0.88258 0.86284 0.87635 0.89170 0.88847 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 37.16 0.36 -0.82 16 2 C 0.07 0.77 3.40 -26.58 -0.09 0.68 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 C 0.09 1.12 5.79 -3.53 -0.02 1.10 16 5 N -1.01 -14.06 3.27 -112.82 -0.37 -14.43 16 6 S 2.59 45.76 4.45 -107.50 -0.48 45.28 16 7 O -0.96 -18.89 14.60 -57.54 -0.84 -19.73 16 8 O -0.96 -18.77 14.49 -57.54 -0.83 -19.61 16 9 C -0.57 -10.69 5.11 37.16 0.19 -10.50 16 10 C 0.06 1.39 0.52 -155.66 -0.08 1.31 16 11 C -0.17 -3.89 7.38 37.16 0.27 -3.61 16 12 C -0.18 -4.04 7.33 37.16 0.27 -3.77 16 13 C -0.60 -16.10 8.42 -34.44 -0.29 -16.39 16 14 H 0.06 1.73 7.99 -52.49 -0.42 1.31 16 15 C 0.05 1.29 5.05 -17.82 -0.09 1.20 16 16 N -0.88 -26.00 13.70 55.43 0.76 -25.24 16 17 Si 1.04 25.20 23.47 -169.99 -3.99 21.21 16 18 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.50 6.72 56.52 0.38 -6.12 16 20 H -0.27 -6.19 5.79 56.52 0.33 -5.86 16 21 C 0.10 1.19 5.80 -3.32 -0.02 1.17 16 22 C 0.11 1.18 3.15 -26.36 -0.08 1.09 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 C -0.16 -1.45 5.71 -90.62 -0.52 -1.97 16 25 C -0.16 -1.41 9.88 -26.70 -0.26 -1.68 16 26 C -0.17 -1.48 10.19 -26.70 -0.27 -1.76 16 27 O -0.37 -4.14 8.39 -35.23 -0.30 -4.44 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.17 7.23 -51.93 -0.38 0.79 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 34 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 35 H 0.07 1.60 4.47 -51.93 -0.23 1.36 16 36 H 0.04 0.80 6.02 -51.93 -0.31 0.49 16 37 H 0.05 1.21 8.13 -51.93 -0.42 0.79 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.04 0.94 5.71 -51.93 -0.30 0.64 16 40 H 0.05 1.22 2.28 -51.93 -0.12 1.10 16 41 H 0.27 7.90 8.73 -40.82 -0.36 7.54 16 42 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.10 1.19 7.22 -51.93 -0.37 0.81 16 44 H 0.12 0.97 8.12 -51.93 -0.42 0.55 16 45 H 0.11 1.02 7.07 -51.93 -0.37 0.65 16 46 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -31.88 368.08 -9.22 -41.10 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.08 Total: 4.25 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: -0.63 Total: -33.93 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.39 Total: -39.67 kcal Atomic # 8 Polarization: -41.81 SS G_CDS: -1.97 Total: -43.78 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -3.99 Total: 21.21 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.48 Total: 45.28 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.88 -9.22 -41.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.704 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds