Wall clock time and date at job start Tue Mar 31 2020 15:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 H 1.09000 * 109.47244 * 298.63266 * 3 2 1 5 5 O 1.42899 * 109.47394 * 58.63508 * 3 2 1 6 6 C 1.52999 * 109.47127 * 178.63165 * 3 2 1 7 7 H 1.08994 * 109.70647 * 298.52136 * 6 3 2 8 8 C 1.53625 * 109.66464 * 59.11659 * 6 3 2 9 9 C 1.53038 * 109.24554 * 174.54614 * 8 6 3 10 10 C 1.53040 * 109.53829 * 298.51505 * 9 8 6 11 11 C 1.53186 * 109.31444 * 61.35973 * 10 9 8 12 12 N 1.46916 * 108.77917 * 305.36624 * 11 10 9 13 13 S 1.65599 * 120.63240 * 233.58782 * 12 11 10 14 14 O 1.42099 * 104.27909 * 148.18837 * 13 12 11 15 15 O 1.42094 * 104.27801 * 20.33214 * 13 12 11 16 16 C 1.81398 * 104.45129 * 264.26008 * 13 12 11 17 17 C 1.52999 * 109.47365 * 188.44045 * 16 13 12 18 18 C 1.50705 * 115.54825 * 293.88940 * 17 16 13 19 19 H 1.08003 * 119.99811 * 91.53546 * 18 17 16 20 20 C 1.37874 * 119.99868 * 271.54035 * 18 17 16 21 21 N 1.31514 * 119.99553 * 182.78149 * 20 18 17 22 22 Si 1.86800 * 120.00388 * 2.77907 * 20 18 17 23 23 H 1.48491 * 109.47065 * 265.03785 * 22 20 18 24 24 H 1.48501 * 109.46785 * 25.03722 * 22 20 18 25 25 H 1.48499 * 109.46954 * 145.03581 * 22 20 18 26 26 C 1.52999 * 117.50044 * 79.56406 * 17 16 13 27 27 C 1.53003 * 117.50024 * 148.22490 * 17 16 13 28 28 H 1.09003 * 109.46610 * 60.00854 * 1 2 3 29 29 H 1.09003 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47863 * 300.00649 * 1 2 3 31 31 H 1.08994 * 109.47570 * 239.99811 * 2 1 3 32 32 H 1.09003 * 109.46610 * 119.99146 * 2 1 3 33 33 H 0.96702 * 114.00517 * 60.96552 * 5 3 2 34 34 H 1.08999 * 109.63550 * 54.55817 * 8 6 3 35 35 H 1.08997 * 109.45694 * 294.43244 * 8 6 3 36 36 H 1.08999 * 109.46296 * 178.48369 * 9 8 6 37 37 H 1.09007 * 109.44551 * 58.52343 * 9 8 6 38 38 H 1.09002 * 109.49450 * 301.40525 * 10 9 8 39 39 H 1.09003 * 109.49322 * 181.31682 * 10 9 8 40 40 H 1.09001 * 109.58441 * 185.57862 * 11 10 9 41 41 H 1.08999 * 109.58465 * 65.15729 * 11 10 9 42 42 H 1.08997 * 109.47319 * 68.43270 * 16 13 12 43 43 H 1.09010 * 109.47049 * 308.43568 * 16 13 12 44 44 H 0.97000 * 120.00074 * 180.02562 * 21 20 18 45 45 H 1.09003 * 117.49653 * 215.00168 * 26 17 16 46 46 H 1.08997 * 117.50123 * 0.02562 * 26 17 16 47 47 H 1.08997 * 117.50006 * 359.97052 * 27 17 16 48 48 H 1.09003 * 117.49885 * 144.97336 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6968 1.9492 -0.9020 5 8 1.5376 2.1254 1.1504 6 6 3.5696 1.4426 0.0344 7 1 3.9167 0.9599 0.9479 8 6 4.1143 0.6903 -1.1892 9 6 5.6395 0.8124 -1.2186 10 6 6.0326 2.2860 -1.3453 11 6 5.5092 3.0564 -0.1292 12 7 4.0632 2.8259 -0.0098 13 16 3.0101 4.1007 0.0802 14 8 1.8293 3.6251 -0.5513 15 8 3.7385 5.1956 -0.4580 16 6 2.7318 4.3335 1.8575 17 6 1.6095 5.3516 2.0690 18 6 1.9160 6.7585 1.6241 19 1 1.6656 7.0746 0.6221 20 6 2.5161 7.6420 2.4960 21 7 2.7337 8.8852 2.1262 22 14 3.0198 7.0734 4.2025 23 1 1.9424 7.3993 5.1710 24 1 3.2456 5.6057 4.1886 25 1 4.2720 7.7630 4.6045 26 6 0.1696 4.8588 1.9120 27 6 0.7220 5.1786 3.3033 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 1.8163 1.7372 1.9911 34 1 3.6973 1.1210 -2.0995 35 1 3.8347 -0.3611 -1.1230 36 1 6.0320 0.2572 -2.0705 37 1 6.0541 0.4040 -0.2969 38 1 5.5976 2.7017 -2.2542 39 1 7.1185 2.3703 -1.3897 40 1 5.6997 4.1215 -0.2617 41 1 6.0113 2.7026 0.7713 42 1 3.6467 4.6990 2.3237 43 1 2.4491 3.3822 2.3087 44 1 3.1562 9.5067 2.7394 45 1 -0.5560 5.5521 1.4868 46 1 0.0218 3.8091 1.6584 47 1 0.9373 4.3392 3.9643 48 1 0.3601 6.0824 3.7936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451227356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:04 Heat of formation + Delta-G solvation = -81.515658 kcal Electronic energy + Delta-G solvation = -29983.327657 eV Core-core repulsion = 26166.946391 eV Total energy + Delta-G solvation = -3816.381266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.54045 -37.39603 -36.80445 -35.78461 -34.98856 -33.11329 -32.28822 -32.06940 -31.00207 -28.27387 -26.30297 -25.38085 -23.94689 -22.96813 -21.54499 -21.22706 -20.50418 -19.27456 -18.31094 -17.26337 -16.52955 -16.30952 -16.00077 -15.30467 -15.08181 -14.87355 -14.60625 -14.35684 -14.23013 -13.85551 -13.79522 -13.51376 -13.34330 -12.96544 -12.73768 -12.52540 -12.24632 -12.14608 -11.86549 -11.57120 -11.47251 -11.22802 -11.20166 -11.09118 -11.04712 -10.96592 -10.90558 -10.77845 -10.53363 -10.48892 -10.16208 -9.98504 -9.74263 -9.56691 -9.44211 -8.96541 -8.84053 -8.58252 -8.24210 -6.09350 -4.15789 1.13502 3.27254 3.31007 3.36443 3.41118 4.26552 4.37264 4.42097 4.63626 4.73094 4.84259 4.86556 4.97611 5.02606 5.07880 5.11275 5.13294 5.22446 5.31395 5.32888 5.46407 5.59102 5.62373 5.69797 5.73078 5.77988 5.82400 5.86649 5.95612 5.97386 5.98542 6.04142 6.15489 6.24915 6.26690 6.33047 6.33567 6.42663 6.57582 6.60870 6.89579 6.93194 7.07312 7.25845 7.71598 7.73023 8.46518 8.95840 9.52622 11.02502 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.005753 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.734350 B = 4866.157374 C = 5952.908370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.150 4.150 3 C 0.065 3.935 4 H 0.164 0.836 5 O -0.540 6.540 6 C 0.126 3.874 7 H 0.068 0.932 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.132 4.132 11 C 0.115 3.885 12 N -1.006 6.006 13 S 2.622 3.378 14 O -0.949 6.949 15 O -0.958 6.958 16 C -0.560 4.560 17 C 0.007 3.993 18 C -0.507 4.507 19 H 0.083 0.917 20 C 0.086 3.914 21 N -0.887 5.887 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.255 1.255 25 H -0.293 1.293 26 C -0.169 4.169 27 C -0.190 4.190 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.360 0.640 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.108 0.892 43 H 0.116 0.884 44 H 0.266 0.734 45 H 0.085 0.915 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -21.123 -2.527 21.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.189 4.189 3 C 0.005 3.995 4 H 0.181 0.819 5 O -0.345 6.345 6 C 0.019 3.981 7 H 0.086 0.914 8 C -0.165 4.165 9 C -0.153 4.153 10 C -0.171 4.171 11 C -0.011 4.011 12 N -0.842 5.842 13 S 2.722 3.278 14 O -0.940 6.940 15 O -0.948 6.948 16 C -0.691 4.691 17 C 0.004 3.996 18 C -0.544 4.544 19 H 0.101 0.899 20 C -0.118 4.118 21 N -0.523 5.523 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.179 1.179 25 H -0.219 1.219 26 C -0.206 4.206 27 C -0.229 4.229 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.207 0.793 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.075 0.925 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.090 0.910 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.366 -20.053 -3.696 20.667 hybrid contribution 0.927 -0.759 2.233 2.534 sum 4.292 -20.812 -1.463 21.301 Atomic orbital electron populations 1.21639 0.94794 1.00654 1.03177 1.22229 0.97519 0.97021 1.02105 1.23328 0.89397 0.92857 0.93877 0.81910 1.87043 1.76497 1.55710 1.15270 1.21813 0.94942 0.82813 0.98565 0.91400 1.21974 0.96080 0.99939 0.98505 1.21470 0.95587 0.96578 1.01704 1.21866 1.00665 0.95508 0.99092 1.21403 0.79958 1.02023 0.97709 1.58194 1.17555 1.18634 1.89820 1.04785 0.73193 0.71530 0.78339 1.93415 1.48776 1.77991 1.73796 1.93523 1.72157 1.51938 1.77175 1.30388 1.08004 1.06759 1.23992 1.18745 0.86613 0.94135 1.00096 1.20412 1.41043 0.91613 1.01339 0.89896 1.24968 0.94160 0.94413 0.98298 1.69906 1.41969 1.03993 1.36450 0.86894 0.77951 0.80035 0.84861 1.20362 1.17884 1.21939 1.23058 0.97728 1.01242 0.98618 1.22933 1.07324 1.01417 0.91193 0.92377 0.93505 0.91778 0.91092 0.92372 0.79274 0.91044 0.90931 0.91922 0.92039 0.91337 0.91037 0.88315 0.92071 0.87320 0.86566 0.92458 0.89628 0.88303 0.90981 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.75 37.16 0.36 -1.09 16 2 C -0.15 -1.38 5.26 -26.73 -0.14 -1.52 16 3 C 0.07 0.79 1.72 -26.73 -0.05 0.74 16 4 H 0.16 2.48 5.55 -53.53 -0.30 2.18 16 5 O -0.54 -7.10 5.71 -59.41 -0.34 -7.44 16 6 C 0.13 1.41 2.73 -67.37 -0.18 1.23 16 7 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 8 C -0.13 -1.21 4.84 -26.39 -0.13 -1.34 16 9 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 10 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 11 C 0.11 1.51 6.45 -3.72 -0.02 1.48 16 12 N -1.01 -14.62 3.21 -106.24 -0.34 -14.96 16 13 S 2.62 51.96 4.51 -107.50 -0.48 51.47 16 14 O -0.95 -19.29 12.27 -67.14 -0.82 -20.11 16 15 O -0.96 -23.45 16.26 -57.54 -0.94 -24.38 16 16 C -0.56 -11.10 4.89 37.16 0.18 -10.92 16 17 C 0.01 0.16 0.76 -155.66 -0.12 0.04 16 18 C -0.51 -14.60 8.95 -34.44 -0.31 -14.91 16 19 H 0.08 2.66 8.06 -52.48 -0.42 2.24 16 20 C 0.09 2.50 5.47 -17.82 -0.10 2.40 16 21 N -0.89 -27.58 13.96 55.43 0.77 -26.81 16 22 Si 0.88 21.61 24.90 -169.99 -4.23 17.38 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.25 -5.77 5.71 56.52 0.32 -5.45 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 C -0.17 -3.58 9.94 -26.69 -0.27 -3.85 16 27 C -0.19 -4.03 7.50 -26.69 -0.20 -4.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.69 7.65 -51.93 -0.40 0.30 16 31 H 0.07 0.57 6.63 -51.93 -0.34 0.23 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.36 3.38 8.05 45.56 0.37 3.75 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.54 6.79 -51.93 -0.35 0.19 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.10 1.50 6.72 -51.93 -0.35 1.15 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 2.20 6.85 -51.93 -0.36 1.85 16 43 H 0.12 1.83 5.03 -51.92 -0.26 1.57 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 45 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 46 H 0.10 1.88 6.43 -51.93 -0.33 1.54 16 47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.09 1.93 7.19 -51.93 -0.37 1.55 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -35.09 361.93 -9.62 -44.71 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.41 Total: 9.41 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: -1.29 Total: -34.73 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.43 Total: -41.76 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -2.10 Total: -51.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.38 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.48 Total: 51.47 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.09 -9.62 -44.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451227356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.804 kcal (2) G-P(sol) polarization free energy of solvation -35.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds