Wall clock time and date at job start Tue Mar 31 2020 15:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47068 * 2 1 4 4 H 1.09000 * 109.47244 * 298.63266 * 3 2 1 5 5 O 1.42899 * 109.47394 * 58.63508 * 3 2 1 6 6 C 1.52999 * 109.47127 * 178.63165 * 3 2 1 7 7 H 1.08994 * 109.70647 * 298.52136 * 6 3 2 8 8 C 1.53625 * 109.66464 * 59.11659 * 6 3 2 9 9 C 1.53038 * 109.24554 * 174.54614 * 8 6 3 10 10 C 1.53040 * 109.53829 * 298.51505 * 9 8 6 11 11 C 1.53186 * 109.31444 * 61.35973 * 10 9 8 12 12 N 1.46916 * 108.77917 * 305.36624 * 11 10 9 13 13 S 1.65599 * 120.63240 * 233.58782 * 12 11 10 14 14 O 1.42099 * 104.27909 * 148.18837 * 13 12 11 15 15 O 1.42094 * 104.27801 * 20.33214 * 13 12 11 16 16 C 1.81398 * 104.45129 * 264.26008 * 13 12 11 17 17 C 1.52999 * 109.47365 * 188.44045 * 16 13 12 18 18 C 1.50705 * 115.54825 * 293.88940 * 17 16 13 19 19 H 1.08003 * 119.99811 * 91.53546 * 18 17 16 20 20 C 1.37874 * 119.99868 * 271.54035 * 18 17 16 21 21 N 1.31514 * 119.99553 * 182.78149 * 20 18 17 22 22 Si 1.86800 * 120.00388 * 2.77907 * 20 18 17 23 23 H 1.48491 * 109.47065 * 265.03785 * 22 20 18 24 24 H 1.48501 * 109.46785 * 25.03722 * 22 20 18 25 25 H 1.48499 * 109.46954 * 145.03581 * 22 20 18 26 26 C 1.52999 * 117.50044 * 79.56406 * 17 16 13 27 27 C 1.53003 * 117.50024 * 148.22490 * 17 16 13 28 28 H 1.09003 * 109.46610 * 60.00854 * 1 2 3 29 29 H 1.09003 * 109.47275 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47863 * 300.00649 * 1 2 3 31 31 H 1.08994 * 109.47570 * 239.99811 * 2 1 3 32 32 H 1.09003 * 109.46610 * 119.99146 * 2 1 3 33 33 H 0.96702 * 114.00517 * 60.96552 * 5 3 2 34 34 H 1.08999 * 109.63550 * 54.55817 * 8 6 3 35 35 H 1.08997 * 109.45694 * 294.43244 * 8 6 3 36 36 H 1.08999 * 109.46296 * 178.48369 * 9 8 6 37 37 H 1.09007 * 109.44551 * 58.52343 * 9 8 6 38 38 H 1.09002 * 109.49450 * 301.40525 * 10 9 8 39 39 H 1.09003 * 109.49322 * 181.31682 * 10 9 8 40 40 H 1.09001 * 109.58441 * 185.57862 * 11 10 9 41 41 H 1.08999 * 109.58465 * 65.15729 * 11 10 9 42 42 H 1.08997 * 109.47319 * 68.43270 * 16 13 12 43 43 H 1.09010 * 109.47049 * 308.43568 * 16 13 12 44 44 H 0.97000 * 120.00074 * 180.02562 * 21 20 18 45 45 H 1.09003 * 117.49653 * 215.00168 * 26 17 16 46 46 H 1.08997 * 117.50123 * 0.02562 * 26 17 16 47 47 H 1.08997 * 117.50006 * 359.97052 * 27 17 16 48 48 H 1.09003 * 117.49885 * 144.97336 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6968 1.9492 -0.9020 5 8 1.5376 2.1254 1.1504 6 6 3.5696 1.4426 0.0344 7 1 3.9167 0.9599 0.9479 8 6 4.1143 0.6903 -1.1892 9 6 5.6395 0.8124 -1.2186 10 6 6.0326 2.2860 -1.3453 11 6 5.5092 3.0564 -0.1292 12 7 4.0632 2.8259 -0.0098 13 16 3.0101 4.1007 0.0802 14 8 1.8293 3.6251 -0.5513 15 8 3.7385 5.1956 -0.4580 16 6 2.7318 4.3335 1.8575 17 6 1.6095 5.3516 2.0690 18 6 1.9160 6.7585 1.6241 19 1 1.6656 7.0746 0.6221 20 6 2.5161 7.6420 2.4960 21 7 2.7337 8.8852 2.1262 22 14 3.0198 7.0734 4.2025 23 1 1.9424 7.3993 5.1710 24 1 3.2456 5.6057 4.1886 25 1 4.2720 7.7630 4.6045 26 6 0.1696 4.8588 1.9120 27 6 0.7220 5.1786 3.3033 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8901 33 1 1.8163 1.7372 1.9911 34 1 3.6973 1.1210 -2.0995 35 1 3.8347 -0.3611 -1.1230 36 1 6.0320 0.2572 -2.0705 37 1 6.0541 0.4040 -0.2969 38 1 5.5976 2.7017 -2.2542 39 1 7.1185 2.3703 -1.3897 40 1 5.6997 4.1215 -0.2617 41 1 6.0113 2.7026 0.7713 42 1 3.6467 4.6990 2.3237 43 1 2.4491 3.3822 2.3087 44 1 3.1562 9.5067 2.7394 45 1 -0.5560 5.5521 1.4868 46 1 0.0218 3.8091 1.6584 47 1 0.9373 4.3392 3.9643 48 1 0.3601 6.0824 3.7936 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451227356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:03 Heat of formation + Delta-G solvation = -108.164772 kcal Electronic energy + Delta-G solvation = -29984.483249 eV Core-core repulsion = 26166.946391 eV Total energy + Delta-G solvation = -3817.536859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47233 -38.85299 -38.30441 -37.13519 -36.60237 -34.30165 -33.95288 -33.21638 -31.83838 -29.89668 -27.64824 -27.07612 -24.86451 -23.81703 -23.24534 -22.09297 -21.46827 -21.04864 -19.73188 -18.56129 -18.40666 -17.46523 -17.17154 -16.75631 -16.51481 -16.30087 -15.61949 -15.51734 -15.42132 -15.17123 -14.82868 -14.72808 -14.66783 -14.31319 -14.18988 -13.94889 -13.64929 -13.18518 -13.05004 -12.83542 -12.78079 -12.72385 -12.61970 -12.39556 -12.33486 -12.22486 -11.96395 -11.90093 -11.77379 -11.70344 -11.64604 -11.56036 -11.31661 -10.95247 -10.67329 -10.54878 -10.54612 -10.22453 -9.70371 -8.32732 -6.45407 -0.36386 1.33422 1.35252 1.50269 2.04284 2.35433 2.99689 3.11309 3.30658 3.33619 3.53405 3.54971 3.93654 4.00702 4.06480 4.13560 4.23796 4.28244 4.35202 4.39124 4.45349 4.48040 4.52553 4.57377 4.70823 4.79618 4.82350 4.85703 4.93690 4.94427 5.03713 5.08371 5.13155 5.20065 5.21434 5.25721 5.27238 5.33570 5.37735 5.49529 5.56318 5.57950 5.64749 5.72535 5.87450 6.20541 6.66093 7.01356 7.26929 8.84306 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.005753 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.734350 B = 4866.157374 C = 5952.908370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.066 3.934 4 H 0.123 0.877 5 O -0.563 6.563 6 C 0.121 3.879 7 H 0.107 0.893 8 C -0.127 4.127 9 C -0.111 4.111 10 C -0.133 4.133 11 C 0.105 3.895 12 N -0.998 5.998 13 S 2.620 3.380 14 O -0.965 6.965 15 O -1.023 7.023 16 C -0.554 4.554 17 C -0.024 4.024 18 C -0.514 4.514 19 H 0.018 0.982 20 C 0.019 3.981 21 N -0.947 5.947 22 Si 0.939 3.061 23 H -0.265 1.265 24 H -0.211 1.211 25 H -0.295 1.295 26 C -0.163 4.163 27 C -0.171 4.171 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.379 0.621 34 H 0.049 0.951 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.167 0.833 44 H 0.268 0.732 45 H 0.063 0.937 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.974 -26.541 0.470 27.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.006 3.994 4 H 0.140 0.860 5 O -0.372 6.372 6 C 0.016 3.984 7 H 0.125 0.875 8 C -0.166 4.166 9 C -0.148 4.148 10 C -0.172 4.172 11 C -0.020 4.020 12 N -0.836 5.836 13 S 2.721 3.279 14 O -0.955 6.955 15 O -1.014 7.014 16 C -0.686 4.686 17 C -0.026 4.026 18 C -0.552 4.552 19 H 0.037 0.963 20 C -0.179 4.179 21 N -0.586 5.586 22 Si 0.761 3.239 23 H -0.190 1.190 24 H -0.133 1.133 25 H -0.222 1.222 26 C -0.200 4.200 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.229 0.771 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.112 0.888 42 H 0.125 0.875 43 H 0.184 0.816 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.145 0.855 47 H 0.137 0.863 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.449 -25.499 -0.718 25.894 hybrid contribution 0.510 0.930 1.128 1.548 sum 4.959 -24.569 0.410 25.067 Atomic orbital electron populations 1.21650 0.95802 1.01328 1.01686 1.22151 0.96521 0.94999 1.04141 1.23110 0.89993 0.94184 0.92107 0.85981 1.86949 1.76866 1.56836 1.16525 1.22188 0.94342 0.80774 1.01126 0.87501 1.22041 0.96565 1.01281 0.96730 1.21477 0.95003 0.94800 1.03528 1.21902 1.01698 0.96840 0.96794 1.21626 0.79229 1.00773 1.00370 1.57741 1.17387 1.18847 1.89672 1.04487 0.73235 0.71545 0.78609 1.93458 1.49817 1.77929 1.74262 1.93445 1.73643 1.55584 1.78703 1.30290 1.06338 1.07910 1.24024 1.18632 0.88847 0.92125 1.03002 1.20571 1.40669 0.95153 0.98764 0.96325 1.26045 0.94068 0.94162 1.03637 1.70089 1.43978 1.05898 1.38618 0.85880 0.77604 0.82047 0.78360 1.18981 1.13316 1.22167 1.23068 0.95681 1.02132 0.99142 1.23047 1.04644 1.02361 0.90933 0.94568 0.91717 0.92639 0.89783 0.89407 0.77052 0.93216 0.87689 0.90342 0.89865 0.93776 0.88994 0.91699 0.88767 0.87544 0.81582 0.92362 0.91840 0.85541 0.86306 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.75 71.98 0.70 -1.86 16 2 C -0.14 -1.98 5.26 30.59 0.16 -1.82 16 3 C 0.07 1.42 1.72 30.59 0.05 1.47 16 4 H 0.12 3.71 5.55 -27.79 -0.15 3.55 16 5 O -0.56 -12.84 5.71 -125.86 -0.72 -13.56 16 6 C 0.12 2.26 2.73 45.12 0.12 2.38 16 7 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 8 C -0.13 -1.97 4.84 30.82 0.15 -1.82 16 9 C -0.11 -1.52 5.88 30.62 0.18 -1.34 16 10 C -0.13 -2.63 6.08 30.67 0.19 -2.45 16 11 C 0.10 2.62 6.45 86.36 0.56 3.17 16 12 N -1.00 -27.45 3.21 -490.05 -1.57 -29.03 16 13 S 2.62 106.00 4.51 -56.49 -0.25 105.75 16 14 O -0.96 -40.45 12.27 -118.47 -1.45 -41.90 16 15 O -1.02 -53.97 16.26 -127.65 -2.08 -56.04 16 16 C -0.55 -20.84 4.89 71.98 0.35 -20.49 16 17 C -0.02 -1.09 0.76 -52.93 -0.04 -1.13 16 18 C -0.51 -31.22 8.95 25.60 0.23 -30.99 16 19 H 0.02 1.31 8.06 -2.91 -0.02 1.29 16 20 C 0.02 1.15 5.47 84.65 0.46 1.61 16 21 N -0.95 -62.47 13.96 21.45 0.30 -62.17 16 22 Si 0.94 43.99 24.90 68.60 1.71 45.70 16 23 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.21 -8.36 5.71 99.48 0.57 -7.79 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C -0.16 -6.75 9.94 30.62 0.30 -6.45 16 27 C -0.17 -6.73 7.50 30.62 0.23 -6.50 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.05 1.05 7.65 -2.39 -0.02 1.03 16 31 H 0.08 0.99 6.63 -2.39 -0.02 0.97 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.38 4.91 8.05 -74.06 -0.60 4.31 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 0.99 6.79 -2.39 -0.02 0.98 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 2.06 6.72 -2.39 -0.02 2.04 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 4.05 6.85 -2.39 -0.02 4.04 16 43 H 0.17 4.41 5.03 -2.39 -0.01 4.39 16 44 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 45 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 46 H 0.13 4.51 6.43 -2.39 -0.02 4.50 16 47 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 48 H 0.07 3.04 7.19 -2.39 -0.02 3.02 16 Total: -1.00 -86.57 361.93 -0.34 -86.91 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.08 Total: 30.54 kcal Atomic # 6 Polarization: -69.85 SS G_CDS: 3.65 Total: -66.20 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -1.27 Total: -91.19 kcal Atomic # 8 Polarization: -107.25 SS G_CDS: -4.25 Total: -111.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.71 Total: 45.70 kcal Atomic # 16 Polarization: 106.00 SS G_CDS: -0.25 Total: 105.75 kcal Total: -86.57 -0.34 -86.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451227356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.254 kcal (2) G-P(sol) polarization free energy of solvation -86.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds