Wall clock time and date at job start Tue Mar 31 2020 17:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.51419 * 2 1 4 4 C 1.53301 * 109.51751 * 239.90299 * 2 1 3 5 5 N 1.47149 * 108.38688 * 187.72309 * 4 2 1 6 6 S 1.65600 * 120.97936 * 230.51030 * 5 4 2 7 7 O 1.42099 * 104.28099 * 333.93096 * 6 5 4 8 8 O 1.42095 * 104.27884 * 206.06994 * 6 5 4 9 9 C 1.81409 * 104.45067 * 89.99875 * 6 5 4 10 10 C 1.52999 * 109.47165 * 179.97438 * 9 6 5 11 11 C 1.52999 * 109.47230 * 60.00103 * 10 9 6 12 12 C 1.52999 * 109.46882 * 300.00195 * 10 9 6 13 13 C 1.50700 * 109.46753 * 180.02562 * 10 9 6 14 14 H 1.07999 * 120.00279 * 5.41238 * 13 10 9 15 15 C 1.37877 * 119.99488 * 185.40926 * 13 10 9 16 16 N 1.31515 * 119.99543 * 150.79217 * 15 13 10 17 17 Si 1.86795 * 120.00258 * 330.79080 * 15 13 10 18 18 H 1.48505 * 109.47263 * 180.02562 * 17 15 13 19 19 H 1.48496 * 109.47446 * 299.99957 * 17 15 13 20 20 H 1.48496 * 109.47142 * 60.00301 * 17 15 13 21 21 C 1.47144 * 118.03771 * 50.78100 * 5 4 2 22 22 C 1.53711 * 108.16601 * 309.16155 * 21 5 4 23 23 H 1.08998 * 109.65764 * 292.57191 * 22 21 5 24 24 C 1.53002 * 109.48859 * 172.39504 * 22 21 5 25 25 C 1.52997 * 117.50056 * 249.10856 * 24 22 21 26 26 C 1.52996 * 117.49826 * 180.44820 * 24 22 21 27 27 O 1.42960 * 109.55925 * 120.12760 * 2 1 3 28 28 H 1.08998 * 109.46460 * 180.09528 * 1 2 3 29 29 H 1.09000 * 109.47193 * 300.09729 * 1 2 3 30 30 H 1.09002 * 109.47118 * 60.10332 * 1 2 3 31 31 H 1.09001 * 109.67814 * 67.99038 * 4 2 1 32 32 H 1.09004 * 109.67773 * 307.44755 * 4 2 1 33 33 H 1.09000 * 109.46890 * 59.99866 * 9 6 5 34 34 H 1.08999 * 109.47031 * 300.00439 * 9 6 5 35 35 H 1.08997 * 109.47026 * 172.48475 * 11 10 9 36 36 H 1.09005 * 109.47027 * 292.48795 * 11 10 9 37 37 H 1.09003 * 109.46712 * 52.48039 * 11 10 9 38 38 H 1.09004 * 109.47449 * 303.42061 * 12 10 9 39 39 H 1.08992 * 109.47356 * 63.42581 * 12 10 9 40 40 H 1.09004 * 109.46916 * 183.42439 * 12 10 9 41 41 H 0.96990 * 120.00449 * 354.96457 * 16 15 13 42 42 H 1.09008 * 109.67879 * 68.94049 * 21 5 4 43 43 H 1.09004 * 109.68332 * 189.48950 * 21 5 4 44 44 H 1.09003 * 115.54360 * 34.78012 * 24 22 21 45 45 H 1.09003 * 117.49943 * 0.02562 * 25 24 22 46 46 H 1.09004 * 117.49731 * 145.01821 * 25 24 22 47 47 H 1.09002 * 117.49822 * 214.98237 * 26 24 22 48 48 H 1.09003 * 117.50337 * 0.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0422 -0.7246 -1.2501 5 7 3.5014 -0.8745 -1.1346 6 16 4.5058 -0.4164 -2.3690 7 8 3.6997 -0.5225 -3.5344 8 8 5.6604 -1.2273 -2.2006 9 6 4.8914 1.3211 -2.0178 10 6 5.8247 1.8654 -3.1011 11 6 5.1390 1.7608 -4.4648 12 6 7.1185 1.0489 -3.1168 13 6 6.1455 3.3085 -2.8089 14 1 5.7980 3.7644 -1.8936 15 6 6.8828 4.0469 -3.7102 16 7 6.7035 5.3468 -3.7978 17 14 8.1362 3.2010 -4.8067 18 1 8.7909 4.2088 -5.6792 19 1 9.1620 2.5355 -3.9641 20 1 7.4528 2.1863 -5.6484 21 6 4.0415 -1.4490 0.1078 22 6 3.4324 -0.6842 1.2939 23 1 3.8033 0.3407 1.2986 24 6 3.8233 -1.3753 2.6017 25 6 2.7159 -2.0824 3.3856 26 6 3.3019 -0.7672 3.9053 27 8 2.0086 -0.6761 1.1651 28 1 -0.3632 -1.0277 0.0017 29 1 -0.3633 0.5153 0.8891 30 1 -0.3633 0.5122 -0.8909 31 1 1.8023 -0.1392 -2.1378 32 1 1.5766 -1.7076 -1.3212 33 1 5.3803 1.3955 -1.0464 34 1 3.9696 1.9026 -2.0060 35 1 5.7447 2.2677 -5.2158 36 1 5.0277 0.7108 -4.7359 37 1 4.1560 2.2291 -4.4140 38 1 7.5759 1.0735 -2.1277 39 1 6.8939 0.0173 -3.3876 40 1 7.8077 1.4742 -3.8464 41 1 6.0029 5.7756 -3.2819 42 1 3.7738 -2.5039 0.1711 43 1 5.1264 -1.3438 0.1197 44 1 4.8165 -1.8242 2.6175 45 1 1.7088 -2.0556 2.9694 46 1 2.9806 -2.9963 3.9175 47 1 3.9520 -0.8164 4.7789 48 1 2.6801 0.1249 3.8312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:33 Heat of formation + Delta-G solvation = -100.029351 kcal Electronic energy + Delta-G solvation = -28835.274159 eV Core-core repulsion = 25018.090079 eV Total energy + Delta-G solvation = -3817.184080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79911 -38.49087 -38.34163 -37.74353 -37.06206 -35.83443 -34.14405 -33.52193 -29.78409 -29.00102 -28.18371 -27.08780 -26.62934 -24.63423 -23.25246 -22.30121 -21.54244 -21.16196 -19.94486 -19.14590 -18.76515 -17.78442 -17.29476 -17.26375 -16.87154 -16.56662 -16.25801 -15.99066 -15.45021 -15.17099 -15.06605 -14.94347 -14.66659 -14.22110 -14.06953 -13.95578 -13.75861 -13.43276 -13.32333 -13.21832 -13.15411 -12.92063 -12.81274 -12.65341 -12.54075 -12.37559 -12.28908 -12.15235 -12.05248 -11.83430 -11.81282 -11.63155 -11.33085 -11.16013 -11.01779 -10.89278 -10.77036 -10.31491 -9.82140 -8.77970 -6.35441 -0.82954 1.40736 1.43896 1.54851 1.67045 2.41666 2.53782 2.71438 2.91527 2.93043 3.04349 3.49580 3.59589 3.74141 3.79192 3.91108 3.96808 4.04965 4.13484 4.15413 4.22656 4.29630 4.32614 4.40140 4.47830 4.53353 4.55105 4.65900 4.69076 4.70344 4.80027 4.87356 4.87665 4.91181 4.92840 5.05683 5.08690 5.10470 5.27522 5.29636 5.35317 5.39275 5.41765 5.50847 5.96656 6.05383 6.18383 6.55730 7.32961 8.55933 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.003872 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.548967 B = 7230.579027 C = 7418.062094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 H 0.060 0.940 4 C 0.086 3.914 5 N -1.005 6.005 6 S 2.610 3.390 7 O -0.978 6.978 8 O -0.976 6.976 9 C -0.580 4.580 10 C 0.049 3.951 11 C -0.173 4.173 12 C -0.185 4.185 13 C -0.599 4.599 14 H 0.035 0.965 15 C 0.003 3.997 16 N -0.918 5.918 17 Si 1.060 2.940 18 H -0.301 1.301 19 H -0.262 1.262 20 H -0.248 1.248 21 C 0.092 3.908 22 C 0.107 3.893 23 H 0.063 0.937 24 C -0.164 4.164 25 C -0.158 4.158 26 C -0.171 4.171 27 O -0.372 6.372 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.261 0.739 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.132 0.868 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.818 -15.046 12.665 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.011 3.989 3 H 0.078 0.922 4 C -0.039 4.039 5 N -0.843 5.843 6 S 2.708 3.292 7 O -0.968 6.968 8 O -0.967 6.967 9 C -0.712 4.712 10 C 0.046 3.954 11 C -0.231 4.231 12 C -0.242 4.242 13 C -0.637 4.637 14 H 0.054 0.946 15 C -0.200 4.200 16 N -0.551 5.551 17 Si 0.887 3.113 18 H -0.230 1.230 19 H -0.188 1.188 20 H -0.174 1.174 21 C -0.033 4.033 22 C 0.048 3.952 23 H 0.081 0.919 24 C -0.183 4.183 25 C -0.195 4.195 26 C -0.208 4.208 27 O -0.292 6.292 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.151 0.849 34 H 0.147 0.853 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.150 0.850 45 H 0.114 0.886 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.534 -15.437 10.951 21.192 hybrid contribution -0.936 1.090 1.316 1.948 sum -10.471 -14.347 12.266 21.585 Atomic orbital electron populations 1.21745 0.90368 1.03844 1.03754 1.22598 0.96863 0.94978 0.84443 0.92163 1.22364 0.78469 1.03213 0.99875 1.57831 1.16881 1.77452 1.32157 1.05016 0.73180 0.77604 0.73368 1.93518 1.69001 1.87077 1.47250 1.93512 1.50792 1.66499 1.85848 1.30445 1.09628 1.21981 1.09137 1.18167 0.90915 0.95912 0.90391 1.22623 1.01363 1.00447 0.98619 1.22796 0.99747 0.98858 1.02796 1.21721 1.39658 0.95248 1.07075 0.94639 1.26739 0.99718 0.95274 0.98240 1.70958 1.33450 1.12562 1.38134 0.84112 0.76364 0.74685 0.76155 1.22971 1.18804 1.17382 1.22321 0.99633 0.99054 0.82283 1.21972 0.81624 0.98360 0.93275 0.91937 1.22313 1.00326 1.05575 0.90088 1.22877 0.98257 0.96183 1.02214 1.22981 1.03747 0.97549 0.96504 1.87905 1.20484 1.77503 1.43266 0.90971 0.91085 0.89388 0.88242 0.89217 0.84916 0.85259 0.92443 0.93027 0.92446 0.91187 0.92348 0.93280 0.92966 0.89236 0.88084 0.85028 0.88640 0.87685 0.87457 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.57 71.98 0.69 -1.31 16 2 C 0.07 1.37 3.40 30.70 0.10 1.47 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 4 C 0.09 1.89 5.79 86.36 0.50 2.39 16 5 N -1.01 -26.07 3.27 -510.85 -1.67 -27.74 16 6 S 2.61 87.72 4.45 -56.49 -0.25 87.47 16 7 O -0.98 -36.84 14.60 -127.65 -1.86 -38.70 16 8 O -0.98 -36.18 14.49 -127.65 -1.85 -38.03 16 9 C -0.58 -21.07 5.11 71.98 0.37 -20.70 16 10 C 0.05 2.21 0.52 -52.93 -0.03 2.18 16 11 C -0.17 -7.71 7.38 71.98 0.53 -7.18 16 12 C -0.19 -7.97 7.33 71.98 0.53 -7.44 16 13 C -0.60 -32.19 8.42 25.60 0.22 -31.98 16 14 H 0.04 2.04 7.99 -2.91 -0.02 2.02 16 15 C 0.00 0.15 5.05 84.65 0.43 0.58 16 16 N -0.92 -55.36 13.70 21.45 0.29 -55.07 16 17 Si 1.06 49.97 23.47 68.60 1.61 51.58 16 18 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 19 H -0.26 -11.38 6.72 99.48 0.67 -10.71 16 20 H -0.25 -10.65 5.79 99.48 0.58 -10.07 16 21 C 0.09 2.05 5.80 86.50 0.50 2.55 16 22 C 0.11 2.17 3.15 30.83 0.10 2.26 16 23 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 24 C -0.16 -2.72 5.71 -10.80 -0.06 -2.78 16 25 C -0.16 -2.40 9.88 30.62 0.30 -2.10 16 26 C -0.17 -2.61 10.19 30.62 0.31 -2.30 16 27 O -0.37 -7.69 8.39 -148.98 -1.25 -8.94 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 2.18 7.23 -2.39 -0.02 2.17 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.13 4.40 8.14 -2.39 -0.02 4.38 16 34 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 35 H 0.06 2.64 4.47 -2.39 -0.01 2.63 16 36 H 0.05 2.12 6.02 -2.38 -0.01 2.11 16 37 H 0.06 2.47 8.13 -2.39 -0.02 2.45 16 38 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.06 2.33 5.71 -2.39 -0.01 2.32 16 40 H 0.05 2.14 2.28 -2.39 -0.01 2.13 16 41 H 0.26 15.74 8.73 -92.72 -0.81 14.93 16 42 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.10 2.22 7.22 -2.38 -0.02 2.20 16 44 H 0.13 1.82 8.12 -2.39 -0.02 1.81 16 45 H 0.10 1.66 7.07 -2.39 -0.02 1.64 16 46 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -67.54 368.08 0.24 -67.30 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.73 Total: 26.48 kcal Atomic # 6 Polarization: -68.84 SS G_CDS: 4.49 Total: -64.35 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.37 Total: -82.81 kcal Atomic # 8 Polarization: -80.71 SS G_CDS: -4.96 Total: -85.67 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.61 Total: 51.58 kcal Atomic # 16 Polarization: 87.72 SS G_CDS: -0.25 Total: 87.47 kcal Total: -67.54 0.24 -67.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.725 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds