Wall clock time and date at job start Tue Mar 31 2020 16:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00365 * 2 1 4 4 N 1.46499 * 109.47592 * 124.99209 * 3 2 1 5 5 C 1.35321 * 125.86599 * 125.32329 * 4 3 2 6 6 C 1.35348 * 106.17121 * 180.12589 * 5 4 3 7 7 C 1.50703 * 126.74643 * 179.85585 * 6 5 4 8 8 N 1.46509 * 109.46993 * 94.71161 * 7 6 5 9 9 C 1.34777 * 119.99703 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00263 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99754 * 179.97438 * 9 8 7 12 12 C 1.40193 * 119.99728 * 179.97438 * 11 9 8 13 13 C 1.40401 * 125.97600 * 0.02562 * 12 11 9 14 14 C 1.35244 * 107.86868 * 179.97438 * 13 12 11 15 15 N 1.34965 * 107.85999 * 359.97438 * 14 13 12 16 16 C 1.46493 * 125.97624 * 179.97438 * 15 14 13 17 17 C 1.50710 * 109.46991 * 125.02899 * 16 15 14 18 18 H 1.08002 * 119.99873 * 0.02562 * 17 16 15 19 19 C 1.37869 * 120.00276 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00239 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99973 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46775 * 90.00171 * 21 19 17 23 23 H 1.48496 * 109.47273 * 209.99980 * 21 19 17 24 24 H 1.48500 * 109.47108 * 330.00230 * 21 19 17 25 25 N 1.31214 * 125.96986 * 179.97438 * 12 11 9 26 26 N 1.33763 * 106.49959 * 359.58922 * 6 5 4 27 27 N 1.28634 * 108.88745 * 0.26887 * 26 6 5 28 28 H 1.07994 * 120.00207 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00034 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99671 * 179.97438 * 2 1 3 31 31 H 1.09010 * 109.46947 * 4.99661 * 3 2 1 32 32 H 1.08997 * 109.47201 * 244.99916 * 3 2 1 33 33 H 1.07995 * 126.90888 * 359.97438 * 5 4 3 34 34 H 1.09000 * 109.47065 * 334.71064 * 7 6 5 35 35 H 1.08996 * 109.47026 * 214.70350 * 7 6 5 36 36 H 0.96999 * 119.99737 * 359.97438 * 8 7 6 37 37 H 0.96999 * 119.99686 * 0.02562 * 11 9 8 38 38 H 1.07998 * 126.06449 * 0.02562 * 13 12 11 39 39 H 1.07999 * 126.07092 * 180.02562 * 14 13 12 40 40 H 1.09003 * 109.47538 * 245.02631 * 16 15 14 41 41 H 1.08999 * 109.47417 * 5.03540 * 16 15 14 42 42 H 0.96997 * 120.00075 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.3258 1.5583 1.0576 6 6 4.7907 1.4908 2.3269 7 6 6.2183 1.6706 2.7751 8 7 6.4315 3.0626 3.1794 9 6 7.6422 3.4583 3.6201 10 8 8.5572 2.6601 3.6826 11 7 7.8385 4.7389 3.9916 12 6 9.0976 5.1504 4.4505 13 6 10.2366 4.3386 4.5732 14 6 11.2440 5.1059 5.0479 15 7 10.7660 6.3563 5.2202 16 6 11.5242 7.5063 5.7190 17 6 11.4304 8.6379 4.7281 18 1 10.8625 8.5130 3.8180 19 6 12.0696 9.8325 4.9833 20 7 11.9882 10.8198 4.1183 21 14 13.0514 10.0488 6.5578 22 1 14.4575 9.6316 6.3255 23 1 13.0198 11.4753 6.9689 24 1 12.4574 9.2112 7.6305 25 7 9.4180 6.3619 4.8397 26 7 3.7329 1.2390 3.1060 27 7 2.6835 1.1504 2.3674 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 4.9024 1.7512 0.1650 34 1 6.8908 1.4238 1.9535 35 1 6.4195 1.0121 3.6199 36 1 5.7014 3.6992 3.1299 37 1 7.1084 5.3756 3.9421 38 1 10.2976 3.2880 4.3305 39 1 12.2521 4.7768 5.2521 40 1 11.1116 7.8262 6.6759 41 1 12.5688 7.2237 5.8499 42 1 12.4376 11.6604 4.2981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425657871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:45 Heat of formation + Delta-G solvation = 162.388760 kcal Electronic energy + Delta-G solvation = -25931.279825 eV Core-core repulsion = 21951.076255 eV Total energy + Delta-G solvation = -3980.203570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.31970 -42.19774 -40.84022 -37.23793 -36.39009 -35.86266 -35.16576 -33.67873 -33.15782 -32.22337 -30.92094 -29.06479 -28.22894 -27.47916 -24.59831 -23.21133 -23.16339 -22.42991 -21.86720 -21.29218 -20.91741 -19.35874 -19.05499 -18.44951 -18.05611 -17.44509 -17.10654 -16.82581 -16.28378 -16.17550 -15.94718 -15.68751 -15.60623 -15.32263 -14.76609 -14.63751 -14.40561 -14.32188 -14.08233 -13.78025 -13.72617 -13.18923 -12.97466 -12.66098 -12.51213 -12.39611 -12.28827 -11.93627 -11.81393 -11.59510 -11.45710 -11.22768 -11.09125 -10.84754 -10.55180 -10.33390 -10.22728 -9.70015 -8.99916 -8.35502 -6.45441 0.55278 0.89500 0.98392 1.11276 1.38231 1.40370 1.49513 1.54119 1.73435 1.79519 2.22139 2.30974 2.43856 2.97193 3.16879 3.25328 3.60176 3.79545 3.85542 3.97278 4.12542 4.14259 4.25106 4.47458 4.52395 4.62251 4.64025 4.81986 4.88687 4.90743 4.93361 4.98179 5.01954 5.13827 5.26649 5.42581 5.50837 5.57048 5.70286 5.81216 5.95746 6.05681 6.45193 6.59887 6.72908 7.14411 7.18045 7.42654 7.45343 8.81560 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.029510 B = 0.001682 C = 0.001625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.597238 B =16637.969666 C =17222.186963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.197 4.197 3 C 0.136 3.864 4 N -0.283 5.283 5 C -0.004 4.004 6 C -0.059 4.059 7 C 0.235 3.765 8 N -0.720 5.720 9 C 0.717 3.283 10 O -0.596 6.596 11 N -0.639 5.639 12 C 0.285 3.715 13 C -0.292 4.292 14 C 0.060 3.940 15 N -0.346 5.346 16 C 0.239 3.761 17 C -0.547 4.547 18 H 0.027 0.973 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.955 3.045 22 H -0.253 1.253 23 H -0.281 1.281 24 H -0.240 1.240 25 N -0.352 5.352 26 N -0.292 5.292 27 N -0.109 5.109 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.409 0.591 37 H 0.419 0.581 38 H 0.170 0.830 39 H 0.211 0.789 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 -22.556 -10.102 31.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.216 4.216 3 C 0.018 3.982 4 N -0.075 5.075 5 C -0.157 4.157 6 C -0.197 4.197 7 C 0.110 3.890 8 N -0.376 5.376 9 C 0.417 3.583 10 O -0.474 6.474 11 N -0.290 5.290 12 C 0.029 3.971 13 C -0.323 4.323 14 C -0.087 4.087 15 N -0.128 5.128 16 C 0.120 3.880 17 C -0.585 4.585 18 H 0.045 0.955 19 C -0.184 4.184 20 N -0.581 5.581 21 Si 0.776 3.224 22 H -0.177 1.177 23 H -0.207 1.207 24 H -0.163 1.163 25 N -0.183 5.183 26 N -0.159 5.159 27 N -0.088 5.088 28 H 0.131 0.869 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.169 0.831 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.256 0.744 38 H 0.187 0.813 39 H 0.228 0.772 40 H 0.062 0.938 41 H 0.100 0.900 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.019 -22.152 -8.916 31.161 hybrid contribution 0.479 0.638 -0.639 1.022 sum -19.540 -21.514 -9.556 30.594 Atomic orbital electron populations 1.24209 0.95464 1.03730 0.94835 1.22855 0.96705 0.97314 1.04708 1.21655 0.92284 0.98532 0.85766 1.47823 1.08143 1.43701 1.07859 1.24134 0.84593 1.05057 1.01876 1.21924 0.96351 1.10177 0.91294 1.19212 0.87896 0.80802 1.01123 1.44878 1.10194 1.12649 1.69908 1.15625 0.83756 0.80902 0.78053 1.90839 1.42528 1.52898 1.61111 1.41402 1.09844 1.10693 1.67071 1.19122 0.87276 0.91822 0.98854 1.21745 0.91190 1.02670 1.16711 1.23251 1.01660 0.84014 0.99806 1.48469 1.06186 1.09037 1.49082 1.19871 0.91619 0.81926 0.94612 1.21250 1.33228 0.98226 1.05766 0.95496 1.25906 0.97010 0.94473 1.00990 1.70050 1.44687 1.05082 1.38316 0.85622 0.79615 0.78506 0.78672 1.17678 1.20680 1.16349 1.77303 0.96209 1.18455 1.26331 1.75098 0.96485 1.16543 1.27755 1.78307 1.21292 1.20643 0.88584 0.86917 0.86795 0.87169 0.86625 0.83087 0.74717 0.87663 0.90904 0.75511 0.74436 0.81266 0.77249 0.93818 0.90018 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 14.32 67.78 0.97 0.33 16 2 C -0.20 -1.11 9.63 25.64 0.25 -0.86 16 3 C 0.14 0.46 6.90 85.63 0.59 1.05 16 4 N -0.28 -3.27 3.43 -351.47 -1.21 -4.47 16 5 C 0.00 -0.04 11.50 83.49 0.96 0.92 16 6 C -0.06 -0.96 6.61 41.60 0.28 -0.69 16 7 C 0.23 4.06 6.23 85.63 0.53 4.59 16 8 N -0.72 -14.22 5.55 -482.27 -2.68 -16.90 16 9 C 0.72 20.50 8.53 179.05 1.53 22.03 16 10 O -0.60 -20.61 13.47 -4.00 -0.05 -20.66 16 11 N -0.64 -19.98 5.46 -321.23 -1.75 -21.73 16 12 C 0.29 11.55 8.11 133.31 1.08 12.63 16 13 C -0.29 -11.27 9.61 22.11 0.21 -11.06 16 14 C 0.06 2.26 11.44 83.52 0.96 3.21 16 15 N -0.35 -15.69 3.67 -351.84 -1.29 -16.98 16 16 C 0.24 11.20 5.33 85.64 0.46 11.66 16 17 C -0.55 -31.77 9.79 25.60 0.25 -31.52 16 18 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 19 C 0.01 0.85 5.47 84.65 0.46 1.31 16 20 N -0.94 -58.20 13.96 21.44 0.30 -57.90 16 21 Si 0.95 40.92 27.47 68.60 1.88 42.81 16 22 H -0.25 -10.03 7.11 99.48 0.71 -9.33 16 23 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.24 -9.33 6.54 99.48 0.65 -8.68 16 25 N -0.35 -16.62 12.42 -54.43 -0.68 -17.30 16 26 N -0.29 -6.71 12.41 -48.60 -0.60 -7.31 16 27 N -0.11 -2.21 12.92 37.02 0.48 -1.73 16 28 H 0.11 0.38 8.06 -2.91 -0.02 0.36 16 29 H 0.11 0.25 7.84 -2.91 -0.02 0.22 16 30 H 0.11 0.78 8.06 -2.91 -0.02 0.75 16 31 H 0.12 0.18 7.79 -2.38 -0.02 0.16 16 32 H 0.15 -0.55 8.07 -2.39 -0.02 -0.57 16 33 H 0.24 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 6.51 8.48 -92.71 -0.79 5.72 16 37 H 0.42 10.86 8.84 -92.71 -0.82 10.04 16 38 H 0.17 6.33 5.91 -2.91 -0.02 6.31 16 39 H 0.21 5.72 8.06 -2.91 -0.02 5.70 16 40 H 0.04 2.01 7.20 -2.39 -0.02 1.99 16 41 H 0.08 3.27 7.50 -2.39 -0.02 3.25 16 42 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -86.80 371.49 2.35 -84.46 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.58 Total: 24.11 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 8.52 Total: 13.62 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -7.43 Total: -144.33 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.05 Total: -20.66 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.88 Total: 42.81 kcal Total: -86.80 2.35 -84.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425657871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.844 kcal (2) G-P(sol) polarization free energy of solvation -86.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds