Wall clock time and date at job start Tue Mar 31 2020 16:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99934 * 2 1 4 4 N 1.46502 * 109.46856 * 125.00190 * 3 2 1 5 5 C 1.46500 * 119.99579 * 274.99239 * 4 3 2 6 6 C 1.50696 * 109.47500 * 275.00114 * 5 4 3 7 7 H 1.08001 * 119.99802 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00182 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00453 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99889 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47310 * 90.00335 * 10 8 6 12 12 H 1.48507 * 109.47267 * 209.99825 * 10 8 6 13 13 H 1.48497 * 109.47175 * 330.00244 * 10 8 6 14 14 S 1.65602 * 120.00124 * 95.00126 * 4 3 2 15 15 O 1.42097 * 104.27592 * 333.92215 * 14 4 3 16 16 O 1.42103 * 104.27471 * 206.07079 * 14 4 3 17 17 C 1.81396 * 104.45278 * 89.99625 * 14 4 3 18 18 C 1.52995 * 109.47208 * 179.97438 * 17 14 4 19 19 O 1.42902 * 109.47230 * 179.97438 * 18 17 14 20 20 C 1.42898 * 114.00186 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47319 * 180.02562 * 20 19 18 22 22 C 1.54267 * 110.03373 * 292.91285 * 21 20 19 23 23 C 1.54968 * 104.16137 * 217.13581 * 22 21 20 24 24 C 1.54884 * 102.77441 * 37.88396 * 23 22 21 25 25 C 1.53874 * 110.03593 * 175.69205 * 21 20 19 26 26 H 1.07996 * 120.00293 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.99967 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.99856 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47285 * 4.99866 * 3 2 1 30 30 H 1.09000 * 109.47052 * 244.99561 * 3 2 1 31 31 H 1.08999 * 109.46969 * 35.01070 * 5 4 3 32 32 H 1.09004 * 109.46571 * 155.00247 * 5 4 3 33 33 H 0.96997 * 120.00716 * 179.97438 * 9 8 6 34 34 H 1.08998 * 109.47195 * 59.99612 * 17 14 4 35 35 H 1.09000 * 109.47299 * 299.99937 * 17 14 4 36 36 H 1.09001 * 109.47081 * 60.00157 * 18 17 14 37 37 H 1.08999 * 109.47384 * 299.99850 * 18 17 14 38 38 H 1.09002 * 109.47259 * 300.00293 * 20 19 18 39 39 H 1.09001 * 109.47074 * 60.00315 * 20 19 18 40 40 H 1.09004 * 110.01939 * 54.29674 * 21 20 19 41 41 H 1.09001 * 110.48609 * 335.77840 * 22 21 20 42 42 H 1.08999 * 110.49311 * 98.42344 * 22 21 20 43 43 H 1.08997 * 110.72048 * 279.57487 * 23 22 21 44 44 H 1.08993 * 110.92252 * 156.29196 * 23 22 21 45 45 H 1.09009 * 110.48779 * 203.40596 * 24 23 22 46 46 H 1.09001 * 110.59973 * 80.82109 * 24 23 22 47 47 H 1.09003 * 110.03243 * 238.56963 * 25 21 20 48 48 H 1.09004 * 110.03196 * 359.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1314 5 6 2.5284 1.7621 2.4522 6 6 2.5991 3.2646 2.5449 7 1 2.9547 3.8413 1.7039 8 6 2.2099 3.9029 3.7033 9 7 2.2711 5.2141 3.7841 10 14 1.5955 2.9053 5.1582 11 1 2.7410 2.5497 6.0337 12 1 0.6135 3.7086 5.9300 13 1 0.9436 1.6645 4.6677 14 16 4.5713 0.8758 0.9173 15 8 4.5314 -0.0150 -0.1890 16 8 4.9847 0.4305 2.2019 17 6 5.4291 2.4099 0.4688 18 6 6.9136 2.1168 0.2426 19 8 7.5892 3.3252 -0.1114 20 6 8.9894 3.1612 -0.3451 21 6 9.6065 4.5118 -0.7140 22 6 9.0701 4.9821 -2.0818 23 6 10.2891 5.6637 -2.7531 24 6 11.4695 4.7605 -2.3173 25 6 11.1315 4.3714 -0.8633 26 1 -0.5400 -0.9352 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9353 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6213 1.4026 -0.9314 31 1 1.4983 1.4371 2.5982 32 1 3.1612 1.3204 3.2220 33 1 1.9970 5.6633 4.5989 34 1 5.3211 3.1356 1.2748 35 1 4.9950 2.8150 -0.4453 36 1 7.0219 1.3910 -0.5634 37 1 7.3474 1.7120 1.1569 38 1 9.4661 2.7787 0.5574 39 1 9.1412 2.4566 -1.1628 40 1 9.3729 5.2506 0.0527 41 1 8.7358 4.1301 -2.6738 42 1 8.2581 5.6969 -1.9480 43 1 10.4195 6.6782 -2.3764 44 1 10.1849 5.6665 -3.8380 45 1 12.4078 5.3140 -2.3558 46 1 11.5255 3.8724 -2.9468 47 1 11.6380 5.0426 -0.1698 48 1 11.4321 3.3411 -0.6726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416484295.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:37 Heat of formation + Delta-G solvation = -131.933955 kcal Electronic energy + Delta-G solvation = -26905.633319 eV Core-core repulsion = 23087.065751 eV Total energy + Delta-G solvation = -3818.567568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.88721 -38.28539 -38.20048 -38.01367 -37.04062 -34.96319 -33.66934 -33.16685 -30.75602 -29.91136 -29.55352 -26.53541 -25.45688 -24.60822 -23.54404 -21.55826 -21.00439 -20.59944 -19.79574 -18.99406 -18.68450 -18.01620 -17.73382 -17.21340 -16.94405 -16.49565 -16.28144 -16.10532 -15.88497 -15.37304 -15.14916 -14.72327 -14.58953 -14.37587 -14.20089 -13.85353 -13.67459 -13.53381 -13.33403 -13.18987 -13.04221 -12.89173 -12.64395 -12.49359 -12.39832 -12.24420 -12.07850 -11.99158 -11.92338 -11.90891 -11.82372 -11.68879 -11.62578 -11.49042 -11.34260 -10.77660 -10.68528 -10.31164 -9.79080 -8.29442 -6.34595 -0.78170 1.29027 1.38573 1.41000 1.48886 1.81822 2.35024 2.45753 2.92194 3.05893 3.15935 3.50251 3.67436 3.70547 3.73128 3.87059 3.89321 4.05985 4.15748 4.27865 4.36738 4.41456 4.42933 4.46836 4.55620 4.64950 4.67692 4.72543 4.80153 4.84419 4.89490 4.89719 4.97558 5.04246 5.08681 5.11081 5.23948 5.30613 5.33501 5.44245 5.46376 5.47463 5.64302 5.77618 5.96432 6.10131 6.28810 6.71040 7.30782 8.85493 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012242 B = 0.003110 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.679087 B = 9000.222031 C =10225.138548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C 0.147 3.853 4 N -0.979 5.979 5 C 0.221 3.779 6 C -0.544 4.544 7 H 0.056 0.944 8 C 0.023 3.977 9 N -0.937 5.937 10 Si 0.923 3.077 11 H -0.271 1.271 12 H -0.280 1.280 13 H -0.242 1.242 14 S 2.628 3.372 15 O -0.969 6.969 16 O -0.986 6.986 17 C -0.624 4.624 18 C 0.071 3.929 19 O -0.395 6.395 20 C 0.054 3.946 21 C -0.096 4.096 22 C -0.119 4.119 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.115 4.115 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.149 0.851 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.202 -5.210 -12.331 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.205 4.205 3 C 0.022 3.978 4 N -0.815 5.815 5 C 0.096 3.904 6 C -0.583 4.583 7 H 0.075 0.925 8 C -0.177 4.177 9 N -0.577 5.577 10 Si 0.747 3.253 11 H -0.196 1.196 12 H -0.206 1.206 13 H -0.166 1.166 14 S 2.722 3.278 15 O -0.960 6.960 16 O -0.976 6.976 17 C -0.753 4.753 18 C -0.007 4.007 19 O -0.315 6.315 20 C -0.022 4.022 21 C -0.114 4.114 22 C -0.157 4.157 23 C -0.163 4.163 24 C -0.159 4.159 25 C -0.153 4.153 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.167 0.833 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 12.413 -5.749 -12.126 18.280 hybrid contribution -0.426 0.725 0.966 1.281 sum 11.987 -5.024 -11.159 17.131 Atomic orbital electron populations 1.24051 0.95259 1.02963 0.98511 1.23379 0.96944 0.98585 1.01590 1.20476 0.93239 0.96405 0.87676 1.57103 1.25134 1.82696 1.16605 1.19350 0.97054 0.93640 0.80319 1.21719 1.44263 0.91600 1.00695 0.92543 1.25639 0.95235 0.95599 1.01214 1.70014 1.49159 1.09492 1.28986 0.86066 0.79172 0.80088 0.79984 1.19614 1.20559 1.16564 1.04247 0.73851 0.76360 0.73367 1.93536 1.86173 1.61127 1.55143 1.93517 1.82405 1.80241 1.41482 1.30740 1.06802 1.23904 1.13857 1.22142 0.88872 0.88602 1.01096 1.87954 1.22159 1.31238 1.90168 1.23001 0.80170 0.98525 1.00502 1.21827 0.95913 0.95449 0.98252 1.22400 0.97928 1.00157 0.95166 1.22537 0.94312 0.98961 1.00455 1.22364 0.98359 0.99747 0.95406 1.22140 0.92622 1.02545 0.97995 0.86645 0.87844 0.87567 0.89604 0.88491 0.93477 0.94205 0.92356 0.84966 0.83258 0.89964 0.91437 0.92304 0.91503 0.91605 0.91647 0.92898 0.91517 0.90785 0.90460 0.91040 0.90871 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.27 14.32 67.78 0.97 -3.30 16 2 C -0.19 -5.48 9.84 25.65 0.25 -5.23 16 3 C 0.15 4.75 5.70 85.63 0.49 5.24 16 4 N -0.98 -37.60 2.68 -523.92 -1.41 -39.01 16 5 C 0.22 10.01 4.48 85.63 0.38 10.40 16 6 C -0.54 -28.72 9.94 25.60 0.25 -28.47 16 7 H 0.06 3.18 8.06 -2.91 -0.02 3.16 16 8 C 0.02 1.25 5.47 84.65 0.46 1.71 16 9 N -0.94 -55.67 13.96 21.45 0.30 -55.37 16 10 Si 0.92 42.24 27.47 68.60 1.88 44.13 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 14 S 2.63 94.81 5.37 -56.49 -0.30 94.50 16 15 O -0.97 -34.63 16.99 -127.65 -2.17 -36.80 16 16 O -0.99 -41.84 16.53 -127.65 -2.11 -43.95 16 17 C -0.62 -20.28 6.55 71.98 0.47 -19.81 16 18 C 0.07 2.03 5.95 71.98 0.43 2.45 16 19 O -0.40 -11.73 10.18 -148.98 -1.52 -13.25 16 20 C 0.05 1.20 4.98 71.98 0.36 1.56 16 21 C -0.10 -1.95 3.19 -10.07 -0.03 -1.98 16 22 C -0.12 -2.38 6.22 31.70 0.20 -2.18 16 23 C -0.13 -1.91 6.91 31.91 0.22 -1.69 16 24 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 25 C -0.12 -1.71 6.46 31.32 0.20 -1.51 16 26 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 27 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 28 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.09 2.81 7.76 -2.39 -0.02 2.80 16 30 H 0.10 2.69 7.61 -2.39 -0.02 2.67 16 31 H 0.05 2.07 7.17 -2.39 -0.02 2.06 16 32 H 0.04 1.88 6.24 -2.38 -0.01 1.86 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.13 4.97 8.14 -2.39 -0.02 4.95 16 35 H 0.15 4.31 8.14 -2.39 -0.02 4.29 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.25 8.02 -2.39 -0.02 1.23 16 40 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 41 H 0.06 1.31 7.77 -2.39 -0.02 1.29 16 42 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.07 0.98 7.67 -2.38 -0.02 0.96 16 Total: -1.00 -67.72 401.01 0.40 -67.32 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.84 Total: 26.59 kcal Atomic # 6 Polarization: -49.04 SS G_CDS: 4.87 Total: -44.17 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.11 Total: -94.38 kcal Atomic # 8 Polarization: -88.20 SS G_CDS: -5.79 Total: -93.99 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.13 kcal Atomic # 16 Polarization: 94.81 SS G_CDS: -0.30 Total: 94.50 kcal Total: -67.72 0.40 -67.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416484295.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.614 kcal (2) G-P(sol) polarization free energy of solvation -67.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds