Wall clock time and date at job start Tue Mar 31 2020 17:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.55395 * 2 1 4 4 C 1.53296 * 109.51054 * 120.12231 * 2 1 3 5 5 N 1.47150 * 108.38576 * 67.62045 * 4 2 1 6 6 S 1.65593 * 120.98529 * 230.51356 * 5 4 2 7 7 O 1.42104 * 104.27826 * 206.07010 * 6 5 4 8 8 O 1.42094 * 104.28167 * 333.93175 * 6 5 4 9 9 C 1.81405 * 104.44862 * 90.00135 * 6 5 4 10 10 C 1.53000 * 109.47192 * 179.97438 * 9 6 5 11 11 C 1.52997 * 109.47743 * 300.00423 * 10 9 6 12 12 C 1.53008 * 109.46988 * 60.00302 * 10 9 6 13 13 C 1.50698 * 109.47398 * 179.97438 * 10 9 6 14 14 H 1.08002 * 119.99555 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00350 * 180.02562 * 13 10 9 16 16 N 1.31515 * 120.00092 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00165 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47161 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47254 * 119.99493 * 17 15 13 20 20 H 1.48501 * 109.47080 * 239.99840 * 17 15 13 21 21 C 1.47158 * 118.03117 * 50.53704 * 5 4 2 22 22 C 1.53290 * 108.38592 * 309.46485 * 21 5 4 23 23 H 1.08998 * 109.55347 * 292.35430 * 22 21 5 24 24 C 1.53000 * 109.51514 * 172.22700 * 22 21 5 25 25 C 1.52998 * 117.49980 * 249.00200 * 24 22 21 26 26 C 1.52993 * 117.50399 * 180.33945 * 24 22 21 27 27 O 1.42953 * 109.51663 * 239.86706 * 2 1 3 28 28 H 1.08992 * 109.47139 * 299.87880 * 1 2 3 29 29 H 1.09002 * 109.46456 * 59.88076 * 1 2 3 30 30 H 1.08995 * 109.46864 * 179.87142 * 1 2 3 31 31 H 1.08993 * 109.68290 * 187.35098 * 4 2 1 32 32 H 1.09005 * 109.68251 * 307.89982 * 4 2 1 33 33 H 1.08996 * 109.47270 * 299.99722 * 9 6 5 34 34 H 1.09000 * 109.46997 * 60.00402 * 9 6 5 35 35 H 1.09005 * 109.47035 * 59.99317 * 11 10 9 36 36 H 1.08997 * 109.47808 * 179.97438 * 11 10 9 37 37 H 1.09006 * 109.46737 * 299.99691 * 11 10 9 38 38 H 1.08997 * 109.46750 * 59.99490 * 12 10 9 39 39 H 1.08997 * 109.47130 * 180.02562 * 12 10 9 40 40 H 1.09005 * 109.46773 * 300.00061 * 12 10 9 41 41 H 0.96998 * 119.99842 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.68099 * 189.73981 * 21 5 4 43 43 H 1.09002 * 109.71016 * 69.21056 * 21 5 4 44 44 H 1.09006 * 115.54908 * 34.66952 * 24 22 21 45 45 H 1.08996 * 117.49798 * 359.97438 * 25 24 22 46 46 H 1.08997 * 117.49761 * 145.02143 * 25 24 22 47 47 H 1.08997 * 117.50629 * 214.97915 * 26 24 22 48 48 H 1.09004 * 117.49415 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0420 -0.7251 1.2498 5 7 1.6959 -2.1506 1.1338 6 16 0.9287 -2.9448 2.3678 7 8 1.3074 -4.3040 2.1989 8 8 1.2978 -2.2209 3.5335 9 6 -0.8378 -2.7279 2.0166 10 6 -1.6626 -3.4263 3.0996 11 6 -1.3252 -4.9185 3.1150 12 6 -1.3350 -2.8153 4.4636 13 6 -3.1300 -3.2456 2.8082 14 1 -3.4430 -2.6887 1.9374 15 6 -4.0730 -3.7912 3.6533 16 7 -3.6919 -4.4698 4.7134 17 14 -5.8920 -3.5678 3.2916 18 1 -6.0555 -2.7716 2.0488 19 1 -6.5287 -4.8977 3.1153 20 1 -6.5379 -2.8558 4.4236 21 6 2.0522 -2.8497 -0.1111 22 6 1.5398 -2.0211 -1.2946 23 1 0.4498 -2.0283 -1.3003 24 6 2.0616 -2.6203 -2.6021 25 6 3.0987 -1.8126 -3.3850 26 6 1.6638 -1.9257 -3.9059 27 8 2.0076 -0.6764 -1.1653 28 1 -0.3633 0.5119 0.8910 29 1 -0.3632 0.5157 -0.8890 30 1 -0.3633 -1.0276 -0.0023 31 1 3.1240 -0.6146 1.3210 32 1 1.5703 -0.3040 2.1377 33 1 -1.0781 -1.6648 2.0054 34 1 -1.0712 -3.1636 1.0452 35 1 -0.2637 -5.0488 3.3260 36 1 -1.9124 -5.4160 3.8868 37 1 -1.5586 -5.3538 2.1433 38 1 -1.5754 -1.7522 4.4526 39 1 -1.9223 -3.3131 5.2352 40 1 -0.2736 -2.9456 4.6746 41 1 -4.3553 -4.8539 5.3076 42 1 1.5873 -3.8355 -0.1245 43 1 3.1352 -2.9538 -0.1773 44 1 2.1529 -3.7064 -2.6180 45 1 3.4089 -0.8542 -2.9688 46 1 3.8720 -2.3673 -3.9163 47 1 1.4938 -2.5546 -4.7798 48 1 1.0299 -1.0420 -3.8323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408460590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:37 Heat of formation + Delta-G solvation = -105.754782 kcal Electronic energy + Delta-G solvation = -29125.907787 eV Core-core repulsion = 25308.475433 eV Total energy + Delta-G solvation = -3817.432354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95213 -38.27444 -38.16814 -37.70686 -36.97754 -35.71960 -33.65748 -33.03717 -29.97167 -28.53089 -27.72129 -27.26425 -26.89570 -25.06570 -23.16001 -22.39518 -21.33976 -20.44880 -19.82785 -18.94981 -17.98903 -17.77807 -17.14987 -17.07593 -16.81082 -16.62769 -15.95453 -15.64128 -15.57462 -15.29432 -14.93680 -14.74446 -14.49866 -14.39514 -13.89304 -13.57689 -13.56310 -13.35679 -13.01816 -12.94299 -12.89060 -12.80986 -12.76474 -12.51193 -12.44758 -12.24147 -12.20250 -12.17303 -12.14928 -11.98241 -11.60451 -11.58974 -11.52860 -11.26434 -11.05746 -10.76939 -10.55853 -10.43386 -9.71188 -8.04159 -6.22639 -0.72726 1.42298 1.45694 1.54784 1.66736 2.43310 2.66212 2.83559 3.00104 3.12251 3.19489 3.56697 3.69061 3.82431 4.00012 4.02888 4.08349 4.11500 4.15993 4.22823 4.34356 4.40087 4.42565 4.56081 4.56319 4.73155 4.78057 4.83167 4.84537 4.90361 4.91216 4.94596 4.96140 5.04061 5.06920 5.18742 5.28113 5.33722 5.36298 5.44042 5.46378 5.53128 5.63665 5.94693 6.09248 6.23598 6.32322 6.82099 7.45887 8.96008 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.004076 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.958459 B = 6867.635536 C = 7466.276963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.080 3.920 3 H 0.140 0.860 4 C 0.084 3.916 5 N -1.002 6.002 6 S 2.606 3.394 7 O -0.987 6.987 8 O -0.985 6.985 9 C -0.582 4.582 10 C 0.071 3.929 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.019 3.981 16 N -0.908 5.908 17 Si 0.953 3.047 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.092 3.908 22 C 0.106 3.894 23 H 0.071 0.929 24 C -0.166 4.166 25 C -0.160 4.160 26 C -0.168 4.168 27 O -0.369 6.369 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.128 0.872 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.139 8.508 -15.171 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.021 3.979 3 H 0.157 0.843 4 C -0.041 4.041 5 N -0.841 5.841 6 S 2.705 3.295 7 O -0.977 6.977 8 O -0.975 6.975 9 C -0.715 4.715 10 C 0.069 3.931 11 C -0.217 4.217 12 C -0.217 4.217 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.181 4.181 16 N -0.547 5.547 17 Si 0.780 3.220 18 H -0.189 1.189 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.033 4.033 22 C 0.047 3.953 23 H 0.088 0.912 24 C -0.185 4.185 25 C -0.197 4.197 26 C -0.205 4.205 27 O -0.288 6.288 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.113 0.887 43 H 0.104 0.896 44 H 0.146 0.854 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.675 8.044 -14.427 20.227 hybrid contribution -1.767 -0.131 0.239 1.788 sum 9.908 7.912 -14.188 19.029 Atomic orbital electron populations 1.22594 0.96048 1.02937 1.04049 1.22679 0.93964 0.97195 0.84049 0.84302 1.22358 1.02561 0.79008 1.00161 1.57769 1.74079 1.20549 1.31687 1.05085 0.77878 0.73198 0.73298 1.93493 1.82577 1.35728 1.85921 1.93493 1.82789 1.73779 1.47472 1.30541 1.20583 1.10757 1.09630 1.17921 0.94880 0.91110 0.89224 1.22203 0.98428 0.99125 1.01954 1.22199 0.98445 1.00028 1.00995 1.21280 0.90027 1.34037 1.09893 0.91855 1.25660 1.02734 0.94791 0.94904 1.69948 1.34462 1.35774 1.14505 0.85575 0.80553 0.77690 0.78218 1.18930 1.21014 1.20982 1.22200 1.02480 0.96018 0.82579 1.21862 0.98127 0.82556 0.92802 0.91173 1.22311 1.06562 0.99231 0.90354 1.22877 0.92409 1.02092 1.02326 1.22977 0.98575 1.02654 0.96336 1.87952 1.72377 1.25027 1.43452 0.90424 0.90497 0.92699 0.89397 0.88357 0.84602 0.84882 0.95175 0.91011 0.94050 0.93975 0.91012 0.95185 0.92935 0.88666 0.89628 0.85422 0.88521 0.87922 0.87594 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.78 8.58 71.98 0.62 -3.16 16 2 C 0.08 1.45 3.93 30.69 0.12 1.57 16 3 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.08 1.87 5.88 86.35 0.51 2.37 16 5 N -1.00 -27.26 2.79 -511.61 -1.43 -28.69 16 6 S 2.61 95.37 4.45 -56.49 -0.25 95.11 16 7 O -0.99 -41.13 14.43 -127.65 -1.84 -42.97 16 8 O -0.99 -40.68 14.43 -127.65 -1.84 -42.53 16 9 C -0.58 -21.72 4.33 71.98 0.31 -21.41 16 10 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 11 C -0.16 -7.87 7.78 71.98 0.56 -7.31 16 12 C -0.16 -7.82 7.77 71.98 0.56 -7.26 16 13 C -0.51 -26.22 8.01 25.60 0.21 -26.02 16 14 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 15 C 0.02 0.97 5.15 84.65 0.44 1.40 16 16 N -0.91 -49.84 9.35 21.45 0.20 -49.64 16 17 Si 0.95 41.60 29.54 68.60 2.03 43.63 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 21 C 0.09 2.18 5.77 86.35 0.50 2.68 16 22 C 0.11 2.14 2.75 30.69 0.08 2.22 16 23 H 0.07 1.47 6.25 -2.39 -0.01 1.45 16 24 C -0.17 -2.81 5.71 -10.80 -0.06 -2.87 16 25 C -0.16 -2.46 9.88 30.62 0.30 -2.16 16 26 C -0.17 -2.54 10.19 30.62 0.31 -2.23 16 27 O -0.37 -7.36 8.58 -148.98 -1.28 -8.63 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.19 4.86 -2.39 -0.01 1.17 16 31 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.21 7.22 -2.38 -0.02 2.19 16 33 H 0.14 4.51 7.50 -2.39 -0.02 4.49 16 34 H 0.13 4.45 8.14 -2.39 -0.02 4.43 16 35 H 0.03 1.43 5.46 -2.38 -0.01 1.41 16 36 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 37 H 0.04 1.92 8.14 -2.38 -0.02 1.91 16 38 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 40 H 0.03 1.42 5.47 -2.38 -0.01 1.40 16 41 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 42 H 0.10 2.30 7.23 -2.39 -0.02 2.28 16 43 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.13 1.90 8.12 -2.38 -0.02 1.88 16 45 H 0.10 1.68 7.07 -2.39 -0.02 1.66 16 46 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -65.13 368.07 0.95 -64.17 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.94 Total: 28.38 kcal Atomic # 6 Polarization: -63.26 SS G_CDS: 4.43 Total: -58.83 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -1.23 Total: -78.33 kcal Atomic # 8 Polarization: -89.17 SS G_CDS: -4.96 Total: -94.13 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 95.37 SS G_CDS: -0.25 Total: 95.11 kcal Total: -65.13 0.95 -64.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408460590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.580 kcal (2) G-P(sol) polarization free energy of solvation -65.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds