Wall clock time and date at job start Tue Mar 31 2020 15:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46744 * 2 1 4 4 H 1.08996 * 109.47189 * 304.99658 * 3 2 1 5 5 O 1.42892 * 109.47588 * 65.00025 * 3 2 1 6 6 C 1.53007 * 109.46778 * 184.99744 * 3 2 1 7 7 H 1.09003 * 109.58401 * 64.16609 * 6 3 2 8 8 C 1.53187 * 109.58686 * 303.87890 * 6 3 2 9 9 C 1.53039 * 109.31233 * 185.57674 * 8 6 3 10 10 C 1.53044 * 109.53842 * 61.36465 * 9 8 6 11 11 C 1.53198 * 109.31052 * 298.63626 * 10 9 8 12 12 N 1.46922 * 108.77662 * 54.63290 * 11 10 9 13 13 S 1.65604 * 120.62875 * 126.38844 * 12 11 10 14 14 O 1.42096 * 104.27550 * 27.72738 * 13 12 11 15 15 O 1.42104 * 104.27617 * 155.58126 * 13 12 11 16 16 C 1.81396 * 104.45092 * 271.65165 * 13 12 11 17 17 C 1.52996 * 109.47123 * 187.93604 * 16 13 12 18 18 C 1.50703 * 115.55224 * 40.16501 * 17 16 13 19 19 H 1.07998 * 120.00142 * 269.91493 * 18 17 16 20 20 C 1.37880 * 119.99853 * 89.90710 * 18 17 16 21 21 N 1.31513 * 119.99937 * 179.27684 * 20 18 17 22 22 Si 1.86799 * 119.99937 * 359.27988 * 20 18 17 23 23 H 1.48499 * 109.47002 * 90.04498 * 22 20 18 24 24 H 1.48501 * 109.46794 * 210.04149 * 22 20 18 25 25 H 1.48497 * 109.47406 * 330.04595 * 22 20 18 26 26 C 1.52996 * 117.49931 * 254.45771 * 17 16 13 27 27 C 1.52997 * 60.00156 * 252.51060 * 26 17 16 28 28 H 1.09003 * 109.47273 * 60.00340 * 1 2 3 29 29 H 1.08998 * 109.46989 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47196 * 299.99917 * 1 2 3 31 31 H 1.08996 * 109.47196 * 240.00083 * 2 1 3 32 32 H 1.09003 * 109.46818 * 119.99938 * 2 1 3 33 33 H 0.96708 * 113.99747 * 59.99472 * 5 3 2 34 34 H 1.08993 * 109.49946 * 305.52699 * 8 6 3 35 35 H 1.08997 * 109.50079 * 65.62778 * 8 6 3 36 36 H 1.08996 * 109.46559 * 181.38633 * 9 8 6 37 37 H 1.09006 * 109.46050 * 301.34508 * 9 8 6 38 38 H 1.08994 * 109.49934 * 58.58486 * 10 9 8 39 39 H 1.08995 * 109.50082 * 178.68709 * 10 9 8 40 40 H 1.08999 * 109.58401 * 174.42517 * 11 10 9 41 41 H 1.09004 * 109.58533 * 294.70392 * 11 10 9 42 42 H 1.09005 * 109.47046 * 307.93880 * 16 13 12 43 43 H 1.09001 * 109.47231 * 67.93557 * 16 13 12 44 44 H 0.96992 * 120.00165 * 180.02562 * 21 20 18 45 45 H 1.09004 * 117.50111 * 0.02562 * 26 17 16 46 46 H 1.08999 * 117.50199 * 145.02171 * 26 17 16 47 47 H 1.09000 * 117.50071 * 252.51186 * 27 26 17 48 48 H 1.08999 * 117.50077 * 107.49296 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0815 1.2209 6 6 3.5648 1.4444 -0.1257 7 1 3.8525 1.0243 -1.0895 8 6 4.1741 0.6060 1.0024 9 6 5.6991 0.7250 0.9545 10 6 6.1054 2.1855 1.1645 11 6 5.5179 3.0417 0.0382 12 7 4.0664 2.8210 -0.0158 13 16 3.0156 4.0995 0.0461 14 8 3.7519 5.1849 -0.5007 15 8 1.8397 3.6177 -0.5898 16 6 2.7211 4.3580 1.8172 17 6 1.6081 5.3910 2.0037 18 6 0.4498 5.2786 1.0461 19 1 0.4695 5.8157 0.1094 20 6 -0.6350 4.4898 1.3659 21 7 -1.6520 4.4030 0.5366 22 14 -0.6600 3.5448 2.9770 23 1 -1.2755 4.3859 4.0347 24 1 -1.4540 2.3011 2.8089 25 1 0.7295 3.1960 3.3680 26 6 2.0152 6.7937 2.4590 27 6 1.3028 5.8508 3.4307 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0141 1.6543 2.0138 34 1 3.8108 0.9703 1.9633 35 1 3.8865 -0.4377 0.8762 36 1 6.1363 0.1098 1.7409 37 1 6.0597 0.3837 -0.0159 38 1 5.7239 2.5349 2.1239 39 1 7.1923 2.2660 1.1535 40 1 5.7204 4.0944 0.2358 41 1 5.9689 2.7551 -0.9119 42 1 2.4232 3.4157 2.2773 43 1 3.6350 4.7195 2.2886 44 1 -2.4153 3.8484 0.7617 45 1 3.0761 6.9808 2.6253 46 1 1.4454 7.6357 2.0658 47 1 0.2643 6.0723 3.6768 48 1 1.8949 5.4174 4.2367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451227364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:10 Heat of formation + Delta-G solvation = -95.522704 kcal Electronic energy + Delta-G solvation = -30769.506617 eV Core-core repulsion = 26952.517960 eV Total energy + Delta-G solvation = -3816.988658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59579 -38.78054 -38.22410 -37.05301 -36.44583 -34.07479 -33.87376 -33.23400 -31.82444 -29.87947 -27.49529 -27.16100 -24.94062 -23.81120 -23.34727 -21.98988 -21.48807 -20.76311 -19.55229 -18.74978 -18.26992 -17.37618 -16.95388 -16.84885 -16.49957 -16.12964 -15.57643 -15.50269 -15.39099 -15.25651 -14.82792 -14.69528 -14.49842 -14.36937 -14.26727 -13.99778 -13.37445 -13.14817 -12.99217 -12.83606 -12.73454 -12.59585 -12.52142 -12.34604 -12.22864 -12.14167 -12.03640 -11.96250 -11.82280 -11.56481 -11.54798 -11.42881 -11.34020 -10.85031 -10.64446 -10.49148 -10.28641 -10.09959 -9.69150 -8.11354 -6.22933 -0.25282 1.43645 1.49681 1.61850 2.13935 2.55420 3.10996 3.27543 3.34160 3.41834 3.62880 3.68013 3.87853 4.03943 4.08053 4.17132 4.23134 4.33569 4.35041 4.38714 4.40951 4.48041 4.52912 4.54811 4.67101 4.79826 4.84231 4.84913 4.95195 4.98212 5.02545 5.07666 5.12149 5.14301 5.17220 5.25416 5.29887 5.33087 5.39750 5.46606 5.50137 5.55703 5.74692 5.78478 5.94108 6.32802 6.81711 7.00609 7.52756 9.05446 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012610 B = 0.007837 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.839927 B = 3572.000279 C = 4629.034718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.056 3.944 4 H 0.128 0.872 5 O -0.553 6.553 6 C 0.131 3.869 7 H 0.087 0.913 8 C -0.133 4.133 9 C -0.111 4.111 10 C -0.132 4.132 11 C 0.111 3.889 12 N -0.998 5.998 13 S 2.622 3.378 14 O -1.033 7.033 15 O -0.948 6.948 16 C -0.560 4.560 17 C -0.013 4.013 18 C -0.506 4.506 19 H 0.018 0.982 20 C 0.061 3.939 21 N -0.940 5.940 22 Si 0.956 3.044 23 H -0.297 1.297 24 H -0.307 1.307 25 H -0.207 1.207 26 C -0.184 4.184 27 C -0.176 4.176 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.368 0.632 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.159 0.841 43 H 0.123 0.877 44 H 0.259 0.741 45 H 0.108 0.892 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.289 -13.686 6.004 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.004 4.004 4 H 0.145 0.855 5 O -0.361 6.361 6 C 0.025 3.975 7 H 0.105 0.895 8 C -0.171 4.171 9 C -0.148 4.148 10 C -0.171 4.171 11 C -0.014 4.014 12 N -0.837 5.837 13 S 2.723 3.277 14 O -1.024 7.024 15 O -0.938 6.938 16 C -0.692 4.692 17 C -0.015 4.015 18 C -0.544 4.544 19 H 0.036 0.964 20 C -0.139 4.139 21 N -0.578 5.578 22 Si 0.783 3.217 23 H -0.225 1.225 24 H -0.235 1.235 25 H -0.130 1.130 26 C -0.221 4.221 27 C -0.214 4.214 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.176 0.824 43 H 0.141 0.859 44 H 0.068 0.932 45 H 0.126 0.874 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 16.531 -12.871 4.733 21.479 hybrid contribution -0.649 -0.242 0.911 1.144 sum 15.882 -13.113 5.645 21.355 Atomic orbital electron populations 1.21643 0.97031 1.00975 1.00725 1.22135 0.95377 0.95678 1.04180 1.23311 0.92098 0.94579 0.90444 0.85517 1.87110 1.77574 1.55684 1.15776 1.21803 0.93448 0.81259 1.00982 0.89461 1.22073 0.96682 1.00491 0.97904 1.21442 0.94658 0.95847 1.02871 1.21953 1.01483 0.95768 0.97875 1.21568 0.78689 1.00533 1.00596 1.57819 1.16713 1.19220 1.89914 1.04433 0.72434 0.72020 0.78767 1.93386 1.73993 1.56536 1.78465 1.93506 1.49262 1.76811 1.74175 1.30329 1.05098 1.09440 1.24376 1.18731 0.94829 0.92400 0.95586 1.20155 1.02151 1.29518 1.02540 0.96394 1.25556 0.93651 0.94871 0.99816 1.70076 1.08262 1.40370 1.39050 0.85708 0.80642 0.76743 0.78593 1.22512 1.23494 1.12969 1.23116 1.00351 0.94058 1.04609 1.22987 1.00357 1.04841 0.93209 0.95172 0.91186 0.94685 0.89515 0.89001 0.78294 0.90947 0.88448 0.89921 0.91430 0.91292 0.89008 0.90858 0.90848 0.82372 0.85890 0.93227 0.87417 0.90661 0.90906 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.81 71.98 0.71 -3.71 16 2 C -0.14 -3.15 5.00 30.59 0.15 -3.00 16 3 C 0.06 1.69 1.86 30.60 0.06 1.75 16 4 H 0.13 5.24 5.30 -47.58 -0.25 4.99 16 5 O -0.55 -18.56 5.33 -126.63 -0.67 -19.24 16 6 C 0.13 3.07 2.84 44.98 0.13 3.20 16 7 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 8 C -0.13 -1.97 4.61 30.67 0.14 -1.83 16 9 C -0.11 -1.36 5.88 30.62 0.18 -1.18 16 10 C -0.13 -1.96 6.08 30.68 0.19 -1.77 16 11 C 0.11 2.53 6.31 86.37 0.54 3.07 16 12 N -1.00 -28.65 3.19 -490.77 -1.57 -30.22 16 13 S 2.62 109.05 4.25 -56.49 -0.24 108.81 16 14 O -1.03 -49.50 16.78 -127.65 -2.14 -51.64 16 15 O -0.95 -47.54 10.62 -118.75 -1.26 -48.80 16 16 C -0.56 -20.75 5.51 71.98 0.40 -20.36 16 17 C -0.01 -0.60 1.11 -52.93 -0.06 -0.66 16 18 C -0.51 -29.65 6.85 25.60 0.18 -29.47 16 19 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16 20 C 0.06 3.60 5.47 84.66 0.46 4.06 16 21 N -0.94 -61.18 13.96 21.45 0.30 -60.88 16 22 Si 0.96 45.19 23.01 68.60 1.58 46.77 16 23 H -0.30 -14.00 7.07 99.48 0.70 -13.30 16 24 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 25 H -0.21 -7.98 5.35 99.48 0.53 -7.45 16 26 C -0.18 -7.52 9.88 30.59 0.30 -7.22 16 27 C -0.18 -6.98 7.47 30.59 0.23 -6.76 16 28 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 1.23 7.82 -2.39 -0.02 1.21 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.55 6.80 -2.39 -0.02 1.53 16 33 H 0.37 8.77 6.67 -74.05 -0.49 8.28 16 34 H 0.07 1.02 6.64 -2.39 -0.02 1.01 16 35 H 0.10 1.06 6.83 -2.39 -0.02 1.04 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.07 1.84 7.15 -2.39 -0.02 1.83 16 41 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.16 5.19 3.48 -2.39 -0.01 5.19 16 43 H 0.12 3.62 7.95 -2.39 -0.02 3.60 16 44 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 45 H 0.11 3.64 8.09 -2.39 -0.02 3.62 16 46 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.07 3.14 6.90 -2.39 -0.02 3.13 16 48 H 0.11 3.60 8.14 -2.39 -0.02 3.58 16 Total: -1.00 -83.76 354.90 -0.36 -84.12 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.04 Total: 34.97 kcal Atomic # 6 Polarization: -67.49 SS G_CDS: 3.60 Total: -63.89 kcal Atomic # 7 Polarization: -89.83 SS G_CDS: -1.27 Total: -91.10 kcal Atomic # 8 Polarization: -115.61 SS G_CDS: -4.08 Total: -119.68 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.58 Total: 46.77 kcal Atomic # 16 Polarization: 109.05 SS G_CDS: -0.24 Total: 108.81 kcal Total: -83.76 -0.36 -84.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451227364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.399 kcal (2) G-P(sol) polarization free energy of solvation -83.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds