Wall clock time and date at job start Tue Mar 31 2020 17:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.55395 * 2 1 4 4 C 1.53296 * 109.51054 * 120.12231 * 2 1 3 5 5 N 1.47150 * 108.38576 * 67.62045 * 4 2 1 6 6 S 1.65593 * 120.98529 * 230.51356 * 5 4 2 7 7 O 1.42104 * 104.27826 * 206.07010 * 6 5 4 8 8 O 1.42094 * 104.28167 * 333.93175 * 6 5 4 9 9 C 1.81405 * 104.44862 * 90.00135 * 6 5 4 10 10 C 1.53000 * 109.47192 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.47743 * 300.00423 * 10 9 6 12 12 C 1.53008 * 109.46988 * 60.00302 * 10 9 6 13 13 C 1.50698 * 109.47398 * 179.97438 * 10 9 6 14 14 H 1.08002 * 119.99555 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00350 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00092 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00165 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47161 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47254 * 119.99493 * 17 15 13 20 20 H 1.48501 * 109.47080 * 239.99840 * 17 15 13 21 21 C 1.47158 * 118.03117 * 50.53704 * 5 4 2 22 22 C 1.53290 * 108.38592 * 309.46485 * 21 5 4 23 23 H 1.08998 * 109.55347 * 292.35430 * 22 21 5 24 24 C 1.53000 * 109.51514 * 172.22700 * 22 21 5 25 25 C 1.52998 * 117.49980 * 249.00200 * 24 22 21 26 26 C 1.52993 * 117.50399 * 180.33945 * 24 22 21 27 27 O 1.42953 * 109.51663 * 239.86706 * 2 1 3 28 28 H 1.08992 * 109.47139 * 299.87880 * 1 2 3 29 29 H 1.09002 * 109.46456 * 59.88076 * 1 2 3 30 30 H 1.08995 * 109.46864 * 179.87142 * 1 2 3 31 31 H 1.08993 * 109.68290 * 187.35098 * 4 2 1 32 32 H 1.09005 * 109.68251 * 307.89982 * 4 2 1 33 33 H 1.08996 * 109.47270 * 299.99722 * 9 6 5 34 34 H 1.09000 * 109.46997 * 60.00402 * 9 6 5 35 35 H 1.09005 * 109.47035 * 59.99317 * 11 10 9 36 36 H 1.08997 * 109.47808 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.46737 * 299.99691 * 11 10 9 38 38 H 1.08997 * 109.46750 * 59.99490 * 12 10 9 39 39 H 1.08997 * 109.47130 * 180.02562 * 12 10 9 40 40 H 1.09005 * 109.46773 * 300.00061 * 12 10 9 41 41 H 0.96998 * 119.99842 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.68099 * 189.73981 * 21 5 4 43 43 H 1.09002 * 109.71016 * 69.21056 * 21 5 4 44 44 H 1.09006 * 115.54908 * 34.66952 * 24 22 21 45 45 H 1.08996 * 117.49798 * 359.97438 * 25 24 22 46 46 H 1.08997 * 117.49761 * 145.02143 * 25 24 22 47 47 H 1.08997 * 117.50629 * 214.97915 * 26 24 22 48 48 H 1.09004 * 117.49415 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7251 1.2498 5 7 1.6959 -2.1506 1.1338 6 16 0.9287 -2.9448 2.3678 7 8 1.3074 -4.3040 2.1989 8 8 1.2978 -2.2209 3.5335 9 6 -0.8378 -2.7279 2.0166 10 6 -1.6626 -3.4263 3.0996 11 6 -1.3252 -4.9185 3.1150 12 6 -1.3350 -2.8153 4.4636 13 6 -3.1300 -3.2456 2.8082 14 1 -3.4430 -2.6887 1.9374 15 6 -4.0730 -3.7912 3.6533 16 7 -3.6919 -4.4698 4.7134 17 14 -5.8920 -3.5678 3.2916 18 1 -6.0555 -2.7716 2.0488 19 1 -6.5287 -4.8977 3.1153 20 1 -6.5379 -2.8558 4.4236 21 6 2.0522 -2.8497 -0.1111 22 6 1.5398 -2.0211 -1.2946 23 1 0.4498 -2.0283 -1.3003 24 6 2.0616 -2.6203 -2.6021 25 6 3.0987 -1.8126 -3.3850 26 6 1.6638 -1.9257 -3.9059 27 8 2.0076 -0.6764 -1.1653 28 1 -0.3633 0.5119 0.8910 29 1 -0.3632 0.5157 -0.8890 30 1 -0.3633 -1.0276 -0.0023 31 1 3.1240 -0.6146 1.3210 32 1 1.5703 -0.3040 2.1377 33 1 -1.0781 -1.6648 2.0054 34 1 -1.0712 -3.1636 1.0452 35 1 -0.2637 -5.0488 3.3260 36 1 -1.9124 -5.4160 3.8868 37 1 -1.5586 -5.3538 2.1433 38 1 -1.5754 -1.7522 4.4526 39 1 -1.9223 -3.3131 5.2352 40 1 -0.2736 -2.9456 4.6746 41 1 -4.3553 -4.8539 5.3076 42 1 1.5873 -3.8355 -0.1245 43 1 3.1352 -2.9538 -0.1773 44 1 2.1529 -3.7064 -2.6180 45 1 3.4089 -0.8542 -2.9688 46 1 3.8720 -2.3673 -3.9163 47 1 1.4938 -2.5546 -4.7798 48 1 1.0299 -1.0420 -3.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408460590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:38 Heat of formation + Delta-G solvation = -87.388668 kcal Electronic energy + Delta-G solvation = -29125.111373 eV Core-core repulsion = 25308.475433 eV Total energy + Delta-G solvation = -3816.635939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.07392 -37.02379 -36.63940 -36.32901 -35.40878 -34.67904 -32.19382 -31.69715 -29.07011 -26.93817 -25.87237 -25.76038 -25.26170 -24.12080 -22.49590 -21.54292 -19.74095 -19.31981 -18.58446 -17.54065 -16.90064 -16.18269 -15.96766 -15.84668 -15.41202 -14.99019 -14.94012 -14.66446 -14.49181 -14.23634 -13.63304 -13.17357 -13.06581 -12.72475 -12.53957 -12.28135 -12.15365 -12.07444 -12.00751 -11.65592 -11.50141 -11.44315 -11.37367 -11.17113 -11.10761 -10.95541 -10.78479 -10.72141 -10.57482 -10.45290 -10.32189 -10.24384 -10.10224 -9.99144 -9.69806 -9.51578 -8.81640 -8.60112 -8.43973 -6.06923 -4.19003 0.74287 2.96841 3.22323 3.31036 3.33241 3.44455 3.72919 4.28365 4.35025 4.37630 4.57056 4.66895 4.68442 4.81304 4.88709 4.93750 5.06765 5.17913 5.18566 5.25318 5.26528 5.34805 5.54645 5.57469 5.59074 5.63578 5.74231 5.74587 5.77600 5.84511 5.98557 6.08433 6.10978 6.16341 6.33652 6.54846 6.65552 6.75087 6.86215 6.99616 7.07524 7.26903 7.45934 7.64385 7.93823 8.05606 8.28957 8.79666 9.46712 10.94457 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004076 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.958459 B = 6867.635536 C = 7466.276963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.076 3.924 3 H 0.112 0.888 4 C 0.094 3.906 5 N -1.010 6.010 6 S 2.591 3.409 7 O -0.960 6.960 8 O -0.960 6.960 9 C -0.582 4.582 10 C 0.083 3.917 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.501 4.501 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.099 3.901 22 C 0.102 3.898 23 H 0.073 0.927 24 C -0.155 4.155 25 C -0.163 4.163 26 C -0.173 4.173 27 O -0.367 6.367 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.119 0.881 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.092 0.908 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 7.218 -13.096 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.017 3.983 3 H 0.130 0.870 4 C -0.032 4.032 5 N -0.846 5.846 6 S 2.690 3.310 7 O -0.950 6.950 8 O -0.950 6.950 9 C -0.716 4.716 10 C 0.080 3.920 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.540 4.540 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.723 3.277 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.027 4.027 22 C 0.043 3.957 23 H 0.091 0.909 24 C -0.174 4.174 25 C -0.200 4.200 26 C -0.210 4.210 27 O -0.286 6.286 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.123 0.877 46 H 0.108 0.892 47 H 0.111 0.889 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.380 6.750 -12.351 18.100 hybrid contribution -1.744 0.242 -0.383 1.802 sum 9.636 6.992 -12.734 17.432 Atomic orbital electron populations 1.22553 0.95810 1.03589 1.03305 1.22572 0.94129 0.96312 0.85268 0.87011 1.22054 1.01658 0.80464 0.99040 1.58142 1.74958 1.19514 1.31996 1.05853 0.78185 0.73817 0.73125 1.93537 1.82335 1.33818 1.85338 1.93534 1.82568 1.73428 1.45481 1.30636 1.20391 1.10034 1.10528 1.17936 0.94644 0.91239 0.88153 1.22274 0.98739 0.98441 1.02660 1.22274 0.98757 1.00028 1.01034 1.20957 0.88845 1.34295 1.09906 0.92280 1.24935 0.98994 0.94848 0.94937 1.69809 1.33473 1.35067 1.13777 0.86488 0.85021 0.77920 0.78262 1.19853 1.20926 1.20934 1.21974 1.01892 0.95856 0.82976 1.21891 0.98265 0.82718 0.92789 0.90886 1.22257 1.05714 0.98650 0.90784 1.22857 0.92033 1.02538 1.02605 1.22931 0.98801 1.02853 0.96420 1.87937 1.72328 1.25095 1.43274 0.90853 0.91480 0.91377 0.90574 0.88286 0.86381 0.86543 0.95457 0.88603 0.94472 0.94487 0.88594 0.95472 0.92771 0.88374 0.90458 0.86346 0.87652 0.89220 0.88923 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.08 8.58 37.16 0.32 -1.76 16 2 C 0.08 0.79 3.93 -26.58 -0.10 0.69 16 3 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.09 1.13 5.88 -3.53 -0.02 1.11 16 5 N -1.01 -14.47 2.79 -113.06 -0.32 -14.78 16 6 S 2.59 48.23 4.45 -107.50 -0.48 47.75 16 7 O -0.96 -20.10 14.43 -57.54 -0.83 -20.93 16 8 O -0.96 -20.00 14.43 -57.54 -0.83 -20.83 16 9 C -0.58 -11.14 4.33 37.16 0.16 -10.98 16 10 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 11 C -0.16 -3.99 7.78 37.16 0.29 -3.70 16 12 C -0.16 -3.97 7.77 37.16 0.29 -3.68 16 13 C -0.50 -12.90 8.01 -34.44 -0.28 -13.18 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.60 16 16 N -0.88 -23.85 9.35 55.43 0.52 -23.33 16 17 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C 0.10 1.24 5.77 -3.53 -0.02 1.22 16 22 C 0.10 1.14 2.75 -26.58 -0.07 1.06 16 23 H 0.07 0.83 6.25 -51.93 -0.32 0.51 16 24 C -0.16 -1.48 5.71 -90.62 -0.52 -2.00 16 25 C -0.16 -1.45 9.88 -26.70 -0.26 -1.71 16 26 C -0.17 -1.51 10.19 -26.70 -0.27 -1.78 16 27 O -0.37 -4.12 8.58 -35.23 -0.30 -4.42 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.80 4.86 -51.93 -0.25 0.55 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.20 7.22 -51.93 -0.37 0.82 16 33 H 0.12 2.04 7.50 -51.93 -0.39 1.65 16 34 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 35 H 0.03 0.63 5.46 -51.93 -0.28 0.35 16 36 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 40 H 0.03 0.63 5.47 -51.93 -0.28 0.35 16 41 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.10 1.24 7.23 -51.93 -0.38 0.86 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.12 1.01 8.12 -51.93 -0.42 0.58 16 45 H 0.11 1.03 7.07 -51.93 -0.37 0.66 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 47 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 368.07 15.07 5.55 5.55 Total: -1.00 -30.77 368.07 -10.27 -41.04 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.89 Total: 5.80 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: -0.66 Total: -31.21 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.20 Total: -38.11 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.96 Total: -46.18 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 48.23 SS G_CDS: -0.48 Total: 47.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.77 -10.27 -41.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.345 kcal (2) G-P(sol) polarization free energy of solvation -30.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds