Wall clock time and date at job start Tue Mar 31 2020 17:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46781 * 2 1 4 4 O 1.42894 * 109.47073 * 239.99438 * 2 1 3 5 5 C 1.53002 * 109.46671 * 119.99389 * 2 1 3 6 6 H 1.08996 * 109.70310 * 57.42422 * 5 2 1 7 7 C 1.52760 * 109.51204 * 297.30917 * 5 2 1 8 8 C 1.53042 * 109.38296 * 185.70930 * 7 5 2 9 9 H 1.09003 * 109.45766 * 301.21446 * 8 7 5 10 10 C 1.53006 * 109.44568 * 181.25355 * 8 7 5 11 11 C 1.53039 * 109.54080 * 61.24034 * 8 7 5 12 12 C 1.53191 * 109.31046 * 298.63521 * 11 8 7 13 13 N 1.46925 * 108.77741 * 54.63488 * 12 11 8 14 14 S 1.65596 * 120.63232 * 126.36745 * 13 12 11 15 15 O 1.42095 * 104.27926 * 338.67708 * 14 13 12 16 16 O 1.42105 * 104.27927 * 210.81885 * 14 13 12 17 17 C 1.81407 * 104.44824 * 94.74932 * 14 13 12 18 18 C 1.53007 * 109.46999 * 171.89464 * 17 14 13 19 19 C 1.50697 * 115.54794 * 294.30041 * 18 17 14 20 20 H 1.07992 * 120.00469 * 95.33728 * 19 18 17 21 21 C 1.37884 * 119.99803 * 275.33259 * 19 18 17 22 22 N 1.31520 * 119.99775 * 5.61188 * 21 19 18 23 23 Si 1.86798 * 120.00267 * 185.60648 * 21 19 18 24 24 H 1.48493 * 109.47548 * 180.02562 * 23 21 19 25 25 H 1.48509 * 109.47035 * 300.00420 * 23 21 19 26 26 H 1.48500 * 109.47079 * 59.99927 * 23 21 19 27 27 C 1.52995 * 117.51579 * 79.99622 * 18 17 14 28 28 C 1.52998 * 117.49569 * 148.62482 * 18 17 14 29 29 H 1.09000 * 109.47175 * 308.15387 * 1 2 3 30 30 H 1.09005 * 109.46752 * 68.15150 * 1 2 3 31 31 H 1.08999 * 109.47076 * 188.14849 * 1 2 3 32 32 H 0.96701 * 114.00084 * 310.38577 * 4 2 1 33 33 H 1.08997 * 109.56543 * 65.67089 * 7 5 2 34 34 H 1.09004 * 109.35791 * 305.61992 * 7 5 2 35 35 H 1.08997 * 109.46973 * 299.93445 * 10 8 7 36 36 H 1.08998 * 109.47067 * 59.93859 * 10 8 7 37 37 H 1.09001 * 109.46905 * 179.97438 * 10 8 7 38 38 H 1.08992 * 109.49811 * 178.68551 * 11 8 7 39 39 H 1.08998 * 109.52246 * 58.59713 * 11 8 7 40 40 H 1.09004 * 109.58791 * 294.84899 * 12 11 8 41 41 H 1.08994 * 109.70336 * 174.49212 * 12 11 8 42 42 H 1.08994 * 109.47146 * 51.89475 * 17 14 13 43 43 H 1.08999 * 109.47260 * 291.89001 * 17 14 13 44 44 H 0.96996 * 119.99555 * 174.98738 * 22 21 19 45 45 H 1.09007 * 117.50092 * 214.96715 * 27 18 17 46 46 H 1.09001 * 117.50370 * 359.97438 * 27 18 17 47 47 H 1.08994 * 117.49930 * 359.97438 * 28 18 17 48 48 H 1.09004 * 117.48962 * 144.99656 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2494 6 1 1.6415 -1.7353 1.2766 7 6 1.5871 0.0364 2.4963 8 6 2.2157 -0.6042 3.7359 9 1 1.9165 -1.6507 3.7951 10 6 1.7383 0.1340 4.9882 11 6 3.7405 -0.5143 3.6412 12 6 4.2175 -1.2833 2.4051 13 7 3.5082 -0.7692 1.2255 14 16 4.3480 -0.2475 -0.1030 15 8 5.6467 0.0429 0.3951 16 8 3.5298 0.7745 -0.6557 17 6 4.3958 -1.6892 -1.2031 18 6 4.9734 -1.2773 -2.5587 19 6 4.1377 -0.3073 -3.3535 20 1 4.3398 0.7521 -3.2970 21 6 3.1151 -0.7723 -4.1531 22 7 2.7971 -2.0484 -4.1380 23 14 2.1814 0.4100 -5.2575 24 1 1.1387 -0.3335 -6.0092 25 1 1.5385 1.4600 -4.4271 26 1 3.1245 1.0437 -6.2136 27 6 6.4944 -1.1572 -2.6720 28 6 5.7678 -2.3281 -3.3368 29 1 -0.3633 0.6349 0.8081 30 1 -0.3633 0.3825 -0.9539 31 1 -0.3633 -1.0173 0.1457 32 1 1.5978 -1.5373 -1.3165 33 1 0.5009 -0.0071 2.5754 34 1 1.9057 1.0762 2.4229 35 1 2.0378 1.1804 4.9294 36 1 0.6523 0.0701 5.0559 37 1 2.1854 -0.3222 5.8715 38 1 4.1868 -0.9497 4.5351 39 1 4.0392 0.5306 3.5573 40 1 4.0002 -2.3443 2.5285 41 1 5.2906 -1.1426 2.2763 42 1 3.3857 -2.0749 -1.3406 43 1 5.0233 -2.4630 -0.7609 44 1 2.0320 -2.3635 -4.6442 45 1 6.8907 -0.3767 -3.3216 46 1 7.0840 -1.3713 -1.7805 47 1 5.8794 -3.3127 -2.8827 48 1 5.6860 -2.3178 -4.4237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408461394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:07 Heat of formation + Delta-G solvation = -101.905268 kcal Electronic energy + Delta-G solvation = -30113.520919 eV Core-core repulsion = 26296.255492 eV Total energy + Delta-G solvation = -3817.265426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43416 -38.58416 -38.33163 -36.99474 -36.41126 -34.47394 -33.83840 -33.14867 -30.17514 -29.49976 -28.28990 -27.22072 -25.09677 -23.68361 -22.96787 -22.28266 -21.25637 -20.95802 -19.66393 -18.26056 -18.21588 -17.41992 -16.86946 -16.51803 -16.31520 -16.21302 -15.62581 -15.53767 -15.28176 -14.97533 -14.81423 -14.65342 -14.50843 -14.15951 -13.60812 -13.50901 -13.16463 -13.00460 -12.95577 -12.90884 -12.77258 -12.68703 -12.59413 -12.51458 -12.33471 -12.30772 -12.13670 -12.02164 -11.81215 -11.74360 -11.51146 -11.40248 -11.23030 -10.79338 -10.70313 -10.37335 -10.29126 -10.00443 -9.57057 -7.95193 -6.01436 -0.23197 1.45610 1.46507 1.55933 2.11548 2.56066 3.23704 3.34190 3.45259 3.48305 3.61647 3.66722 3.92778 4.05039 4.10899 4.20768 4.26743 4.35347 4.41407 4.49022 4.54521 4.60007 4.64289 4.70155 4.71783 4.79836 4.90646 4.92035 4.94151 4.95843 4.98715 5.03392 5.09311 5.17205 5.26664 5.27390 5.31511 5.35840 5.48815 5.55346 5.60900 5.62223 5.73462 5.93704 5.96739 6.43362 6.95041 7.15750 7.65935 9.12915 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016249 B = 0.005704 C = 0.004655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.797161 B = 4907.331175 C = 6014.118846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.064 3.936 3 H 0.110 0.890 4 O -0.535 6.535 5 C 0.130 3.870 6 H 0.092 0.908 7 C -0.119 4.119 8 C -0.086 4.086 9 H 0.086 0.914 10 C -0.143 4.143 11 C -0.125 4.125 12 C 0.106 3.894 13 N -0.998 5.998 14 S 2.625 3.375 15 O -1.027 7.027 16 O -0.953 6.953 17 C -0.540 4.540 18 C 0.031 3.969 19 C -0.490 4.490 20 H 0.035 0.965 21 C 0.072 3.928 22 N -0.889 5.889 23 Si 0.922 3.078 24 H -0.281 1.281 25 H -0.284 1.284 26 H -0.285 1.285 27 C -0.221 4.221 28 C -0.137 4.137 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.362 0.638 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.259 0.741 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.082 0.918 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -2.745 17.457 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.003 3.997 3 H 0.128 0.872 4 O -0.341 6.341 5 C 0.024 3.976 6 H 0.110 0.890 7 C -0.158 4.158 8 C -0.105 4.105 9 H 0.104 0.896 10 C -0.200 4.200 11 C -0.164 4.164 12 C -0.018 4.018 13 N -0.836 5.836 14 S 2.726 3.274 15 O -1.018 7.018 16 O -0.943 6.943 17 C -0.672 4.672 18 C 0.029 3.971 19 C -0.528 4.528 20 H 0.053 0.947 21 C -0.130 4.130 22 N -0.527 5.527 23 Si 0.750 3.250 24 H -0.206 1.206 25 H -0.210 1.210 26 H -0.211 1.211 27 C -0.258 4.258 28 C -0.176 4.176 29 H 0.100 0.900 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.210 0.790 33 H 0.115 0.885 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.164 0.836 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.064 -1.470 17.182 17.973 hybrid contribution -0.758 -0.316 -1.157 1.419 sum -5.822 -1.786 16.026 17.144 Atomic orbital electron populations 1.22446 0.94464 1.03486 1.02634 1.22840 0.94380 0.98933 0.83533 0.87225 1.87373 1.65719 1.35514 1.45521 1.21812 0.78410 1.00778 0.96575 0.89037 1.21920 1.01678 0.99065 0.93167 1.21086 0.94074 1.00845 0.94483 0.89613 1.21796 1.01597 0.99905 0.96707 1.21949 0.96766 1.00205 0.97489 1.21632 0.96426 0.99052 0.84723 1.57734 1.14987 1.81609 1.29303 1.04364 0.71738 0.77765 0.73562 1.93390 1.43327 1.85029 1.80049 1.93531 1.65743 1.55885 1.79152 1.30081 1.10659 1.17039 1.09410 1.18403 0.87869 0.98891 0.91954 1.20209 1.16037 0.91049 1.25472 0.94671 1.24979 0.96415 0.95407 0.96246 1.69997 1.26803 1.13598 1.42302 0.86212 0.78887 0.80414 0.79455 1.20588 1.20992 1.21088 1.23295 0.96988 1.02451 1.03066 1.22452 1.04394 0.92550 0.98249 0.89985 0.93198 0.90659 0.79018 0.88467 0.93003 0.93528 0.91658 0.91673 0.88712 0.93365 0.89402 0.90534 0.83560 0.88391 0.93201 0.90230 0.89414 0.89950 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.93 71.98 0.64 -3.44 16 2 C 0.06 1.98 2.25 30.60 0.07 2.05 16 3 H 0.11 4.18 5.92 -5.52 -0.03 4.15 16 4 O -0.54 -20.49 6.68 -125.12 -0.84 -21.33 16 5 C 0.13 3.26 2.71 44.83 0.12 3.38 16 6 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.12 -2.39 4.18 30.53 0.13 -2.26 16 8 C -0.09 -1.43 2.68 -10.76 -0.03 -1.46 16 9 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 10 C -0.14 -1.93 9.19 71.98 0.66 -1.26 16 11 C -0.13 -2.49 5.36 30.67 0.16 -2.33 16 12 C 0.11 2.61 6.45 86.36 0.56 3.17 16 13 N -1.00 -30.02 3.22 -491.52 -1.59 -31.61 16 14 S 2.63 108.21 4.70 -56.49 -0.27 107.95 16 15 O -1.03 -47.12 16.46 -127.65 -2.10 -49.22 16 16 O -0.95 -45.01 11.00 -118.19 -1.30 -46.31 16 17 C -0.54 -22.56 5.29 71.98 0.38 -22.18 16 18 C 0.03 1.51 1.33 -52.93 -0.07 1.44 16 19 C -0.49 -26.93 6.94 25.60 0.18 -26.75 16 20 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 21 C 0.07 3.82 5.23 84.66 0.44 4.26 16 22 N -0.89 -46.63 12.92 21.45 0.28 -46.35 16 23 Si 0.92 44.60 29.54 68.60 2.03 46.63 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.28 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 27 C -0.22 -10.06 9.95 30.59 0.30 -9.76 16 28 C -0.14 -6.35 9.43 30.59 0.29 -6.06 16 29 H 0.08 1.56 7.07 -2.39 -0.02 1.54 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.07 1.43 8.13 -2.39 -0.02 1.41 16 32 H 0.36 12.22 8.17 -74.06 -0.60 11.62 16 33 H 0.10 1.48 7.00 -2.39 -0.02 1.46 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 2.12 6.74 -2.39 -0.02 2.11 16 42 H 0.15 6.03 5.43 -2.39 -0.01 6.02 16 43 H 0.10 3.61 8.09 -2.39 -0.02 3.59 16 44 H 0.26 13.08 8.32 -92.71 -0.77 12.31 16 45 H 0.08 3.64 8.14 -2.38 -0.02 3.62 16 46 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 48 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -68.50 372.47 0.37 -68.13 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.32 Total: 33.32 kcal Atomic # 6 Polarization: -65.05 SS G_CDS: 3.84 Total: -61.21 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -1.31 Total: -77.96 kcal Atomic # 8 Polarization: -112.63 SS G_CDS: -4.24 Total: -116.86 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 108.21 SS G_CDS: -0.27 Total: 107.95 kcal Total: -68.50 0.37 -68.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408461394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.777 kcal (2) G-P(sol) polarization free energy of solvation -68.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds