Wall clock time and date at job start Tue Mar 31 2020 17:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00204 * 2 1 4 4 C 1.53001 * 109.46805 * 305.83910 * 3 2 1 5 5 C 1.52994 * 109.47277 * 185.84265 * 3 2 1 6 6 H 1.08996 * 109.47404 * 176.21647 * 5 3 2 7 7 C 1.53001 * 109.47266 * 56.21643 * 5 3 2 8 8 N 1.46500 * 109.47236 * 296.21961 * 5 3 2 9 9 S 1.65602 * 120.00092 * 231.81056 * 8 5 3 10 10 O 1.42098 * 104.27901 * 181.34044 * 9 8 5 11 11 O 1.42105 * 104.27557 * 309.20445 * 9 8 5 12 12 C 1.81409 * 104.44876 * 65.26943 * 9 8 5 13 13 C 1.52998 * 109.46996 * 181.86552 * 12 9 8 14 14 C 1.50708 * 115.54990 * 65.10833 * 13 12 9 15 15 H 1.07994 * 119.99799 * 269.30326 * 14 13 12 16 16 C 1.37871 * 119.99566 * 89.29690 * 14 13 12 17 17 N 1.31511 * 120.00602 * 4.52876 * 16 14 13 18 18 Si 1.86804 * 119.99528 * 184.52906 * 16 14 13 19 19 H 1.48500 * 109.47228 * 90.00152 * 18 16 14 20 20 H 1.48504 * 109.46828 * 210.00002 * 18 16 14 21 21 H 1.48499 * 109.47190 * 329.99765 * 18 16 14 22 22 C 1.52995 * 117.50188 * 279.43899 * 13 12 9 23 23 C 1.53003 * 117.49916 * 210.77778 * 13 12 9 24 24 C 1.53000 * 109.47386 * 65.83756 * 3 2 1 25 25 C 1.53006 * 117.49534 * 7.51458 * 24 3 2 26 26 C 1.52996 * 117.49771 * 298.89411 * 24 3 2 27 27 H 1.09001 * 109.46646 * 49.91199 * 1 2 3 28 28 H 1.08994 * 109.46665 * 169.90979 * 1 2 3 29 29 H 1.09002 * 109.46920 * 289.91108 * 1 2 3 30 30 H 1.09005 * 109.47278 * 300.00117 * 4 3 2 31 31 H 1.09007 * 109.47224 * 59.99897 * 4 3 2 32 32 H 1.08997 * 109.47098 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.47091 * 299.99783 * 7 5 3 34 34 H 1.08998 * 109.47132 * 60.00181 * 7 5 3 35 35 H 1.09000 * 109.47320 * 179.97438 * 7 5 3 36 36 H 0.96998 * 119.99880 * 52.07838 * 8 5 3 37 37 H 1.08995 * 109.47405 * 301.86681 * 12 9 8 38 38 H 1.09000 * 109.46879 * 61.86901 * 12 9 8 39 39 H 0.96999 * 120.00208 * 185.00583 * 17 16 14 40 40 H 1.09002 * 117.50074 * 0.02562 * 22 13 12 41 41 H 1.09002 * 117.50277 * 145.02206 * 22 13 12 42 42 H 1.09002 * 117.49760 * 214.97866 * 23 13 12 43 43 H 1.08994 * 117.49278 * 359.97438 * 23 13 12 44 44 H 1.09002 * 115.54891 * 153.21469 * 24 3 2 45 45 H 1.09004 * 117.49683 * 359.97438 * 25 24 3 46 46 H 1.08993 * 117.49651 * 145.01885 * 25 24 3 47 47 H 1.09005 * 117.49183 * 214.97904 * 26 24 3 48 48 H 1.09000 * 117.50124 * 359.96622 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4462 2.1148 -1.1694 5 6 3.5286 1.1877 -0.1468 6 1 3.9655 2.1839 -0.2144 7 6 3.8587 0.3990 -1.4157 8 7 4.0794 0.4909 1.0182 9 16 5.3339 1.1605 1.8669 10 8 5.6159 0.2094 2.8843 11 8 6.2988 1.4785 0.8734 12 6 4.6376 2.6737 2.5853 13 6 5.7253 3.4153 3.3650 14 6 6.8692 3.9463 2.5398 15 1 7.7450 3.3363 2.3753 16 6 6.7973 5.2107 1.9948 17 7 5.7715 5.9871 2.2678 18 14 8.1570 5.8209 0.8686 19 1 7.8322 5.4668 -0.5365 20 1 8.2773 7.2959 0.9922 21 1 9.4423 5.1854 1.2549 22 6 6.0431 2.9216 4.7778 23 6 5.2881 4.2382 4.5786 24 6 1.6784 2.0116 1.3161 25 6 0.9893 1.1875 2.4057 26 6 0.2016 2.2502 1.6368 27 1 -0.3633 0.6618 -0.7863 28 1 -0.3632 -1.0117 -0.1800 29 1 -0.3633 0.3500 0.9663 30 1 1.6826 1.6118 -2.1071 31 1 0.3644 2.1987 -1.0649 32 1 1.8892 3.1107 -1.1692 33 1 3.4219 -0.5973 -1.3482 34 1 3.4490 0.9174 -2.2826 35 1 4.9404 0.3155 -1.5206 36 1 3.7118 -0.3646 1.2902 37 1 4.2611 3.3146 1.7881 38 1 3.8210 2.4138 3.2589 39 1 5.6839 6.8474 1.8283 40 1 5.4776 2.0681 5.1517 41 1 7.0793 2.9811 5.1106 42 1 5.8281 5.1633 4.7803 43 1 4.2256 4.2515 4.8212 44 1 2.3919 2.7714 1.6348 45 1 0.7721 0.1424 2.1846 46 1 1.2495 1.4051 3.4415 47 1 -0.0564 3.1670 2.1669 48 1 -0.5335 1.9046 0.9100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416577846.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:42 Heat of formation + Delta-G solvation = -73.115544 kcal Electronic energy + Delta-G solvation = -29448.180830 eV Core-core repulsion = 25632.163820 eV Total energy + Delta-G solvation = -3816.017010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.28699 -38.57765 -37.98688 -36.97977 -36.69408 -36.21251 -34.04471 -32.43997 -30.00667 -29.49515 -28.23385 -27.47110 -25.20479 -23.11836 -22.98324 -22.62854 -21.63513 -20.97646 -20.24158 -18.49710 -18.33422 -18.02153 -17.38595 -16.79496 -16.68642 -16.30960 -16.27244 -15.73038 -15.63000 -14.92485 -14.87150 -14.38551 -14.16984 -14.08528 -13.82221 -13.65173 -13.58082 -13.15815 -13.09106 -12.93550 -12.90363 -12.89021 -12.82112 -12.63292 -12.43657 -12.36424 -12.22784 -12.17476 -11.99818 -11.85930 -11.65601 -11.44049 -11.20437 -11.02661 -10.89127 -10.46468 -10.33636 -10.27578 -9.84182 -8.17187 -6.31232 -0.50028 1.38794 1.41526 1.50567 2.02048 2.41261 2.70543 2.93724 3.04721 3.09881 3.38171 3.45755 3.53029 3.76903 3.91121 4.02733 4.11643 4.12483 4.25161 4.28966 4.44003 4.45140 4.51400 4.55849 4.58880 4.64216 4.65495 4.75859 4.81575 4.84286 4.91048 4.92943 4.97264 5.03449 5.14123 5.18313 5.20361 5.26643 5.31447 5.38513 5.45862 5.47099 5.64963 5.73054 6.23076 6.24610 6.36877 6.74864 7.40176 8.89333 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.004922 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.534407 B = 5687.249977 C = 5825.487424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.378 6.378 3 C 0.147 3.853 4 C -0.182 4.182 5 C 0.161 3.839 6 H 0.086 0.914 7 C -0.159 4.159 8 N -1.099 6.099 9 S 2.619 3.381 10 O -1.000 7.000 11 O -0.988 6.988 12 C -0.547 4.547 13 C 0.008 3.992 14 C -0.524 4.524 15 H 0.047 0.953 16 C 0.045 3.955 17 N -0.891 5.891 18 Si 0.930 3.070 19 H -0.273 1.273 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.208 4.208 23 C -0.123 4.123 24 C -0.202 4.202 25 C -0.178 4.178 26 C -0.177 4.177 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.048 0.952 36 H 0.423 0.577 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.179 -8.555 -5.719 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.297 6.297 3 C 0.105 3.895 4 C -0.239 4.239 5 C 0.054 3.946 6 H 0.104 0.896 7 C -0.218 4.218 8 N -0.859 5.859 9 S 2.716 3.284 10 O -0.991 6.991 11 O -0.977 6.977 12 C -0.680 4.680 13 C 0.006 3.994 14 C -0.562 4.562 15 H 0.065 0.935 16 C -0.158 4.158 17 N -0.527 5.527 18 Si 0.756 3.244 19 H -0.199 1.199 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.245 4.245 23 C -0.162 4.162 24 C -0.220 4.220 25 C -0.215 4.215 26 C -0.213 4.213 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.067 0.933 36 H 0.259 0.741 37 H 0.142 0.858 38 H 0.148 0.852 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.118 0.882 45 H 0.132 0.868 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.148 -8.732 -5.719 18.396 hybrid contribution 0.197 0.992 -0.169 1.026 sum -14.951 -7.740 -5.889 17.835 Atomic orbital electron populations 1.23625 0.80816 1.03696 1.02409 1.87919 1.20570 1.26321 1.94861 1.21133 0.91831 0.83481 0.93010 1.22492 1.02736 1.00817 0.97869 1.20872 0.91564 0.96119 0.86087 0.89572 1.22155 1.01618 1.01712 0.96269 1.55362 1.55503 1.33646 1.41353 1.04483 0.74232 0.75994 0.73729 1.93461 1.84224 1.60475 1.60893 1.93503 1.59222 1.85760 1.59232 1.29957 1.08663 1.17850 1.11496 1.18450 0.94499 1.00005 0.86453 1.20674 1.02219 1.00250 1.33032 0.93527 1.25422 0.97655 0.96016 0.96668 1.70064 1.30842 1.10802 1.41032 0.85982 0.80689 0.77530 0.80238 1.19860 1.20038 1.19968 1.23301 1.00930 0.98475 1.01776 1.22389 0.98152 0.93320 1.02344 1.23132 0.97326 1.03844 0.97736 1.23199 1.03724 0.98118 0.96413 1.23451 0.93343 1.00751 1.03746 0.92274 0.89041 0.91163 0.90206 0.89947 0.91258 0.90569 0.89635 0.93299 0.74145 0.85788 0.85212 0.92633 0.88631 0.90156 0.91278 0.89681 0.88176 0.86761 0.89257 0.88816 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 8.56 113.37 0.97 0.83 16 2 O -0.38 -7.42 8.47 -148.98 -1.26 -8.68 16 3 C 0.15 3.13 0.55 -10.80 -0.01 3.13 16 4 C -0.18 -3.16 7.65 71.98 0.55 -2.61 16 5 C 0.16 4.33 2.09 44.99 0.09 4.42 16 6 H 0.09 2.56 7.51 -2.39 -0.02 2.54 16 7 C -0.16 -3.83 9.06 71.98 0.65 -3.18 16 8 N -1.10 -33.01 4.72 -169.40 -0.80 -33.81 16 9 S 2.62 105.56 5.15 -56.49 -0.29 105.27 16 10 O -1.00 -44.10 18.08 -127.65 -2.31 -46.41 16 11 O -0.99 -47.67 16.99 -127.65 -2.17 -49.84 16 12 C -0.55 -21.93 4.70 71.98 0.34 -21.59 16 13 C 0.01 0.39 1.50 -52.93 -0.08 0.31 16 14 C -0.52 -28.98 7.86 25.60 0.20 -28.78 16 15 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 16 C 0.04 2.44 5.42 84.65 0.46 2.90 16 17 N -0.89 -48.21 12.30 21.44 0.26 -47.95 16 18 Si 0.93 43.97 29.54 68.60 2.03 45.99 16 19 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 22 C -0.21 -9.11 9.96 30.62 0.30 -8.81 16 23 C -0.12 -5.57 8.96 30.62 0.27 -5.30 16 24 C -0.20 -4.55 4.64 -10.79 -0.05 -4.60 16 25 C -0.18 -3.57 9.29 30.60 0.28 -3.28 16 26 C -0.18 -3.11 8.86 30.59 0.27 -2.84 16 27 H 0.06 0.67 5.65 -2.39 -0.01 0.66 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.91 3.52 -2.39 -0.01 0.90 16 30 H 0.08 1.24 6.53 -2.38 -0.02 1.22 16 31 H 0.08 1.14 5.41 -2.38 -0.01 1.13 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.69 7.59 -2.39 -0.02 1.68 16 34 H 0.08 1.66 6.53 -2.39 -0.02 1.65 16 35 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.42 11.27 8.73 -96.75 -0.84 10.42 16 37 H 0.12 5.01 6.79 -2.39 -0.02 4.99 16 38 H 0.13 4.36 7.83 -2.39 -0.02 4.34 16 39 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 40 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 41 H 0.08 3.56 8.14 -2.39 -0.02 3.55 16 42 H 0.07 3.43 7.94 -2.39 -0.02 3.41 16 43 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.10 2.69 5.28 -2.39 -0.01 2.68 16 45 H 0.11 2.12 5.65 -2.39 -0.01 2.10 16 46 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.09 1.67 8.14 -2.38 -0.02 1.66 16 48 H 0.12 1.63 4.82 -2.39 -0.01 1.61 16 Total: -1.00 -68.14 376.69 -0.14 -68.28 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.13 Total: 36.54 kcal Atomic # 6 Polarization: -73.67 SS G_CDS: 4.27 Total: -69.41 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -0.54 Total: -81.75 kcal Atomic # 8 Polarization: -99.19 SS G_CDS: -5.74 Total: -104.93 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: 105.56 SS G_CDS: -0.29 Total: 105.27 kcal Total: -68.14 -0.14 -68.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416577846.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.835 kcal (2) G-P(sol) polarization free energy of solvation -68.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds