Wall clock time and date at job start Tue Mar 31 2020 17:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00204 * 2 1 4 4 C 1.53002 * 109.46786 * 54.74955 * 3 2 1 5 5 C 1.53002 * 109.47015 * 174.74551 * 3 2 1 6 6 H 1.09001 * 109.47241 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.47014 * 60.00543 * 5 3 2 8 8 N 1.46498 * 109.47124 * 300.00030 * 5 3 2 9 9 S 1.65596 * 119.99681 * 214.99797 * 8 5 3 10 10 O 1.42097 * 104.28315 * 308.92966 * 9 8 5 11 11 O 1.42104 * 104.27515 * 181.07616 * 9 8 5 12 12 C 1.81400 * 104.45087 * 65.00725 * 9 8 5 13 13 C 1.52997 * 109.47330 * 187.96116 * 12 9 8 14 14 C 1.50705 * 115.54765 * 306.37034 * 13 12 9 15 15 H 1.07999 * 120.00279 * 115.70757 * 14 13 12 16 16 C 1.37879 * 119.99912 * 295.43360 * 14 13 12 17 17 N 1.31516 * 120.00134 * 171.54452 * 16 14 13 18 18 Si 1.86797 * 119.99766 * 351.54317 * 16 14 13 19 19 H 1.48497 * 109.47237 * 92.36413 * 18 16 14 20 20 H 1.48507 * 109.46981 * 212.36312 * 18 16 14 21 21 H 1.48506 * 109.47355 * 332.36270 * 18 16 14 22 22 C 1.52995 * 117.50291 * 92.03631 * 13 12 9 23 23 C 1.52999 * 117.50146 * 160.70052 * 13 12 9 24 24 C 1.52997 * 109.47151 * 294.74922 * 3 2 1 25 25 C 1.52992 * 117.50273 * 127.73603 * 24 3 2 26 26 C 1.52992 * 117.50155 * 59.07140 * 24 3 2 27 27 H 1.09007 * 109.47102 * 314.72825 * 1 2 3 28 28 H 1.09007 * 109.47389 * 74.72290 * 1 2 3 29 29 H 1.08996 * 109.47503 * 194.72560 * 1 2 3 30 30 H 1.09008 * 109.46815 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46717 * 299.99417 * 4 3 2 32 32 H 1.08998 * 109.47229 * 59.99816 * 4 3 2 33 33 H 1.09008 * 109.46815 * 299.99408 * 7 5 3 34 34 H 1.08998 * 109.47229 * 59.99781 * 7 5 3 35 35 H 1.08995 * 109.47166 * 180.02562 * 7 5 3 36 36 H 0.96996 * 120.00153 * 35.00897 * 8 5 3 37 37 H 1.08991 * 109.47184 * 67.95482 * 12 9 8 38 38 H 1.09010 * 109.46658 * 307.95342 * 12 9 8 39 39 H 0.96993 * 120.00014 * 179.97438 * 17 16 14 40 40 H 1.08999 * 117.50160 * 215.00346 * 22 13 12 41 41 H 1.09004 * 117.49889 * 0.02655 * 22 13 12 42 42 H 1.09001 * 117.49575 * 359.97438 * 23 13 12 43 43 H 1.09001 * 117.49795 * 144.96832 * 23 13 12 44 44 H 1.09004 * 115.54688 * 273.40505 * 24 3 2 45 45 H 1.09007 * 117.49621 * 359.97438 * 25 24 3 46 46 H 1.08997 * 117.50662 * 145.01737 * 25 24 3 47 47 H 1.09004 * 117.50531 * 214.97885 * 26 24 3 48 48 H 1.08999 * 117.50062 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.4571 2.1099 1.1780 5 6 3.5299 1.1870 0.1321 6 1 3.9734 2.1827 0.1317 7 6 4.0831 0.3825 -1.0459 8 7 3.8594 0.5057 1.3865 9 16 5.2127 0.9425 2.2351 10 8 6.2568 0.9084 1.2718 11 8 5.2209 0.0684 3.3555 12 6 4.8867 2.6478 2.7606 13 6 6.1504 3.2381 3.3894 14 6 6.7575 2.4313 4.5082 15 1 7.7414 2.0014 4.3918 16 6 6.0591 2.2466 5.6826 17 7 6.5105 1.4101 6.5916 18 14 4.4718 3.1846 5.9827 19 1 3.3201 2.3698 5.5190 20 1 4.3284 3.4634 7.4343 21 1 4.5050 4.4663 5.2334 22 6 7.1057 4.0026 2.4710 23 6 6.2464 4.7621 3.4848 24 6 1.6660 2.0170 -1.3100 25 6 1.0411 3.4102 -1.2142 26 6 0.1849 2.2144 -1.6387 27 1 -0.3634 0.7233 0.7302 28 1 -0.3634 0.2708 -0.9914 29 1 -0.3634 -0.9938 0.2612 30 1 1.9001 3.1059 1.1778 31 1 0.3744 2.1943 1.0839 32 1 1.7023 1.6030 2.1113 33 1 3.6397 -0.6133 -1.0459 34 1 3.8379 0.8895 -1.9792 35 1 5.1656 0.2978 -0.9516 36 1 3.2851 -0.2012 1.7198 37 1 4.0794 2.6543 3.4928 38 1 4.5980 3.2455 1.8959 39 1 6.0194 1.2805 7.4179 40 1 8.1733 3.9221 2.6759 41 1 6.8337 4.0855 1.4186 42 1 5.4094 5.3442 3.0992 43 1 6.7482 5.1812 4.3570 44 1 2.3449 1.8260 -2.1411 45 1 0.8748 3.8197 -0.2178 46 1 1.3084 4.1357 -1.9824 47 1 -0.1107 2.1538 -2.6861 48 1 -0.5444 1.8370 -0.9219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416577827.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:34 Heat of formation + Delta-G solvation = -74.150455 kcal Electronic energy + Delta-G solvation = -29185.613674 eV Core-core repulsion = 25369.551787 eV Total energy + Delta-G solvation = -3816.061887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18502 -38.77257 -37.96347 -36.93350 -36.71280 -36.55137 -34.31690 -31.56183 -30.61160 -30.11416 -27.98263 -27.56851 -25.06775 -23.40264 -23.21336 -23.12100 -21.39112 -20.46806 -20.10992 -18.67501 -18.45049 -17.78308 -17.27462 -17.07091 -16.73073 -16.51609 -16.15651 -15.66666 -15.45334 -15.42792 -14.95082 -14.59655 -14.46247 -14.41864 -14.10013 -13.91165 -13.38545 -13.08752 -13.02473 -12.95995 -12.88668 -12.85707 -12.70859 -12.68315 -12.65336 -12.35404 -12.16546 -12.13170 -11.89011 -11.77991 -11.59074 -11.52647 -11.19980 -10.96905 -10.91390 -10.67129 -10.45555 -10.21154 -10.12161 -8.32417 -6.44117 -0.54665 1.26750 1.34920 1.48744 2.02188 2.34527 2.65881 2.92934 2.98311 3.11163 3.20969 3.45802 3.64133 3.65721 3.82397 3.86897 4.04414 4.10936 4.13229 4.24056 4.36118 4.37324 4.43058 4.45008 4.53805 4.58254 4.63861 4.66993 4.79002 4.83480 4.89481 4.93690 4.96464 4.97883 5.00602 5.06222 5.21676 5.23795 5.25777 5.30581 5.39490 5.48228 5.52808 5.62106 6.13293 6.23316 6.34995 6.66279 7.28677 8.84282 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.004596 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.904991 B = 6091.203238 C = 6197.762876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.388 6.388 3 C 0.146 3.854 4 C -0.199 4.199 5 C 0.160 3.840 6 H 0.107 0.893 7 C -0.169 4.169 8 N -1.111 6.111 9 S 2.618 3.382 10 O -0.989 6.989 11 O -0.994 6.994 12 C -0.574 4.574 13 C -0.034 4.034 14 C -0.528 4.528 15 H 0.028 0.972 16 C 0.039 3.961 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.261 1.261 20 H -0.290 1.290 21 H -0.200 1.200 22 C -0.170 4.170 23 C -0.159 4.159 24 C -0.192 4.192 25 C -0.175 4.175 26 C -0.182 4.182 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.420 0.580 37 H 0.121 0.879 38 H 0.162 0.838 39 H 0.267 0.733 40 H 0.076 0.924 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.393 6.344 -18.670 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.308 6.308 3 C 0.105 3.895 4 C -0.256 4.256 5 C 0.053 3.947 6 H 0.125 0.875 7 C -0.227 4.227 8 N -0.870 5.870 9 S 2.715 3.285 10 O -0.979 6.979 11 O -0.984 6.984 12 C -0.706 4.706 13 C -0.036 4.036 14 C -0.566 4.566 15 H 0.046 0.954 16 C -0.162 4.162 17 N -0.568 5.568 18 Si 0.727 3.273 19 H -0.186 1.186 20 H -0.216 1.216 21 H -0.122 1.122 22 C -0.206 4.206 23 C -0.198 4.198 24 C -0.211 4.211 25 C -0.211 4.211 26 C -0.218 4.218 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.070 0.930 36 H 0.256 0.744 37 H 0.139 0.861 38 H 0.180 0.820 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.099 0.901 44 H 0.136 0.864 45 H 0.125 0.875 46 H 0.123 0.877 47 H 0.123 0.877 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.415 5.638 -18.422 25.970 hybrid contribution -0.774 -0.059 1.161 1.396 sum -18.189 5.579 -17.261 25.688 Atomic orbital electron populations 1.23412 0.80680 1.03024 1.01941 1.87934 1.20720 1.27075 1.95024 1.21089 0.91513 0.83449 0.93450 1.22725 1.02960 1.01739 0.98189 1.20975 0.93770 0.96536 0.83443 0.87534 1.22299 1.01016 1.01418 0.98016 1.55659 1.46507 1.50478 1.34392 1.04473 0.73485 0.77825 0.72691 1.93455 1.55575 1.87471 1.61399 1.93544 1.85988 1.64433 1.54388 1.30122 1.06518 1.23036 1.10887 1.18700 0.93372 0.93150 0.98423 1.20502 1.03330 1.33471 0.99257 0.95370 1.25841 1.01160 0.94075 0.95125 1.70055 1.42066 1.35255 1.09380 0.86385 0.79640 0.82838 0.78439 1.18614 1.21618 1.12171 1.23048 0.96942 1.04348 0.96310 1.23133 1.02368 0.93564 1.00686 1.22919 0.98301 1.00850 0.98987 1.23280 1.03200 0.90559 1.04086 1.23425 0.92678 1.02325 1.03402 0.92533 0.91197 0.89943 0.89306 0.89857 0.92429 0.91954 0.89163 0.93015 0.74438 0.86089 0.82033 0.92371 0.90505 0.86781 0.86839 0.90148 0.86428 0.87515 0.87665 0.87716 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.12 113.37 1.03 1.10 16 2 O -0.39 -8.03 9.17 -148.98 -1.37 -9.40 16 3 C 0.15 2.70 0.53 -10.79 -0.01 2.70 16 4 C -0.20 -3.40 6.58 71.98 0.47 -2.92 16 5 C 0.16 3.74 2.04 44.99 0.09 3.83 16 6 H 0.11 2.12 7.02 -2.39 -0.02 2.11 16 7 C -0.17 -3.99 9.13 71.98 0.66 -3.33 16 8 N -1.11 -33.75 4.58 -169.38 -0.78 -34.53 16 9 S 2.62 109.32 4.85 -56.49 -0.27 109.04 16 10 O -0.99 -44.84 17.11 -127.65 -2.18 -47.02 16 11 O -0.99 -53.13 17.50 -127.65 -2.23 -55.36 16 12 C -0.57 -20.88 5.58 71.98 0.40 -20.48 16 13 C -0.03 -1.49 0.94 -52.93 -0.05 -1.54 16 14 C -0.53 -30.56 8.15 25.60 0.21 -30.35 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 16 C 0.04 2.30 5.46 84.65 0.46 2.76 16 17 N -0.93 -60.34 13.96 21.45 0.30 -60.04 16 18 Si 0.91 41.58 25.07 68.60 1.72 43.30 16 19 H -0.26 -11.31 7.00 99.48 0.70 -10.62 16 20 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.20 -7.68 5.72 99.48 0.57 -7.11 16 22 C -0.17 -6.36 9.92 30.62 0.30 -6.06 16 23 C -0.16 -5.73 8.01 30.62 0.25 -5.49 16 24 C -0.19 -2.68 5.15 -10.80 -0.06 -2.74 16 25 C -0.17 -1.88 9.56 30.62 0.29 -1.58 16 26 C -0.18 -1.92 8.05 30.62 0.25 -1.68 16 27 H 0.06 0.71 5.29 -2.38 -0.01 0.70 16 28 H 0.07 0.81 5.25 -2.38 -0.01 0.80 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.26 7.02 -2.38 -0.02 1.24 16 31 H 0.08 1.10 5.20 -2.39 -0.01 1.09 16 32 H 0.06 1.18 7.60 -2.39 -0.02 1.17 16 33 H 0.06 1.53 7.68 -2.38 -0.02 1.52 16 34 H 0.09 1.58 6.15 -2.39 -0.01 1.57 16 35 H 0.05 1.46 7.42 -2.39 -0.02 1.44 16 36 H 0.42 12.36 8.36 -96.75 -0.81 11.55 16 37 H 0.12 4.32 5.20 -2.39 -0.01 4.31 16 38 H 0.16 3.98 7.20 -2.39 -0.02 3.96 16 39 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 40 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 41 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 42 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.12 1.61 6.08 -2.38 -0.01 1.59 16 45 H 0.11 1.08 5.84 -2.38 -0.01 1.07 16 46 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 48 H 0.11 1.05 4.68 -2.39 -0.01 1.04 16 Total: -1.00 -81.65 369.61 -0.49 -82.14 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.02 Total: 37.64 kcal Atomic # 6 Polarization: -70.08 SS G_CDS: 4.31 Total: -65.77 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -0.48 Total: -94.57 kcal Atomic # 8 Polarization: -106.00 SS G_CDS: -5.78 Total: -111.78 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.72 Total: 43.30 kcal Atomic # 16 Polarization: 109.32 SS G_CDS: -0.27 Total: 109.04 kcal Total: -81.65 -0.49 -82.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416577827.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.990 kcal (2) G-P(sol) polarization free energy of solvation -81.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds