Wall clock time and date at job start Tue Mar 31 2020 16:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99934 * 2 1 4 4 N 1.46502 * 109.46856 * 125.00190 * 3 2 1 5 5 C 1.46500 * 119.99579 * 274.99239 * 4 3 2 6 6 C 1.50696 * 109.47500 * 275.00114 * 5 4 3 7 7 H 1.08001 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00453 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99889 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47310 * 90.00335 * 10 8 6 12 12 H 1.48507 * 109.47267 * 209.99825 * 10 8 6 13 13 H 1.48497 * 109.47175 * 330.00244 * 10 8 6 14 14 S 1.65602 * 120.00124 * 95.00126 * 4 3 2 15 15 O 1.42097 * 104.27592 * 333.92215 * 14 4 3 16 16 O 1.42103 * 104.27471 * 206.07079 * 14 4 3 17 17 C 1.81396 * 104.45278 * 89.99625 * 14 4 3 18 18 C 1.52995 * 109.47208 * 179.97438 * 17 14 4 19 19 O 1.42902 * 109.47230 * 179.97438 * 18 17 14 20 20 C 1.42898 * 114.00186 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47319 * 180.02562 * 20 19 18 22 22 C 1.54267 * 110.03373 * 292.91285 * 21 20 19 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.69205 * 21 20 19 26 26 H 1.07996 * 120.00293 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99967 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99856 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47285 * 4.99866 * 3 2 1 30 30 H 1.09000 * 109.47052 * 244.99561 * 3 2 1 31 31 H 1.08999 * 109.46969 * 35.01070 * 5 4 3 32 32 H 1.09004 * 109.46571 * 155.00247 * 5 4 3 33 33 H 0.96997 * 120.00716 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47195 * 59.99612 * 17 14 4 35 35 H 1.09000 * 109.47299 * 299.99937 * 17 14 4 36 36 H 1.09001 * 109.47081 * 60.00157 * 18 17 14 37 37 H 1.08999 * 109.47384 * 299.99850 * 18 17 14 38 38 H 1.09002 * 109.47259 * 300.00293 * 20 19 18 39 39 H 1.09001 * 109.47074 * 60.00315 * 20 19 18 40 40 H 1.09004 * 110.01939 * 54.29674 * 21 20 19 41 41 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 42 42 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 43 43 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 44 44 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 45 45 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 46 46 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 47 47 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 48 48 H 1.09004 * 110.03196 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5284 1.7621 2.4522 6 6 2.5991 3.2646 2.5449 7 1 2.9547 3.8413 1.7039 8 6 2.2099 3.9029 3.7033 9 7 2.2711 5.2141 3.7841 10 14 1.5955 2.9053 5.1582 11 1 2.7410 2.5497 6.0337 12 1 0.6135 3.7086 5.9300 13 1 0.9436 1.6645 4.6677 14 16 4.5713 0.8758 0.9173 15 8 4.5314 -0.0150 -0.1890 16 8 4.9847 0.4305 2.2019 17 6 5.4291 2.4099 0.4688 18 6 6.9136 2.1168 0.2426 19 8 7.5892 3.3252 -0.1114 20 6 8.9894 3.1612 -0.3451 21 6 9.6065 4.5118 -0.7140 22 6 9.0701 4.9821 -2.0818 23 6 10.2891 5.6637 -2.7531 24 6 11.4695 4.7605 -2.3173 25 6 11.1315 4.3714 -0.8633 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.4983 1.4371 2.5982 32 1 3.1612 1.3204 3.2220 33 1 1.9970 5.6633 4.5989 34 1 5.3211 3.1356 1.2748 35 1 4.9950 2.8150 -0.4453 36 1 7.0219 1.3910 -0.5634 37 1 7.3474 1.7120 1.1569 38 1 9.4661 2.7787 0.5574 39 1 9.1412 2.4566 -1.1628 40 1 9.3729 5.2506 0.0527 41 1 8.7358 4.1301 -2.6738 42 1 8.2581 5.6969 -1.9480 43 1 10.4195 6.6782 -2.3764 44 1 10.1849 5.6665 -3.8380 45 1 12.4078 5.3140 -2.3558 46 1 11.5255 3.8724 -2.9468 47 1 11.6380 5.0426 -0.1698 48 1 11.4321 3.3411 -0.6726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416484295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:37 Heat of formation + Delta-G solvation = -112.134215 kcal Electronic energy + Delta-G solvation = -26904.774738 eV Core-core repulsion = 23087.065751 eV Total energy + Delta-G solvation = -3817.708987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.00179 -37.26269 -36.77477 -36.49212 -35.49430 -33.22396 -32.04013 -32.00983 -29.85557 -28.85064 -28.12218 -25.05269 -24.57118 -23.31659 -21.79392 -20.88281 -19.82315 -19.77081 -18.32809 -17.34328 -16.98466 -16.74695 -16.42237 -15.94365 -15.70314 -15.54206 -15.16675 -14.79019 -14.25392 -14.19660 -13.87746 -13.63003 -13.47249 -13.09824 -12.71076 -12.61003 -12.21529 -11.98522 -11.83375 -11.67233 -11.60199 -11.52085 -11.40407 -11.36512 -11.29764 -11.21350 -11.02803 -10.91792 -10.79240 -10.74057 -10.63130 -10.52127 -10.29616 -10.21034 -9.65933 -9.63825 -9.13370 -8.67858 -8.17532 -6.19049 -4.21016 0.68397 2.52206 3.19659 3.27057 3.33622 3.36433 3.59281 4.26066 4.33289 4.40725 4.41970 4.58622 4.61491 4.80503 4.95464 5.05705 5.13426 5.15953 5.20038 5.23657 5.25634 5.27697 5.38459 5.40620 5.45880 5.53051 5.59332 5.60256 5.67797 5.68372 5.81848 5.88420 6.03294 6.07952 6.10318 6.12403 6.21399 6.25034 6.33746 6.84999 6.91259 6.94899 7.10504 7.14073 7.33362 7.50765 8.35717 8.81989 9.41291 10.93044 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003110 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.679087 B = 9000.222031 C =10225.138548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.160 4.160 3 C 0.155 3.845 4 N -0.972 5.972 5 C 0.212 3.788 6 C -0.550 4.550 7 H 0.081 0.919 8 C 0.078 3.922 9 N -0.892 5.892 10 Si 0.869 3.131 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.616 3.384 15 O -0.970 6.970 16 O -0.954 6.954 17 C -0.635 4.635 18 C 0.079 3.921 19 O -0.373 6.373 20 C 0.063 3.937 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.266 0.734 34 H 0.154 0.846 35 H 0.134 0.866 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.795 -3.759 -11.475 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.180 4.180 3 C 0.029 3.971 4 N -0.809 5.809 5 C 0.089 3.911 6 C -0.589 4.589 7 H 0.099 0.901 8 C -0.126 4.126 9 N -0.529 5.529 10 Si 0.696 3.304 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.707 3.293 15 O -0.960 6.960 16 O -0.945 6.945 17 C -0.762 4.762 18 C 0.001 3.999 19 O -0.292 6.292 20 C -0.014 4.014 21 C -0.111 4.111 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.111 0.889 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.172 0.828 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.086 0.914 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.021 -4.260 -11.249 17.005 hybrid contribution -0.321 0.230 0.818 0.909 sum 11.700 -4.029 -10.431 16.184 Atomic orbital electron populations 1.23805 0.95824 1.01643 1.01469 1.23452 0.96268 0.99381 0.98865 1.20249 0.93222 0.95683 0.87906 1.57134 1.24055 1.82725 1.16993 1.19648 0.96775 0.96050 0.78612 1.21477 1.45841 0.89899 1.01702 0.90126 1.24846 0.94659 0.94761 0.98333 1.69888 1.47198 1.07760 1.28046 0.86943 0.79534 0.80745 0.83217 1.19640 1.20999 1.18646 1.04695 0.74340 0.76163 0.74091 1.93544 1.86226 1.60627 1.55588 1.93562 1.82001 1.79159 1.39750 1.30936 1.05181 1.26109 1.14000 1.22009 0.90156 0.88019 0.99706 1.87987 1.20267 1.30944 1.89966 1.22731 0.81844 0.97420 0.99425 1.21780 0.94236 0.96410 0.98719 1.22391 0.97507 1.00431 0.94943 1.22541 0.94937 0.98950 1.00075 1.22358 0.98274 0.99541 0.96047 1.22140 0.94556 1.01725 0.97199 0.88867 0.88314 0.87342 0.89170 0.90422 0.94132 0.93508 0.92395 0.82779 0.84807 0.92414 0.92039 0.93169 0.93176 0.89920 0.91495 0.91164 0.91527 0.91670 0.91772 0.91694 0.91373 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 14.32 29.02 0.42 -2.20 16 2 C -0.16 -2.50 9.84 -36.03 -0.35 -2.86 16 3 C 0.16 2.59 5.70 -5.19 -0.03 2.56 16 4 N -0.97 -18.91 2.68 -116.95 -0.31 -19.22 16 5 C 0.21 4.86 4.48 -5.20 -0.02 4.84 16 6 C -0.55 -14.35 9.94 -34.44 -0.34 -14.70 16 7 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 8 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 10 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 14 S 2.62 47.86 5.37 -107.50 -0.58 47.29 16 15 O -0.97 -17.97 16.99 -57.54 -0.98 -18.95 16 16 O -0.95 -20.31 16.53 -57.54 -0.95 -21.26 16 17 C -0.64 -10.35 6.55 37.16 0.24 -10.11 16 18 C 0.08 1.16 5.95 37.16 0.22 1.38 16 19 O -0.37 -5.59 10.18 -35.23 -0.36 -5.94 16 20 C 0.06 0.73 4.98 37.16 0.19 0.91 16 21 C -0.09 -0.97 3.19 -89.50 -0.29 -1.25 16 22 C -0.12 -1.17 6.22 -25.03 -0.16 -1.33 16 23 C -0.13 -1.05 6.91 -24.70 -0.17 -1.22 16 24 C -0.12 -0.94 6.83 -25.08 -0.17 -1.11 16 25 C -0.12 -0.98 6.46 -25.61 -0.17 -1.14 16 26 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.10 1.31 7.84 -52.48 -0.41 0.90 16 28 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 29 H 0.09 1.51 7.76 -51.93 -0.40 1.10 16 30 H 0.08 1.12 7.61 -51.93 -0.40 0.73 16 31 H 0.04 0.92 7.17 -51.93 -0.37 0.55 16 32 H 0.05 1.11 6.24 -51.93 -0.32 0.79 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.15 2.80 8.14 -51.93 -0.42 2.38 16 35 H 0.13 1.96 8.14 -51.92 -0.42 1.54 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.51 8.02 -51.93 -0.42 0.10 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -31.71 401.01 -10.39 -42.10 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.63 Total: 3.30 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -0.73 Total: -24.19 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.46 Total: -44.39 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -2.29 Total: -46.15 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 47.86 SS G_CDS: -0.58 Total: 47.29 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.71 -10.39 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416484295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.034 kcal (2) G-P(sol) polarization free energy of solvation -31.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds