Wall clock time and date at job start Tue Mar 31 2020 17:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00204 * 2 1 4 4 C 1.53001 * 109.46805 * 305.83910 * 3 2 1 5 5 C 1.52994 * 109.47277 * 185.84265 * 3 2 1 6 6 H 1.08996 * 109.47404 * 176.21647 * 5 3 2 7 7 C 1.53001 * 109.47266 * 56.21643 * 5 3 2 8 8 N 1.46500 * 109.47236 * 296.21961 * 5 3 2 9 9 S 1.65602 * 120.00092 * 231.81056 * 8 5 3 10 10 O 1.42098 * 104.27901 * 181.34044 * 9 8 5 11 11 O 1.42105 * 104.27557 * 309.20445 * 9 8 5 12 12 C 1.81409 * 104.44876 * 65.26943 * 9 8 5 13 13 C 1.52998 * 109.46996 * 181.86552 * 12 9 8 14 14 C 1.50708 * 115.54990 * 65.10833 * 13 12 9 15 15 H 1.07994 * 119.99799 * 269.30326 * 14 13 12 16 16 C 1.37871 * 119.99566 * 89.29690 * 14 13 12 17 17 N 1.31511 * 120.00602 * 4.52876 * 16 14 13 18 18 Si 1.86804 * 119.99528 * 184.52906 * 16 14 13 19 19 H 1.48500 * 109.47228 * 90.00152 * 18 16 14 20 20 H 1.48504 * 109.46828 * 210.00002 * 18 16 14 21 21 H 1.48499 * 109.47190 * 329.99765 * 18 16 14 22 22 C 1.52995 * 117.50188 * 279.43899 * 13 12 9 23 23 C 1.53003 * 117.49916 * 210.77778 * 13 12 9 24 24 C 1.53000 * 109.47386 * 65.83756 * 3 2 1 25 25 C 1.53006 * 117.49534 * 7.51458 * 24 3 2 26 26 C 1.52996 * 117.49771 * 298.89411 * 24 3 2 27 27 H 1.09001 * 109.46646 * 49.91199 * 1 2 3 28 28 H 1.08994 * 109.46665 * 169.90979 * 1 2 3 29 29 H 1.09002 * 109.46920 * 289.91108 * 1 2 3 30 30 H 1.09005 * 109.47278 * 300.00117 * 4 3 2 31 31 H 1.09007 * 109.47224 * 59.99897 * 4 3 2 32 32 H 1.08997 * 109.47098 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47091 * 299.99783 * 7 5 3 34 34 H 1.08998 * 109.47132 * 60.00181 * 7 5 3 35 35 H 1.09000 * 109.47320 * 179.97438 * 7 5 3 36 36 H 0.96998 * 119.99880 * 52.07838 * 8 5 3 37 37 H 1.08995 * 109.47405 * 301.86681 * 12 9 8 38 38 H 1.09000 * 109.46879 * 61.86901 * 12 9 8 39 39 H 0.96999 * 120.00208 * 185.00583 * 17 16 14 40 40 H 1.09002 * 117.50074 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.50277 * 145.02206 * 22 13 12 42 42 H 1.09002 * 117.49760 * 214.97866 * 23 13 12 43 43 H 1.08994 * 117.49278 * 359.97438 * 23 13 12 44 44 H 1.09002 * 115.54891 * 153.21469 * 24 3 2 45 45 H 1.09004 * 117.49683 * 359.97438 * 25 24 3 46 46 H 1.08993 * 117.49651 * 145.01885 * 25 24 3 47 47 H 1.09005 * 117.49183 * 214.97904 * 26 24 3 48 48 H 1.09000 * 117.50124 * 359.96622 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4462 2.1148 -1.1694 5 6 3.5286 1.1877 -0.1468 6 1 3.9655 2.1839 -0.2144 7 6 3.8587 0.3990 -1.4157 8 7 4.0794 0.4909 1.0182 9 16 5.3339 1.1605 1.8669 10 8 5.6159 0.2094 2.8843 11 8 6.2988 1.4785 0.8734 12 6 4.6376 2.6737 2.5853 13 6 5.7253 3.4153 3.3650 14 6 6.8692 3.9463 2.5398 15 1 7.7450 3.3363 2.3753 16 6 6.7973 5.2107 1.9948 17 7 5.7715 5.9871 2.2678 18 14 8.1570 5.8209 0.8686 19 1 7.8322 5.4668 -0.5365 20 1 8.2773 7.2959 0.9922 21 1 9.4423 5.1854 1.2549 22 6 6.0431 2.9216 4.7778 23 6 5.2881 4.2382 4.5786 24 6 1.6784 2.0116 1.3161 25 6 0.9893 1.1875 2.4057 26 6 0.2016 2.2502 1.6368 27 1 -0.3633 0.6618 -0.7863 28 1 -0.3632 -1.0117 -0.1800 29 1 -0.3633 0.3500 0.9663 30 1 1.6826 1.6118 -2.1071 31 1 0.3644 2.1987 -1.0649 32 1 1.8892 3.1107 -1.1692 33 1 3.4219 -0.5973 -1.3482 34 1 3.4490 0.9174 -2.2826 35 1 4.9404 0.3155 -1.5206 36 1 3.7118 -0.3646 1.2902 37 1 4.2611 3.3146 1.7881 38 1 3.8210 2.4138 3.2589 39 1 5.6839 6.8474 1.8283 40 1 5.4776 2.0681 5.1517 41 1 7.0793 2.9811 5.1106 42 1 5.8281 5.1633 4.7803 43 1 4.2256 4.2515 4.8212 44 1 2.3919 2.7714 1.6348 45 1 0.7721 0.1424 2.1846 46 1 1.2495 1.4051 3.4415 47 1 -0.0564 3.1670 2.1669 48 1 -0.5335 1.9046 0.9100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416577846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:43 Heat of formation + Delta-G solvation = -51.768971 kcal Electronic energy + Delta-G solvation = -29447.255173 eV Core-core repulsion = 25632.163820 eV Total energy + Delta-G solvation = -3815.091353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.42156 -36.75058 -36.33776 -35.79068 -35.35902 -35.01719 -32.00304 -31.41990 -28.59033 -28.22746 -27.50773 -25.44377 -24.32191 -22.30304 -21.63896 -21.15941 -20.30575 -19.57920 -18.65047 -17.20396 -16.80327 -16.54844 -16.35178 -15.44869 -15.09018 -14.99661 -14.68767 -14.54383 -14.04620 -13.71916 -13.52560 -13.30012 -13.14976 -12.92328 -12.62275 -12.33903 -12.07124 -11.90447 -11.82774 -11.71674 -11.43882 -11.29435 -11.21894 -11.08576 -11.00746 -10.90776 -10.87406 -10.78647 -10.56604 -10.44745 -10.32745 -10.07571 -9.98207 -9.64949 -9.48761 -9.09839 -9.06865 -8.47969 -8.05664 -6.12200 -4.22293 1.10282 3.32052 3.37284 3.42417 3.44258 3.59015 3.87285 4.39340 4.44106 4.53533 4.68499 4.84306 4.97279 4.99566 5.09843 5.15254 5.16958 5.21301 5.23585 5.26963 5.33730 5.43390 5.48156 5.55297 5.60756 5.67743 5.71927 5.82223 5.91470 5.96793 6.01211 6.04014 6.06615 6.16910 6.26941 6.35781 6.39597 6.47443 6.61502 6.74812 7.01465 7.14357 7.23596 7.43933 7.51070 7.82124 8.22290 8.84451 9.48206 10.94899 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004922 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.534407 B = 5687.249977 C = 5825.487424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.366 6.366 3 C 0.138 3.862 4 C -0.181 4.181 5 C 0.172 3.828 6 H 0.101 0.899 7 C -0.161 4.161 8 N -1.117 6.117 9 S 2.604 3.396 10 O -0.977 6.977 11 O -0.947 6.947 12 C -0.557 4.557 13 C 0.036 3.964 14 C -0.506 4.506 15 H 0.069 0.931 16 C 0.079 3.921 17 N -0.877 5.877 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.270 1.270 22 C -0.215 4.215 23 C -0.128 4.128 24 C -0.182 4.182 25 C -0.175 4.175 26 C -0.193 4.193 27 H 0.047 0.953 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.414 0.586 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.261 0.739 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.121 0.879 45 H 0.107 0.893 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.854 -8.004 -5.053 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.285 6.285 3 C 0.096 3.904 4 C -0.239 4.239 5 C 0.064 3.936 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.873 5.873 9 S 2.701 3.299 10 O -0.967 6.967 11 O -0.937 6.937 12 C -0.689 4.689 13 C 0.034 3.966 14 C -0.543 4.543 15 H 0.087 0.913 16 C -0.125 4.125 17 N -0.513 5.513 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.194 1.194 22 C -0.253 4.253 23 C -0.167 4.167 24 C -0.200 4.200 25 C -0.211 4.211 26 C -0.230 4.230 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.247 0.753 37 H 0.143 0.857 38 H 0.120 0.880 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.139 0.861 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.821 -8.178 -5.061 16.027 hybrid contribution -0.486 0.859 -0.384 1.059 sum -13.306 -7.319 -5.445 16.133 Atomic orbital electron populations 1.23442 0.82345 1.02390 1.01719 1.87942 1.18933 1.26884 1.94752 1.21360 0.93616 0.82877 0.92510 1.22473 1.01760 1.01383 0.98276 1.20632 0.89665 0.96828 0.86462 0.88144 1.22167 1.02706 1.01084 0.96050 1.55861 1.56489 1.33507 1.41399 1.05206 0.74004 0.76376 0.74322 1.93505 1.83321 1.59924 1.59991 1.93554 1.56869 1.85183 1.58050 1.30116 1.09146 1.18292 1.11367 1.18321 0.93961 0.98505 0.85810 1.20555 1.01666 1.00038 1.32036 0.91262 1.24929 0.96015 0.95873 0.95660 1.70029 1.30058 1.10601 1.40580 0.86612 0.82781 0.77413 0.81555 1.20061 1.21317 1.19431 1.23258 1.00882 0.98067 1.03061 1.22475 0.97177 0.94120 1.02921 1.23166 0.96295 1.03546 0.97011 1.23143 1.03610 0.97512 0.96875 1.23372 0.94335 1.01162 1.04120 0.93498 0.90377 0.91570 0.91112 0.91672 0.90669 0.91436 0.91828 0.91371 0.75313 0.85662 0.88008 0.92913 0.90835 0.89578 0.88976 0.91864 0.86114 0.87480 0.88763 0.88803 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 8.56 101.05 0.86 0.84 16 2 O -0.37 -4.10 8.47 -35.23 -0.30 -4.40 16 3 C 0.14 1.60 0.55 -90.62 -0.05 1.55 16 4 C -0.18 -1.81 7.65 37.16 0.28 -1.52 16 5 C 0.17 2.39 2.09 -67.93 -0.14 2.25 16 6 H 0.10 1.48 7.51 -51.93 -0.39 1.09 16 7 C -0.16 -2.04 9.06 37.16 0.34 -1.70 16 8 N -1.12 -17.11 4.72 -4.89 -0.02 -17.13 16 9 S 2.60 52.22 5.15 -107.50 -0.55 51.67 16 10 O -0.98 -21.61 18.08 -57.54 -1.04 -22.65 16 11 O -0.95 -22.26 16.99 -57.54 -0.98 -23.24 16 12 C -0.56 -11.24 4.70 37.16 0.17 -11.06 16 13 C 0.04 0.87 1.50 -155.66 -0.23 0.64 16 14 C -0.51 -13.69 7.86 -34.44 -0.27 -13.96 16 15 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 16 C 0.08 2.13 5.42 -17.82 -0.10 2.04 16 17 N -0.88 -23.65 12.30 55.43 0.68 -22.97 16 18 Si 0.89 21.32 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.22 -4.78 9.96 -26.70 -0.27 -5.04 16 23 C -0.13 -2.92 8.96 -26.69 -0.24 -3.16 16 24 C -0.18 -2.21 4.64 -90.62 -0.42 -2.63 16 25 C -0.17 -1.95 9.29 -26.73 -0.25 -2.19 16 26 C -0.19 -1.97 8.86 -26.73 -0.24 -2.20 16 27 H 0.05 0.36 5.65 -51.93 -0.29 0.07 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.55 3.52 -51.93 -0.18 0.36 16 30 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 31 H 0.06 0.56 5.41 -51.93 -0.28 0.28 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.81 7.59 -51.93 -0.39 0.42 16 34 H 0.06 0.68 6.53 -51.93 -0.34 0.34 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.41 5.74 8.73 -34.47 -0.30 5.44 16 37 H 0.13 2.51 6.79 -51.93 -0.35 2.16 16 38 H 0.10 1.77 7.83 -51.92 -0.41 1.37 16 39 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 40 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 42 H 0.09 2.27 7.94 -51.93 -0.41 1.86 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.12 1.67 5.28 -51.93 -0.27 1.40 16 45 H 0.11 1.13 5.65 -51.93 -0.29 0.84 16 46 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.10 0.87 4.82 -51.93 -0.25 0.61 16 LS Contribution 376.69 15.07 5.68 5.68 Total: -1.00 -31.82 376.69 -9.53 -41.35 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -7.44 Total: 11.56 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: -0.54 Total: -36.16 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.66 Total: -40.10 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -2.32 Total: -50.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 52.22 SS G_CDS: -0.55 Total: 51.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.82 -9.53 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416577846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.419 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds