Wall clock time and date at job start Tue Mar 31 2020 17:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00204 * 2 1 4 4 C 1.53002 * 109.46786 * 54.74955 * 3 2 1 5 5 C 1.53002 * 109.47015 * 174.74551 * 3 2 1 6 6 H 1.09001 * 109.47241 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47014 * 60.00543 * 5 3 2 8 8 N 1.46498 * 109.47124 * 300.00030 * 5 3 2 9 9 S 1.65596 * 119.99681 * 214.99797 * 8 5 3 10 10 O 1.42097 * 104.28315 * 308.92966 * 9 8 5 11 11 O 1.42104 * 104.27515 * 181.07616 * 9 8 5 12 12 C 1.81400 * 104.45087 * 65.00725 * 9 8 5 13 13 C 1.52997 * 109.47330 * 187.96116 * 12 9 8 14 14 C 1.50705 * 115.54765 * 306.37034 * 13 12 9 15 15 H 1.07999 * 120.00279 * 115.70757 * 14 13 12 16 16 C 1.37879 * 119.99912 * 295.43360 * 14 13 12 17 17 N 1.31516 * 120.00134 * 171.54452 * 16 14 13 18 18 Si 1.86797 * 119.99766 * 351.54317 * 16 14 13 19 19 H 1.48497 * 109.47237 * 92.36413 * 18 16 14 20 20 H 1.48507 * 109.46981 * 212.36312 * 18 16 14 21 21 H 1.48506 * 109.47355 * 332.36270 * 18 16 14 22 22 C 1.52995 * 117.50291 * 92.03631 * 13 12 9 23 23 C 1.52999 * 117.50146 * 160.70052 * 13 12 9 24 24 C 1.52997 * 109.47151 * 294.74922 * 3 2 1 25 25 C 1.52992 * 117.50273 * 127.73603 * 24 3 2 26 26 C 1.52992 * 117.50155 * 59.07140 * 24 3 2 27 27 H 1.09007 * 109.47102 * 314.72825 * 1 2 3 28 28 H 1.09007 * 109.47389 * 74.72290 * 1 2 3 29 29 H 1.08996 * 109.47503 * 194.72560 * 1 2 3 30 30 H 1.09008 * 109.46815 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46717 * 299.99417 * 4 3 2 32 32 H 1.08998 * 109.47229 * 59.99816 * 4 3 2 33 33 H 1.09008 * 109.46815 * 299.99408 * 7 5 3 34 34 H 1.08998 * 109.47229 * 59.99781 * 7 5 3 35 35 H 1.08995 * 109.47166 * 180.02562 * 7 5 3 36 36 H 0.96996 * 120.00153 * 35.00897 * 8 5 3 37 37 H 1.08991 * 109.47184 * 67.95482 * 12 9 8 38 38 H 1.09010 * 109.46658 * 307.95342 * 12 9 8 39 39 H 0.96993 * 120.00014 * 179.97438 * 17 16 14 40 40 H 1.08999 * 117.50160 * 215.00346 * 22 13 12 41 41 H 1.09004 * 117.49889 * 0.02655 * 22 13 12 42 42 H 1.09001 * 117.49575 * 359.97438 * 23 13 12 43 43 H 1.09001 * 117.49795 * 144.96832 * 23 13 12 44 44 H 1.09004 * 115.54688 * 273.40505 * 24 3 2 45 45 H 1.09007 * 117.49621 * 359.97438 * 25 24 3 46 46 H 1.08997 * 117.50662 * 145.01737 * 25 24 3 47 47 H 1.09004 * 117.50531 * 214.97885 * 26 24 3 48 48 H 1.08999 * 117.50062 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4571 2.1099 1.1780 5 6 3.5299 1.1870 0.1321 6 1 3.9734 2.1827 0.1317 7 6 4.0831 0.3825 -1.0459 8 7 3.8594 0.5057 1.3865 9 16 5.2127 0.9425 2.2351 10 8 6.2568 0.9084 1.2718 11 8 5.2209 0.0684 3.3555 12 6 4.8867 2.6478 2.7606 13 6 6.1504 3.2381 3.3894 14 6 6.7575 2.4313 4.5082 15 1 7.7414 2.0014 4.3918 16 6 6.0591 2.2466 5.6826 17 7 6.5105 1.4101 6.5916 18 14 4.4718 3.1846 5.9827 19 1 3.3201 2.3698 5.5190 20 1 4.3284 3.4634 7.4343 21 1 4.5050 4.4663 5.2334 22 6 7.1057 4.0026 2.4710 23 6 6.2464 4.7621 3.4848 24 6 1.6660 2.0170 -1.3100 25 6 1.0411 3.4102 -1.2142 26 6 0.1849 2.2144 -1.6387 27 1 -0.3634 0.7233 0.7302 28 1 -0.3634 0.2708 -0.9914 29 1 -0.3634 -0.9938 0.2612 30 1 1.9001 3.1059 1.1778 31 1 0.3744 2.1943 1.0839 32 1 1.7023 1.6030 2.1113 33 1 3.6397 -0.6133 -1.0459 34 1 3.8379 0.8895 -1.9792 35 1 5.1656 0.2978 -0.9516 36 1 3.2851 -0.2012 1.7198 37 1 4.0794 2.6543 3.4928 38 1 4.5980 3.2455 1.8959 39 1 6.0194 1.2805 7.4179 40 1 8.1733 3.9221 2.6759 41 1 6.8337 4.0855 1.4186 42 1 5.4094 5.3442 3.0992 43 1 6.7482 5.1812 4.3570 44 1 2.3449 1.8260 -2.1411 45 1 0.8748 3.8197 -0.2178 46 1 1.3084 4.1357 -1.9824 47 1 -0.1107 2.1538 -2.6861 48 1 -0.5444 1.8370 -0.9219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416577827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:35 Heat of formation + Delta-G solvation = -47.572508 kcal Electronic energy + Delta-G solvation = -29184.461168 eV Core-core repulsion = 25369.551787 eV Total energy + Delta-G solvation = -3814.909381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.44680 -37.06262 -36.31981 -36.07624 -35.60614 -34.96490 -32.18823 -30.59263 -29.66794 -28.53425 -27.29036 -25.48880 -24.33977 -22.68107 -22.37270 -21.61818 -19.85035 -19.36483 -18.63107 -17.28148 -16.74702 -16.59554 -16.38191 -15.80996 -15.24046 -15.13491 -14.94403 -14.71859 -14.26481 -13.85249 -13.78137 -13.45546 -13.11933 -13.06799 -12.57723 -12.43188 -12.40109 -12.33459 -12.22639 -11.85306 -11.61565 -11.35225 -11.24463 -11.08460 -11.05558 -11.03816 -10.80581 -10.76738 -10.67892 -10.49909 -10.43691 -10.33092 -10.08693 -9.62131 -9.53382 -9.26942 -9.05076 -8.72940 -8.38915 -6.16382 -4.23363 1.05889 3.16801 3.25140 3.30091 3.35722 3.48473 3.74363 4.30468 4.35004 4.43334 4.60863 4.62366 4.70727 4.74539 4.76470 4.94358 5.02050 5.11606 5.13096 5.15085 5.25332 5.30588 5.40310 5.44366 5.48747 5.52155 5.55179 5.62534 5.64890 5.74413 5.79791 5.89915 5.94911 6.01782 6.04764 6.07380 6.26701 6.31594 6.46803 6.47219 6.61379 6.86842 7.04919 7.09207 7.37533 7.60809 8.40082 8.88976 9.45618 10.95304 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004596 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.904991 B = 6091.203238 C = 6197.762876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.365 6.365 3 C 0.141 3.859 4 C -0.192 4.192 5 C 0.173 3.827 6 H 0.091 0.909 7 C -0.170 4.170 8 N -1.125 6.125 9 S 2.620 3.380 10 O -0.962 6.962 11 O -0.930 6.930 12 C -0.585 4.585 13 C 0.006 3.994 14 C -0.526 4.526 15 H 0.086 0.914 16 C 0.101 3.899 17 N -0.868 5.868 18 Si 0.851 3.149 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.245 1.245 22 C -0.176 4.176 23 C -0.180 4.180 24 C -0.179 4.179 25 C -0.180 4.180 26 C -0.187 4.187 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.417 0.583 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.268 0.732 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 3.002 -16.070 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.283 6.283 3 C 0.100 3.900 4 C -0.250 4.250 5 C 0.065 3.935 6 H 0.109 0.891 7 C -0.229 4.229 8 N -0.882 5.882 9 S 2.714 3.286 10 O -0.952 6.952 11 O -0.920 6.920 12 C -0.715 4.715 13 C 0.003 3.997 14 C -0.563 4.563 15 H 0.104 0.896 16 C -0.106 4.106 17 N -0.502 5.502 18 Si 0.678 3.322 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.169 1.169 22 C -0.213 4.213 23 C -0.219 4.219 24 C -0.198 4.198 25 C -0.217 4.217 26 C -0.224 4.224 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.078 0.922 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.940 2.303 -15.780 21.181 hybrid contribution -1.946 1.040 0.459 2.254 sum -15.886 3.343 -15.321 22.322 Atomic orbital electron populations 1.23244 0.82040 1.02396 1.00856 1.87967 1.19155 1.26407 1.94796 1.21191 0.93431 0.83325 0.92044 1.22640 1.01570 1.01428 0.99314 1.20570 0.91511 0.96199 0.85217 0.89133 1.22316 1.02738 1.01222 0.96575 1.56150 1.48036 1.50228 1.33793 1.04824 0.72867 0.77280 0.73593 1.93495 1.53643 1.86891 1.61212 1.93621 1.84676 1.61885 1.51853 1.30320 1.08131 1.24241 1.08818 1.18765 0.90981 0.91641 0.98269 1.20376 1.05356 1.33389 0.97147 0.89565 1.24857 0.96858 0.93257 0.95600 1.69872 1.39570 1.32336 1.08377 0.87234 0.84412 0.82377 0.78198 1.20107 1.21159 1.16860 1.22914 0.97856 1.06008 0.94482 1.23057 1.01598 0.96189 1.01079 1.23019 0.97030 0.99694 1.00061 1.23193 1.04047 0.90947 1.03525 1.23337 0.93617 1.02818 1.02630 0.93351 0.92559 0.90256 0.90626 0.91609 0.90736 0.91272 0.91994 0.90631 0.74916 0.86676 0.87624 0.92193 0.88968 0.90419 0.91201 0.89158 0.86488 0.87905 0.88607 0.88645 0.87664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.12 101.05 0.92 1.01 16 2 O -0.36 -4.16 9.17 -35.23 -0.32 -4.48 16 3 C 0.14 1.53 0.53 -90.62 -0.05 1.48 16 4 C -0.19 -2.01 6.58 37.16 0.24 -1.77 16 5 C 0.17 2.24 2.04 -67.93 -0.14 2.10 16 6 H 0.09 1.08 7.02 -51.93 -0.36 0.72 16 7 C -0.17 -2.13 9.13 37.16 0.34 -1.79 16 8 N -1.13 -17.62 4.58 -4.89 -0.02 -17.64 16 9 S 2.62 54.64 4.85 -107.50 -0.52 54.12 16 10 O -0.96 -21.55 17.11 -57.54 -0.98 -22.53 16 11 O -0.93 -23.76 17.50 -57.54 -1.01 -24.76 16 12 C -0.58 -11.58 5.58 37.16 0.21 -11.37 16 13 C 0.01 0.14 0.94 -155.66 -0.15 -0.01 16 14 C -0.53 -14.71 8.15 -34.44 -0.28 -14.99 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 16 C 0.10 2.91 5.46 -17.82 -0.10 2.81 16 17 N -0.87 -26.62 13.96 55.43 0.77 -25.84 16 18 Si 0.85 20.66 25.07 -169.99 -4.26 16.40 16 19 H -0.27 -6.43 7.00 56.52 0.40 -6.03 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.25 -5.44 5.72 56.52 0.32 -5.11 16 22 C -0.18 -3.54 9.92 -26.70 -0.26 -3.81 16 23 C -0.18 -3.66 8.01 -26.69 -0.21 -3.87 16 24 C -0.18 -1.60 5.15 -90.63 -0.47 -2.07 16 25 C -0.18 -1.39 9.56 -26.70 -0.26 -1.64 16 26 C -0.19 -1.37 8.05 -26.70 -0.21 -1.59 16 27 H 0.05 0.38 5.29 -51.92 -0.27 0.11 16 28 H 0.06 0.41 5.25 -51.92 -0.27 0.14 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.73 7.02 -51.92 -0.36 0.37 16 31 H 0.07 0.57 5.20 -51.93 -0.27 0.30 16 32 H 0.07 0.88 7.60 -51.93 -0.39 0.48 16 33 H 0.07 0.88 7.68 -51.92 -0.40 0.48 16 34 H 0.06 0.62 6.15 -51.93 -0.32 0.30 16 35 H 0.07 1.09 7.42 -51.93 -0.39 0.70 16 36 H 0.42 6.15 8.36 -34.47 -0.29 5.86 16 37 H 0.12 2.28 5.20 -51.93 -0.27 2.01 16 38 H 0.11 1.62 7.20 -51.92 -0.37 1.25 16 39 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 44 H 0.12 1.02 6.08 -51.93 -0.32 0.70 16 45 H 0.10 0.79 5.84 -51.93 -0.30 0.48 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.11 0.72 4.68 -51.93 -0.24 0.48 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -34.49 369.61 -8.63 -43.12 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -7.44 Total: 11.55 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: -0.41 Total: -35.50 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.75 Total: -43.48 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -2.31 Total: -51.78 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.26 Total: 16.40 kcal Atomic # 16 Polarization: 54.64 SS G_CDS: -0.52 Total: 54.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.49 -8.63 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416577827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.452 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds