Wall clock time and date at job start Tue Mar 31 2020 17:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46781 * 2 1 4 4 O 1.42894 * 109.47073 * 239.99438 * 2 1 3 5 5 C 1.53002 * 109.46671 * 119.99389 * 2 1 3 6 6 H 1.08996 * 109.70310 * 57.42422 * 5 2 1 7 7 C 1.52760 * 109.51204 * 297.30917 * 5 2 1 8 8 C 1.53042 * 109.38296 * 185.70930 * 7 5 2 9 9 H 1.09003 * 109.45766 * 301.21446 * 8 7 5 10 10 C 1.53006 * 109.44568 * 181.25355 * 8 7 5 11 11 C 1.53039 * 109.54080 * 61.24034 * 8 7 5 12 12 C 1.53191 * 109.31046 * 298.63521 * 11 8 7 13 13 N 1.46925 * 108.77741 * 54.63488 * 12 11 8 14 14 S 1.65596 * 120.63232 * 126.36745 * 13 12 11 15 15 O 1.42095 * 104.27926 * 338.67708 * 14 13 12 16 16 O 1.42105 * 104.27927 * 210.81885 * 14 13 12 17 17 C 1.81407 * 104.44824 * 94.74932 * 14 13 12 18 18 C 1.53007 * 109.46999 * 171.89464 * 17 14 13 19 19 C 1.50697 * 115.54794 * 294.30041 * 18 17 14 20 20 H 1.07992 * 120.00469 * 95.33728 * 19 18 17 21 21 C 1.37884 * 119.99803 * 275.33259 * 19 18 17 22 22 N 1.31520 * 119.99775 * 5.61188 * 21 19 18 23 23 Si 1.86798 * 120.00267 * 185.60648 * 21 19 18 24 24 H 1.48493 * 109.47548 * 180.02562 * 23 21 19 25 25 H 1.48509 * 109.47035 * 300.00420 * 23 21 19 26 26 H 1.48500 * 109.47079 * 59.99927 * 23 21 19 27 27 C 1.52995 * 117.51579 * 79.99622 * 18 17 14 28 28 C 1.52998 * 117.49569 * 148.62482 * 18 17 14 29 29 H 1.09000 * 109.47175 * 308.15387 * 1 2 3 30 30 H 1.09005 * 109.46752 * 68.15150 * 1 2 3 31 31 H 1.08999 * 109.47076 * 188.14849 * 1 2 3 32 32 H 0.96701 * 114.00084 * 310.38577 * 4 2 1 33 33 H 1.08997 * 109.56543 * 65.67089 * 7 5 2 34 34 H 1.09004 * 109.35791 * 305.61992 * 7 5 2 35 35 H 1.08997 * 109.46973 * 299.93445 * 10 8 7 36 36 H 1.08998 * 109.47067 * 59.93859 * 10 8 7 37 37 H 1.09001 * 109.46905 * 179.97438 * 10 8 7 38 38 H 1.08992 * 109.49811 * 178.68551 * 11 8 7 39 39 H 1.08998 * 109.52246 * 58.59713 * 11 8 7 40 40 H 1.09004 * 109.58791 * 294.84899 * 12 11 8 41 41 H 1.08994 * 109.70336 * 174.49212 * 12 11 8 42 42 H 1.08994 * 109.47146 * 51.89475 * 17 14 13 43 43 H 1.08999 * 109.47260 * 291.89001 * 17 14 13 44 44 H 0.96996 * 119.99555 * 174.98738 * 22 21 19 45 45 H 1.09007 * 117.50092 * 214.96715 * 27 18 17 46 46 H 1.09001 * 117.50370 * 359.97438 * 27 18 17 47 47 H 1.08994 * 117.49930 * 359.97438 * 28 18 17 48 48 H 1.09004 * 117.48962 * 144.99656 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2494 6 1 1.6415 -1.7353 1.2766 7 6 1.5871 0.0364 2.4963 8 6 2.2157 -0.6042 3.7359 9 1 1.9165 -1.6507 3.7951 10 6 1.7383 0.1340 4.9882 11 6 3.7405 -0.5143 3.6412 12 6 4.2175 -1.2833 2.4051 13 7 3.5082 -0.7692 1.2255 14 16 4.3480 -0.2475 -0.1030 15 8 5.6467 0.0429 0.3951 16 8 3.5298 0.7745 -0.6557 17 6 4.3958 -1.6892 -1.2031 18 6 4.9734 -1.2773 -2.5587 19 6 4.1377 -0.3073 -3.3535 20 1 4.3398 0.7521 -3.2970 21 6 3.1151 -0.7723 -4.1531 22 7 2.7971 -2.0484 -4.1380 23 14 2.1814 0.4100 -5.2575 24 1 1.1387 -0.3335 -6.0092 25 1 1.5385 1.4600 -4.4271 26 1 3.1245 1.0437 -6.2136 27 6 6.4944 -1.1572 -2.6720 28 6 5.7678 -2.3281 -3.3368 29 1 -0.3633 0.6349 0.8081 30 1 -0.3633 0.3825 -0.9539 31 1 -0.3633 -1.0173 0.1457 32 1 1.5978 -1.5373 -1.3165 33 1 0.5009 -0.0071 2.5754 34 1 1.9057 1.0762 2.4229 35 1 2.0378 1.1804 4.9294 36 1 0.6523 0.0701 5.0559 37 1 2.1854 -0.3222 5.8715 38 1 4.1868 -0.9497 4.5351 39 1 4.0392 0.5306 3.5573 40 1 4.0002 -2.3443 2.5285 41 1 5.2906 -1.1426 2.2763 42 1 3.3857 -2.0749 -1.3406 43 1 5.0233 -2.4630 -0.7609 44 1 2.0320 -2.3635 -4.6442 45 1 6.8907 -0.3767 -3.3216 46 1 7.0840 -1.3713 -1.7805 47 1 5.8794 -3.3127 -2.8827 48 1 5.6860 -2.3178 -4.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408461394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:08 Heat of formation + Delta-G solvation = -82.038173 kcal Electronic energy + Delta-G solvation = -30112.659417 eV Core-core repulsion = 26296.255492 eV Total energy + Delta-G solvation = -3816.403924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.34314 -37.13746 -36.57283 -35.49909 -34.75435 -33.44480 -32.02838 -31.78360 -29.08756 -27.85313 -27.40413 -25.20310 -24.05759 -22.70602 -21.14917 -21.05776 -20.10917 -19.34485 -18.20109 -16.83094 -16.43736 -15.94501 -15.59118 -15.03589 -14.77368 -14.50526 -14.36308 -14.23811 -14.00144 -13.79783 -13.50047 -13.44103 -13.14578 -12.90399 -12.23671 -12.03671 -11.90345 -11.73722 -11.66183 -11.61348 -11.43749 -11.15771 -11.05845 -10.97915 -10.79685 -10.77494 -10.74058 -10.54938 -10.41047 -10.35427 -10.32629 -9.92562 -9.55501 -9.40582 -9.08997 -8.77662 -8.63995 -8.33976 -7.88376 -5.90808 -3.94528 1.33642 3.44161 3.45383 3.49218 3.54931 4.56288 4.58004 4.62939 4.70114 4.89758 4.94667 5.01943 5.22879 5.30226 5.32343 5.36766 5.40068 5.41726 5.50345 5.55431 5.64192 5.66751 5.70390 5.77410 5.80771 5.86332 5.93081 5.97596 6.07399 6.09627 6.12396 6.21633 6.37120 6.37647 6.39789 6.44479 6.59883 6.76717 6.81360 6.87659 7.06421 7.14020 7.46485 7.51961 8.04192 8.41571 8.42485 9.05549 9.72889 11.18172 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.005704 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.797161 B = 4907.331175 C = 6014.118846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.144 0.856 4 O -0.508 6.508 5 C 0.129 3.871 6 H 0.066 0.934 7 C -0.121 4.121 8 C -0.090 4.090 9 H 0.069 0.931 10 C -0.146 4.146 11 C -0.126 4.126 12 C 0.117 3.883 13 N -1.003 6.003 14 S 2.614 3.386 15 O -0.999 6.999 16 O -0.922 6.922 17 C -0.541 4.541 18 C 0.054 3.946 19 C -0.478 4.478 20 H 0.064 0.936 21 C 0.094 3.906 22 N -0.884 5.884 23 Si 0.886 3.114 24 H -0.292 1.292 25 H -0.272 1.272 26 H -0.281 1.281 27 C -0.224 4.224 28 C -0.141 4.141 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.357 0.643 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.256 0.744 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -1.121 15.221 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.009 3.991 3 H 0.161 0.839 4 O -0.312 6.312 5 C 0.022 3.978 6 H 0.084 0.916 7 C -0.160 4.160 8 C -0.109 4.109 9 H 0.087 0.913 10 C -0.203 4.203 11 C -0.165 4.165 12 C -0.009 4.009 13 N -0.839 5.839 14 S 2.715 3.285 15 O -0.989 6.989 16 O -0.912 6.912 17 C -0.674 4.674 18 C 0.052 3.948 19 C -0.516 4.516 20 H 0.082 0.918 21 C -0.109 4.109 22 N -0.521 5.521 23 Si 0.714 3.286 24 H -0.218 1.218 25 H -0.197 1.197 26 H -0.207 1.207 27 C -0.261 4.261 28 C -0.181 4.181 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.205 0.795 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.162 0.838 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.697 0.157 14.957 15.408 hybrid contribution -1.192 -0.857 -0.498 1.550 sum -4.889 -0.700 14.460 15.280 Atomic orbital electron populations 1.22557 0.96991 1.01641 1.02791 1.22893 0.92333 1.00571 0.83344 0.83851 1.87408 1.64890 1.35055 1.43889 1.21670 0.79990 0.99381 0.96776 0.91635 1.21884 1.00098 1.00315 0.93671 1.21080 0.95335 0.99838 0.94613 0.91268 1.21830 1.00787 1.00542 0.97169 1.21920 0.95455 1.01479 0.97629 1.21334 0.97353 0.97141 0.85085 1.58117 1.14020 1.81592 1.30168 1.04987 0.72315 0.78131 0.73109 1.93435 1.41492 1.84530 1.79475 1.93532 1.65332 1.54424 1.77888 1.30166 1.10383 1.16097 1.10749 1.18302 0.87386 0.98667 0.90456 1.20263 1.15067 0.91890 1.24351 0.91793 1.24689 0.96062 0.94466 0.95694 1.69981 1.26649 1.13395 1.42094 0.86761 0.79534 0.81667 0.80617 1.21841 1.19733 1.20717 1.23257 0.97450 1.02777 1.02622 1.22506 1.04622 0.91683 0.99251 0.92150 0.91283 0.93004 0.79530 0.90951 0.91249 0.92701 0.92816 0.92850 0.91267 0.91465 0.92264 0.88958 0.83807 0.90298 0.93403 0.89729 0.91070 0.91870 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 8.93 37.16 0.33 -1.98 16 2 C 0.07 1.09 2.25 -26.73 -0.06 1.03 16 3 H 0.14 2.64 5.92 -52.13 -0.31 2.33 16 4 O -0.51 -9.66 6.68 -60.19 -0.40 -10.07 16 5 C 0.13 1.75 2.71 -67.82 -0.18 1.56 16 6 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 7 C -0.12 -1.37 4.18 -26.83 -0.11 -1.48 16 8 C -0.09 -0.91 2.68 -90.58 -0.24 -1.15 16 9 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 10 C -0.15 -1.24 9.19 37.16 0.34 -0.90 16 11 C -0.13 -1.41 5.36 -26.61 -0.14 -1.55 16 12 C 0.12 1.55 6.45 -3.71 -0.02 1.53 16 13 N -1.00 -15.70 3.22 -106.71 -0.34 -16.04 16 14 S 2.61 53.34 4.70 -107.50 -0.51 52.84 16 15 O -1.00 -22.57 16.46 -57.54 -0.95 -23.52 16 16 O -0.92 -20.97 11.00 -67.44 -0.74 -21.71 16 17 C -0.54 -11.43 5.29 37.16 0.20 -11.23 16 18 C 0.05 1.32 1.33 -155.66 -0.21 1.11 16 19 C -0.48 -12.83 6.94 -34.44 -0.24 -13.07 16 20 H 0.06 1.82 7.82 -52.49 -0.41 1.41 16 21 C 0.09 2.48 5.23 -17.81 -0.09 2.38 16 22 N -0.88 -23.28 12.92 55.43 0.72 -22.56 16 23 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C -0.22 -5.09 9.95 -26.73 -0.27 -5.36 16 28 C -0.14 -3.29 9.43 -26.73 -0.25 -3.55 16 29 H 0.06 0.65 7.07 -51.93 -0.37 0.28 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.36 6.08 8.17 45.56 0.37 6.45 16 33 H 0.07 0.70 7.00 -51.93 -0.36 0.33 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.33 6.74 -51.93 -0.35 0.98 16 42 H 0.14 3.00 5.43 -51.93 -0.28 2.72 16 43 H 0.08 1.51 8.09 -51.92 -0.42 1.09 16 44 H 0.26 6.57 8.32 -40.82 -0.34 6.23 16 45 H 0.08 1.90 8.14 -51.93 -0.42 1.47 16 46 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 372.47 15.07 5.61 5.61 Total: -1.00 -31.18 372.47 -10.19 -41.37 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.61 Total: 10.24 kcal Atomic # 6 Polarization: -31.69 SS G_CDS: -0.95 Total: -32.64 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.37 Total: -38.61 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -2.09 Total: -55.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 53.34 SS G_CDS: -0.51 Total: 52.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.18 -10.19 -41.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.669 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds