Wall clock time and date at job start Tue Mar 31 2020 16:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00365 * 2 1 4 4 N 1.46499 * 109.47592 * 124.99209 * 3 2 1 5 5 C 1.35321 * 125.86599 * 125.32329 * 4 3 2 6 6 C 1.35348 * 106.17121 * 180.12589 * 5 4 3 7 7 C 1.50703 * 126.74643 * 179.85585 * 6 5 4 8 8 N 1.46509 * 109.46993 * 94.71161 * 7 6 5 9 9 C 1.34777 * 119.99703 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00239 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99973 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46775 * 90.00171 * 21 19 17 23 23 H 1.48496 * 109.47273 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00230 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 N 1.33763 * 106.49959 * 359.58922 * 6 5 4 27 27 N 1.28634 * 108.88745 * 0.26887 * 26 6 5 28 28 H 1.07994 * 120.00207 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99671 * 179.97438 * 2 1 3 31 31 H 1.09010 * 109.46947 * 4.99661 * 3 2 1 32 32 H 1.08997 * 109.47201 * 244.99916 * 3 2 1 33 33 H 1.07995 * 126.90888 * 359.97438 * 5 4 3 34 34 H 1.09000 * 109.47065 * 334.71064 * 7 6 5 35 35 H 1.08996 * 109.47026 * 214.70350 * 7 6 5 36 36 H 0.96999 * 119.99737 * 359.97438 * 8 7 6 37 37 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 38 38 H 1.07998 * 126.06449 * 0.02562 * 13 12 11 39 39 H 1.07999 * 126.07092 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 41 41 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 42 42 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3258 1.5583 1.0576 6 6 4.7907 1.4908 2.3269 7 6 6.2183 1.6706 2.7751 8 7 6.4315 3.0626 3.1794 9 6 7.6422 3.4583 3.6201 10 8 8.5572 2.6601 3.6826 11 7 7.8385 4.7389 3.9916 12 6 9.0976 5.1504 4.4505 13 6 10.2366 4.3386 4.5732 14 6 11.2440 5.1059 5.0479 15 7 10.7660 6.3563 5.2202 16 6 11.5242 7.5063 5.7190 17 6 11.4304 8.6379 4.7281 18 1 10.8625 8.5130 3.8180 19 6 12.0696 9.8325 4.9833 20 7 11.9882 10.8198 4.1183 21 14 13.0514 10.0488 6.5578 22 1 14.4575 9.6316 6.3255 23 1 13.0198 11.4753 6.9689 24 1 12.4574 9.2112 7.6305 25 7 9.4180 6.3619 4.8397 26 7 3.7329 1.2390 3.1060 27 7 2.6835 1.1504 2.3674 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 4.9024 1.7512 0.1650 34 1 6.8908 1.4238 1.9535 35 1 6.4195 1.0121 3.6199 36 1 5.7014 3.6992 3.1299 37 1 7.1084 5.3756 3.9421 38 1 10.2976 3.2880 4.3305 39 1 12.2521 4.7768 5.2521 40 1 11.1116 7.8262 6.6759 41 1 12.5688 7.2237 5.8499 42 1 12.4376 11.6604 4.2981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425657871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:46 Heat of formation + Delta-G solvation = 191.275880 kcal Electronic energy + Delta-G solvation = -25930.027185 eV Core-core repulsion = 21951.076255 eV Total energy + Delta-G solvation = -3978.950930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72810 -40.71876 -39.54465 -36.77280 -35.36529 -34.59243 -33.30964 -33.15133 -31.82748 -31.00060 -29.33458 -27.93591 -27.35735 -26.46315 -22.86023 -22.67119 -22.05486 -21.53436 -20.66903 -20.36794 -19.81099 -18.29485 -17.71111 -17.06655 -16.84578 -16.60189 -15.90055 -15.74324 -15.69251 -15.15261 -14.77766 -14.59767 -14.39323 -14.24527 -13.74477 -13.65289 -13.18290 -13.00681 -12.81780 -12.49944 -12.26551 -12.20482 -12.09601 -11.95964 -11.31928 -11.12863 -10.76158 -10.66711 -10.60532 -10.28870 -10.12318 -9.96561 -9.83576 -9.61879 -9.48668 -9.23972 -8.74026 -8.11761 -7.42410 -6.21049 -4.22995 1.07247 1.20717 1.86639 2.11840 2.59308 2.65993 3.10632 3.17756 3.25215 3.25976 3.60472 3.72494 3.84330 3.91067 4.06244 4.25453 4.30047 4.34323 4.35920 4.61008 4.70003 5.02271 5.07141 5.12056 5.28327 5.48814 5.56311 5.66484 5.74779 5.76830 5.80741 6.08972 6.17619 6.26246 6.38362 6.51861 6.61747 6.76531 6.99880 7.31203 7.48745 7.86982 7.93355 8.08004 8.37171 8.60297 8.64574 8.89135 9.34298 10.91702 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.001682 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.597238 B =16637.969666 C =17222.186963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.185 4.185 3 C 0.144 3.856 4 N -0.291 5.291 5 C -0.027 4.027 6 C -0.041 4.041 7 C 0.231 3.769 8 N -0.740 5.740 9 C 0.717 3.283 10 O -0.567 6.567 11 N -0.643 5.643 12 C 0.280 3.720 13 C -0.282 4.282 14 C 0.050 3.950 15 N -0.321 5.321 16 C 0.232 3.768 17 C -0.533 4.533 18 H 0.085 0.915 19 C 0.076 3.924 20 N -0.889 5.889 21 Si 0.873 3.127 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.301 5.301 26 N -0.251 5.251 27 N -0.076 5.076 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.195 0.805 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.398 0.602 37 H 0.408 0.592 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.852 -21.436 -10.135 30.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.203 4.203 3 C 0.024 3.976 4 N -0.083 5.083 5 C -0.179 4.179 6 C -0.180 4.180 7 C 0.105 3.895 8 N -0.397 5.397 9 C 0.416 3.584 10 O -0.443 6.443 11 N -0.293 5.293 12 C 0.025 3.975 13 C -0.313 4.313 14 C -0.099 4.099 15 N -0.103 5.103 16 C 0.113 3.887 17 C -0.572 4.572 18 H 0.103 0.897 19 C -0.128 4.128 20 N -0.526 5.526 21 Si 0.699 3.301 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.188 1.188 25 N -0.132 5.132 26 N -0.119 5.119 27 N -0.056 5.056 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.212 0.788 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.243 0.757 38 H 0.181 0.819 39 H 0.186 0.814 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.450 -20.987 -8.926 30.632 hybrid contribution 0.819 0.396 -0.430 1.006 sum -19.631 -20.591 -9.356 29.949 Atomic orbital electron populations 1.24029 0.95457 1.02999 0.95743 1.22823 0.96410 0.97213 1.03885 1.21234 0.91988 0.98574 0.85809 1.47490 1.07336 1.45417 1.08088 1.23566 0.84802 1.07876 1.01613 1.21945 0.97093 1.08635 0.90284 1.19177 0.86951 0.82248 1.01098 1.44975 1.11447 1.11775 1.71532 1.15521 0.82964 0.81693 0.78214 1.90871 1.41200 1.52348 1.59844 1.41360 1.10794 1.09839 1.67277 1.18782 0.85678 0.92522 1.00501 1.21540 0.91113 1.02361 1.16293 1.22549 0.99996 0.85519 1.01843 1.48571 1.06024 1.08296 1.47382 1.20027 0.89743 0.82775 0.96132 1.21125 1.33745 0.95791 1.06498 0.89654 1.24830 0.95897 0.95392 0.96642 1.69874 1.43094 1.04188 1.35461 0.86907 0.80934 0.78358 0.83914 1.19719 1.20573 1.18843 1.77388 0.95241 1.16632 1.23896 1.75162 0.95434 1.15180 1.26106 1.78381 1.21247 1.18920 0.87044 0.87249 0.87790 0.86362 0.87721 0.86554 0.78792 0.89390 0.89405 0.76803 0.75750 0.81931 0.81446 0.94086 0.93342 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.40 14.32 29.01 0.42 0.02 16 2 C -0.18 -0.64 9.63 -36.03 -0.35 -0.99 16 3 C 0.14 0.42 6.90 -5.20 -0.04 0.38 16 4 N -0.29 -1.95 3.43 -62.44 -0.21 -2.16 16 5 C -0.03 -0.16 11.50 -17.04 -0.20 -0.36 16 6 C -0.04 -0.37 6.61 -82.78 -0.55 -0.91 16 7 C 0.23 2.13 6.23 -5.19 -0.03 2.10 16 8 N -0.74 -7.72 5.55 -66.41 -0.37 -8.09 16 9 C 0.72 10.51 8.53 -86.92 -0.74 9.77 16 10 O -0.57 -10.01 13.47 5.29 0.07 -9.94 16 11 N -0.64 -10.13 5.46 -15.51 -0.08 -10.21 16 12 C 0.28 5.66 8.11 -154.36 -1.25 4.41 16 13 C -0.28 -5.56 9.61 -39.83 -0.38 -5.95 16 14 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 15 N -0.32 -7.36 3.67 -62.56 -0.23 -7.58 16 16 C 0.23 5.56 5.33 -5.19 -0.03 5.53 16 17 C -0.53 -15.15 9.79 -34.44 -0.34 -15.49 16 18 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 19 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 21 Si 0.87 20.25 27.47 -169.99 -4.67 15.58 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 25 N -0.30 -6.98 12.42 31.44 0.39 -6.59 16 26 N -0.25 -2.90 12.41 33.29 0.41 -2.49 16 27 N -0.08 -0.79 12.92 60.35 0.78 -0.01 16 28 H 0.11 0.23 8.06 -52.49 -0.42 -0.20 16 29 H 0.10 0.19 7.84 -52.49 -0.41 -0.22 16 30 H 0.12 0.46 8.06 -52.48 -0.42 0.03 16 31 H 0.10 0.20 7.79 -51.92 -0.40 -0.20 16 32 H 0.12 0.01 8.07 -51.93 -0.42 -0.41 16 33 H 0.20 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.40 3.41 8.48 -40.82 -0.35 3.06 16 37 H 0.41 5.30 8.84 -40.82 -0.36 4.94 16 38 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 39 H 0.17 2.58 8.06 -52.49 -0.42 2.16 16 40 H 0.04 0.98 7.20 -51.93 -0.37 0.61 16 41 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 42 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -37.78 371.49 -6.46 -44.24 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.14 Total: 6.28 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.78 Total: 1.33 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 1.46 Total: -63.08 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.78 -6.46 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425657871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.516 kcal (2) G-P(sol) polarization free energy of solvation -37.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 197.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds