Wall clock time and date at job start Tue Mar 31 2020 15:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46744 * 2 1 4 4 H 1.08996 * 109.47189 * 304.99658 * 3 2 1 5 5 O 1.42892 * 109.47588 * 65.00025 * 3 2 1 6 6 C 1.53007 * 109.46778 * 184.99744 * 3 2 1 7 7 H 1.09003 * 109.58401 * 64.16609 * 6 3 2 8 8 C 1.53187 * 109.58686 * 303.87890 * 6 3 2 9 9 C 1.53039 * 109.31233 * 185.57674 * 8 6 3 10 10 C 1.53044 * 109.53842 * 61.36465 * 9 8 6 11 11 C 1.53198 * 109.31052 * 298.63626 * 10 9 8 12 12 N 1.46922 * 108.77662 * 54.63290 * 11 10 9 13 13 S 1.65604 * 120.62875 * 126.38844 * 12 11 10 14 14 O 1.42096 * 104.27550 * 27.72738 * 13 12 11 15 15 O 1.42104 * 104.27617 * 155.58126 * 13 12 11 16 16 C 1.81396 * 104.45092 * 271.65165 * 13 12 11 17 17 C 1.52996 * 109.47123 * 187.93604 * 16 13 12 18 18 C 1.50703 * 115.55224 * 40.16501 * 17 16 13 19 19 H 1.07998 * 120.00142 * 269.91493 * 18 17 16 20 20 C 1.37880 * 119.99853 * 89.90710 * 18 17 16 21 21 N 1.31513 * 119.99937 * 179.27684 * 20 18 17 22 22 Si 1.86799 * 119.99937 * 359.27988 * 20 18 17 23 23 H 1.48499 * 109.47002 * 90.04498 * 22 20 18 24 24 H 1.48501 * 109.46794 * 210.04149 * 22 20 18 25 25 H 1.48497 * 109.47406 * 330.04595 * 22 20 18 26 26 C 1.52996 * 117.49931 * 254.45771 * 17 16 13 27 27 C 1.52997 * 60.00156 * 252.51060 * 26 17 16 28 28 H 1.09003 * 109.47273 * 60.00340 * 1 2 3 29 29 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47196 * 299.99917 * 1 2 3 31 31 H 1.08996 * 109.47196 * 240.00083 * 2 1 3 32 32 H 1.09003 * 109.46818 * 119.99938 * 2 1 3 33 33 H 0.96708 * 113.99747 * 59.99472 * 5 3 2 34 34 H 1.08993 * 109.49946 * 305.52699 * 8 6 3 35 35 H 1.08997 * 109.50079 * 65.62778 * 8 6 3 36 36 H 1.08996 * 109.46559 * 181.38633 * 9 8 6 37 37 H 1.09006 * 109.46050 * 301.34508 * 9 8 6 38 38 H 1.08994 * 109.49934 * 58.58486 * 10 9 8 39 39 H 1.08995 * 109.50082 * 178.68709 * 10 9 8 40 40 H 1.08999 * 109.58401 * 174.42517 * 11 10 9 41 41 H 1.09004 * 109.58533 * 294.70392 * 11 10 9 42 42 H 1.09005 * 109.47046 * 307.93880 * 16 13 12 43 43 H 1.09001 * 109.47231 * 67.93557 * 16 13 12 44 44 H 0.96992 * 120.00165 * 180.02562 * 21 20 18 45 45 H 1.09004 * 117.50111 * 0.02562 * 26 17 16 46 46 H 1.08999 * 117.50199 * 145.02171 * 26 17 16 47 47 H 1.09000 * 117.50071 * 252.51186 * 27 26 17 48 48 H 1.08999 * 117.50077 * 107.49296 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0815 1.2209 6 6 3.5648 1.4444 -0.1257 7 1 3.8525 1.0243 -1.0895 8 6 4.1741 0.6060 1.0024 9 6 5.6991 0.7250 0.9545 10 6 6.1054 2.1855 1.1645 11 6 5.5179 3.0417 0.0382 12 7 4.0664 2.8210 -0.0158 13 16 3.0156 4.0995 0.0461 14 8 3.7519 5.1849 -0.5007 15 8 1.8397 3.6177 -0.5898 16 6 2.7211 4.3580 1.8172 17 6 1.6081 5.3910 2.0037 18 6 0.4498 5.2786 1.0461 19 1 0.4695 5.8157 0.1094 20 6 -0.6350 4.4898 1.3659 21 7 -1.6520 4.4030 0.5366 22 14 -0.6600 3.5448 2.9770 23 1 -1.2755 4.3859 4.0347 24 1 -1.4540 2.3011 2.8089 25 1 0.7295 3.1960 3.3680 26 6 2.0152 6.7937 2.4590 27 6 1.3028 5.8508 3.4307 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0141 1.6543 2.0138 34 1 3.8108 0.9703 1.9633 35 1 3.8865 -0.4377 0.8762 36 1 6.1363 0.1098 1.7409 37 1 6.0597 0.3837 -0.0159 38 1 5.7239 2.5349 2.1239 39 1 7.1923 2.2660 1.1535 40 1 5.7204 4.0944 0.2358 41 1 5.9689 2.7551 -0.9119 42 1 2.4232 3.4157 2.2773 43 1 3.6350 4.7195 2.2886 44 1 -2.4153 3.8484 0.7617 45 1 3.0761 6.9808 2.6253 46 1 1.4454 7.6357 2.0658 47 1 0.2643 6.0723 3.6768 48 1 1.8949 5.4174 4.2367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451227364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:11 Heat of formation + Delta-G solvation = -69.534799 kcal Electronic energy + Delta-G solvation = -30768.379697 eV Core-core repulsion = 26952.517960 eV Total energy + Delta-G solvation = -3815.861737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.52215 -37.12852 -36.81772 -35.59640 -34.78741 -32.71095 -32.29490 -31.89598 -30.85954 -28.25832 -26.18391 -25.27637 -24.02655 -22.75646 -21.65004 -20.93974 -20.35513 -19.06911 -18.14770 -17.28639 -16.42067 -16.09895 -15.69906 -15.25876 -15.11057 -14.58337 -14.51408 -14.27981 -14.13448 -13.84810 -13.73032 -13.36352 -13.20415 -12.82307 -12.61324 -12.43499 -12.09004 -11.92220 -11.65245 -11.44633 -11.34340 -11.15363 -11.09313 -11.00221 -10.99092 -10.85465 -10.64000 -10.62558 -10.49371 -10.39736 -10.17345 -9.83126 -9.50435 -9.41978 -9.06231 -8.94803 -8.65696 -8.37745 -8.25005 -5.92039 -3.99528 1.28436 3.39822 3.46132 3.48845 3.53654 4.51412 4.60681 4.64945 4.72738 4.74481 4.88952 4.97612 5.02212 5.04404 5.24300 5.30013 5.34074 5.34672 5.42059 5.48479 5.58771 5.64680 5.70839 5.77443 5.79855 5.90835 5.93475 5.98396 6.01896 6.08642 6.15189 6.17079 6.18948 6.26237 6.31923 6.39321 6.49652 6.53783 6.73899 6.75972 6.93828 6.97367 7.11921 7.18954 7.79803 8.05085 8.56089 9.07572 9.72263 11.19908 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.007837 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.839927 B = 3572.000279 C = 4629.034718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.056 3.944 4 H 0.178 0.822 5 O -0.526 6.526 6 C 0.129 3.871 7 H 0.078 0.922 8 C -0.137 4.137 9 C -0.113 4.113 10 C -0.137 4.137 11 C 0.122 3.878 12 N -1.006 6.006 13 S 2.628 3.372 14 O -0.992 6.992 15 O -0.904 6.904 16 C -0.572 4.572 17 C 0.019 3.981 18 C -0.512 4.512 19 H 0.081 0.919 20 C 0.115 3.885 21 N -0.881 5.881 22 Si 0.899 3.101 23 H -0.297 1.297 24 H -0.299 1.299 25 H -0.258 1.258 26 C -0.186 4.186 27 C -0.191 4.191 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.352 0.648 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.261 0.739 45 H 0.073 0.927 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.604 -10.719 2.577 17.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C -0.004 4.004 4 H 0.194 0.806 5 O -0.331 6.331 6 C 0.022 3.978 7 H 0.096 0.904 8 C -0.176 4.176 9 C -0.151 4.151 10 C -0.176 4.176 11 C -0.004 4.004 12 N -0.841 5.841 13 S 2.727 3.273 14 O -0.983 6.983 15 O -0.893 6.893 16 C -0.703 4.703 17 C 0.017 3.983 18 C -0.549 4.549 19 H 0.099 0.901 20 C -0.091 4.091 21 N -0.516 5.516 22 Si 0.730 3.270 23 H -0.225 1.225 24 H -0.226 1.226 25 H -0.183 1.183 26 C -0.223 4.223 27 C -0.229 4.229 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.199 0.801 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.158 0.842 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.801 -9.922 1.315 16.250 hybrid contribution 0.495 -1.255 2.135 2.526 sum 13.297 -11.177 3.451 17.710 Atomic orbital electron populations 1.21653 0.94730 1.00275 1.03693 1.22203 0.97609 0.97113 1.01548 1.23611 0.90356 0.93833 0.92561 0.80574 1.87184 1.76897 1.54489 1.14547 1.21688 0.95262 0.82131 0.98693 0.90432 1.22048 0.95975 1.00137 0.99456 1.21426 0.95648 0.96337 1.01671 1.21952 1.00361 0.95824 0.99464 1.21271 0.80443 1.00217 0.98470 1.58295 1.16247 1.19652 1.89941 1.04632 0.72734 0.71784 0.78136 1.93451 1.73324 1.54229 1.77250 1.93469 1.46850 1.76204 1.72826 1.30509 1.05018 1.09637 1.25113 1.18794 0.94879 0.89724 0.94924 1.20169 1.00054 1.30857 1.03818 0.90137 1.24690 0.94414 0.93918 0.96040 1.69894 1.07036 1.38499 1.36151 0.86616 0.78097 0.78793 0.83481 1.22477 1.22637 1.18266 1.23011 0.98458 0.95522 1.05285 1.22916 1.00460 1.05931 0.93594 0.92027 0.93825 0.91847 0.91665 0.92425 0.80108 0.91572 0.90776 0.92145 0.91958 0.91542 0.91206 0.89629 0.91750 0.84241 0.89581 0.92881 0.90873 0.89048 0.89265 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.81 37.16 0.36 -1.85 16 2 C -0.15 -1.87 5.00 -26.73 -0.13 -2.00 16 3 C 0.06 0.88 1.86 -26.73 -0.05 0.83 16 4 H 0.18 3.41 5.30 -54.79 -0.29 3.12 16 5 O -0.53 -9.21 5.33 -58.61 -0.31 -9.52 16 6 C 0.13 1.68 2.84 -67.60 -0.19 1.48 16 7 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 8 C -0.14 -1.38 4.61 -26.61 -0.12 -1.50 16 9 C -0.11 -1.02 5.88 -26.69 -0.16 -1.17 16 10 C -0.14 -1.34 6.08 -26.61 -0.16 -1.51 16 11 C 0.12 1.54 6.31 -3.71 -0.02 1.52 16 12 N -1.01 -15.25 3.19 -106.47 -0.34 -15.59 16 13 S 2.63 53.91 4.25 -107.50 -0.46 53.45 16 14 O -0.99 -23.02 16.78 -57.54 -0.97 -23.98 16 15 O -0.90 -21.30 10.62 -66.85 -0.71 -22.01 16 16 C -0.57 -11.28 5.51 37.16 0.20 -11.08 16 17 C 0.02 0.45 1.11 -155.66 -0.17 0.28 16 18 C -0.51 -14.29 6.85 -34.44 -0.24 -14.53 16 19 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.11 3.26 5.47 -17.82 -0.10 3.16 16 21 N -0.88 -26.82 13.96 55.43 0.77 -26.04 16 22 Si 0.90 21.98 23.01 -169.99 -3.91 18.07 16 23 H -0.30 -7.35 7.07 56.52 0.40 -6.95 16 24 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -5.61 5.35 56.52 0.30 -5.31 16 26 C -0.19 -3.94 9.88 -26.73 -0.26 -4.20 16 27 C -0.19 -4.09 7.47 -26.73 -0.20 -4.29 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 33 H 0.35 4.87 6.67 45.56 0.30 5.18 16 34 H 0.07 0.66 6.64 -51.93 -0.34 0.32 16 35 H 0.07 0.64 6.83 -51.93 -0.35 0.28 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.14 7.15 -51.93 -0.37 0.77 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 2.56 3.48 -51.92 -0.18 2.38 16 43 H 0.09 1.46 7.95 -51.92 -0.41 1.05 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 46 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 47 H 0.09 2.02 6.90 -51.93 -0.36 1.66 16 48 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -34.21 354.90 -9.31 -43.52 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.50 Total: 11.60 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -1.24 Total: -34.86 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.43 Total: -41.63 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.99 Total: -55.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -3.91 Total: 18.07 kcal Atomic # 16 Polarization: 53.91 SS G_CDS: -0.46 Total: 53.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.21 -9.31 -43.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451227364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.012 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds