Wall clock time and date at job start Tue Mar 31 2020 17:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47834 * 2 1 4 4 C 1.53085 * 109.48339 * 239.96671 * 2 1 3 5 5 C 1.53176 * 109.16373 * 182.41063 * 4 2 1 6 6 H 1.09004 * 109.53888 * 297.10893 * 5 4 2 7 7 C 1.52998 * 109.61734 * 176.89389 * 5 4 2 8 8 C 1.53001 * 109.47146 * 175.39698 * 7 5 4 9 9 N 1.46507 * 109.46849 * 179.97438 * 8 7 5 10 10 S 1.65604 * 119.99540 * 165.00213 * 9 8 7 11 11 O 1.42107 * 104.27377 * 181.07320 * 10 9 8 12 12 O 1.42101 * 104.27678 * 308.92550 * 10 9 8 13 13 C 1.81392 * 104.45261 * 65.00048 * 10 9 8 14 14 C 1.53004 * 109.47296 * 173.81194 * 13 10 9 15 15 C 1.50698 * 115.54667 * 65.19220 * 14 13 10 16 16 H 1.07999 * 120.00061 * 264.78485 * 15 14 13 17 17 C 1.37875 * 120.00064 * 84.79004 * 15 14 13 18 18 N 1.31517 * 119.99995 * 352.22804 * 17 15 14 19 19 Si 1.86804 * 120.00338 * 172.22770 * 17 15 14 20 20 H 1.48501 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47241 * 119.99515 * 19 17 15 22 22 H 1.48495 * 109.47152 * 239.99970 * 19 17 15 23 23 C 1.52998 * 117.49669 * 279.52363 * 14 13 10 24 24 C 1.52994 * 117.49833 * 210.86438 * 14 13 10 25 25 C 1.53177 * 109.03953 * 56.97702 * 5 4 2 26 26 C 1.53090 * 109.16155 * 303.01989 * 25 5 4 27 27 O 1.42899 * 109.48003 * 120.02013 * 2 1 3 28 28 H 1.08994 * 109.47698 * 299.97989 * 1 2 3 29 29 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46729 * 59.98064 * 1 2 3 31 31 H 1.09001 * 109.52061 * 302.31323 * 4 2 1 32 32 H 1.09004 * 109.52544 * 62.50064 * 4 2 1 33 33 H 1.09006 * 109.46882 * 295.38979 * 7 5 4 34 34 H 1.08995 * 109.47915 * 55.39119 * 7 5 4 35 35 H 1.08993 * 109.47172 * 299.99123 * 8 7 5 36 36 H 1.09000 * 109.47388 * 59.99881 * 8 7 5 37 37 H 0.96996 * 120.00297 * 344.99918 * 9 8 7 38 38 H 1.09000 * 109.46922 * 293.81056 * 13 10 9 39 39 H 1.08998 * 109.47324 * 53.80984 * 13 10 9 40 40 H 0.97001 * 120.00205 * 185.02130 * 18 17 15 41 41 H 1.08997 * 117.49942 * 359.97438 * 23 14 13 42 42 H 1.09003 * 117.49854 * 145.02216 * 23 14 13 43 43 H 1.09004 * 117.49718 * 214.97943 * 24 14 13 44 44 H 1.09003 * 117.50379 * 359.97438 * 24 14 13 45 45 H 1.08999 * 109.52303 * 183.11926 * 25 5 4 46 46 H 1.08993 * 109.57429 * 62.95750 * 25 5 4 47 47 H 1.08998 * 109.48168 * 297.62807 * 26 25 5 48 48 H 1.08999 * 109.48960 * 177.59385 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2494 5 6 3.5711 -0.7709 -1.2119 6 1 3.9689 0.2435 -1.2407 7 6 4.0897 -1.5583 -2.4169 8 6 5.6187 -1.5078 -2.4395 9 7 6.1153 -2.2623 -3.5930 10 16 7.6851 -2.0801 -4.0879 11 8 7.7954 -2.9285 -5.2226 12 8 7.8546 -0.6741 -4.2053 13 6 8.6720 -2.7274 -2.7106 14 6 10.1486 -2.7563 -3.1105 15 6 10.7821 -1.4110 -3.3551 16 1 10.8389 -1.0153 -4.3584 17 6 11.2893 -0.6854 -2.2981 18 7 11.0861 -1.0918 -1.0639 19 14 12.2649 0.8749 -2.6190 20 1 12.3515 1.1124 -4.0823 21 1 11.5866 2.0253 -1.9697 22 1 13.6328 0.7271 -2.0602 23 6 10.6246 -3.9284 -3.9711 24 6 11.0257 -3.8490 -2.4960 25 6 4.0177 -1.4600 0.0812 26 6 3.4307 -0.7091 1.2792 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5141 -0.8898 31 1 1.6444 -1.7375 -1.2707 32 1 1.7149 -0.1845 -2.1398 33 1 3.7616 -2.5951 -2.3419 34 1 3.6981 -1.1187 -3.3342 35 1 5.9469 -0.4711 -2.5145 36 1 6.0104 -1.9475 -1.5222 37 1 5.5246 -2.8685 -4.0667 38 1 8.5442 -2.0857 -1.8389 39 1 8.3411 -3.7376 -2.4697 40 1 11.3792 -0.5445 -0.3187 41 1 9.8859 -4.6791 -4.2520 42 1 11.3963 -3.7265 -4.7140 43 1 12.0611 -3.5949 -2.2690 44 1 10.5509 -4.5471 -1.8065 45 1 5.1059 -1.4496 0.1424 46 1 3.6623 -2.4903 0.0874 47 1 3.8192 0.3092 1.2958 48 1 3.7099 -1.2197 2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451393438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:33 Heat of formation + Delta-G solvation = -121.481177 kcal Electronic energy + Delta-G solvation = -27320.699897 eV Core-core repulsion = 23502.585595 eV Total energy + Delta-G solvation = -3818.114301 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.85866 -36.77312 -36.61698 -36.15504 -35.07020 -33.88040 -32.98659 -32.05501 -29.28968 -28.16913 -27.66922 -25.46742 -23.94690 -23.28895 -21.25705 -21.22087 -20.36246 -19.65778 -18.59249 -16.89198 -16.56808 -16.49023 -16.16530 -15.75902 -15.57087 -15.04672 -14.80021 -14.67649 -14.43901 -14.11102 -13.87966 -13.63930 -13.13410 -12.94554 -12.64579 -12.62394 -12.17343 -12.06306 -11.94967 -11.87773 -11.71301 -11.34714 -11.27924 -11.19464 -11.15407 -11.03308 -10.96749 -10.95545 -10.59390 -10.57807 -10.46231 -10.41256 -10.12291 -9.71940 -9.63775 -9.16046 -8.96263 -8.58454 -8.09931 -6.15574 -4.25740 1.08454 3.27280 3.35183 3.42711 3.46028 3.56147 4.32787 4.36181 4.47460 4.55486 4.60176 4.72440 4.88401 4.98034 5.01965 5.05823 5.12763 5.18898 5.21468 5.24422 5.29425 5.34084 5.42047 5.51962 5.54315 5.59058 5.67515 5.73280 5.77200 5.84839 5.86989 5.95564 5.97523 6.04770 6.17315 6.22706 6.28341 6.36535 6.60157 6.71367 6.97400 7.04227 7.21542 7.29474 7.38122 7.79364 8.19416 8.80144 9.45405 10.92117 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003091 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.993800 B = 9057.274429 C = 9856.329961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.077 0.923 7 C -0.118 4.118 8 C 0.114 3.886 9 N -1.134 6.134 10 S 2.607 3.393 11 O -0.976 6.976 12 O -0.951 6.951 13 C -0.554 4.554 14 C 0.043 3.957 15 C -0.515 4.515 16 H 0.069 0.931 17 C 0.082 3.918 18 N -0.875 5.875 19 Si 0.892 3.108 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.208 4.208 24 C -0.141 4.141 25 C -0.157 4.157 26 C 0.061 3.939 27 O -0.383 6.383 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.344 -0.991 3.817 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.181 4.181 5 C -0.110 4.110 6 H 0.095 0.905 7 C -0.157 4.157 8 C -0.013 4.013 9 N -0.891 5.891 10 S 2.704 3.296 11 O -0.966 6.966 12 O -0.941 6.941 13 C -0.687 4.687 14 C 0.041 3.959 15 C -0.552 4.552 16 H 0.087 0.913 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.208 1.208 23 C -0.246 4.246 24 C -0.181 4.181 25 C -0.194 4.194 26 C -0.016 4.016 27 O -0.303 6.303 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.240 0.760 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.013 -0.528 3.404 18.339 hybrid contribution 0.509 0.326 0.346 0.696 sum -17.504 -0.202 3.749 17.902 Atomic orbital electron populations 1.21766 0.93269 1.02852 1.02320 1.22088 0.94877 0.95087 0.85262 0.92487 1.22273 0.95514 1.01996 0.98340 1.21200 0.95118 1.00137 0.94530 0.90451 1.21787 0.94569 1.00993 0.98309 1.21320 0.94924 0.97014 0.88024 1.55973 1.31292 1.58062 1.43766 1.05113 0.72771 0.75145 0.76540 1.93503 1.85459 1.69654 1.47984 1.93530 1.84309 1.30362 1.85884 1.29970 1.10610 1.09793 1.18308 1.18282 0.86966 0.91064 0.99614 1.20574 1.39179 1.00952 0.94509 0.91296 1.24953 0.94964 0.97501 0.94912 1.69987 1.45616 1.37376 0.98032 0.86517 0.79661 0.82824 0.79083 1.19222 1.20637 1.20850 1.23197 1.04125 1.02578 0.94653 1.22551 1.00845 1.01676 0.92988 1.22353 1.01932 1.00513 0.94638 1.22583 0.80677 0.99796 0.98512 1.87913 1.21311 1.78027 1.43007 0.91960 0.91871 0.91150 0.90952 0.90834 0.91216 0.90983 0.90196 0.91788 0.75956 0.84925 0.88289 0.92805 0.90685 0.89524 0.89595 0.91551 0.90003 0.90852 0.93088 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.56 37.16 0.36 -0.67 16 2 C 0.08 0.73 3.26 -26.69 -0.09 0.64 16 3 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.14 -1.17 4.71 -26.60 -0.13 -1.30 16 5 C -0.09 -0.82 2.27 -90.44 -0.21 -1.03 16 6 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 7 C -0.12 -1.14 4.84 -26.73 -0.13 -1.27 16 8 C 0.11 1.44 5.89 -4.04 -0.02 1.42 16 9 N -1.13 -16.41 5.89 -10.61 -0.06 -16.47 16 10 S 2.61 52.04 5.19 -107.50 -0.56 51.48 16 11 O -0.98 -21.33 18.08 -57.54 -1.04 -22.37 16 12 O -0.95 -22.49 17.17 -57.54 -0.99 -23.48 16 13 C -0.55 -11.43 5.93 37.16 0.22 -11.21 16 14 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 15 C -0.52 -14.02 8.18 -34.44 -0.28 -14.31 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C 0.08 2.21 5.38 -17.82 -0.10 2.11 16 18 N -0.87 -23.74 12.98 55.43 0.72 -23.02 16 19 Si 0.89 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 C -0.21 -4.56 9.96 -26.70 -0.27 -4.83 16 24 C -0.14 -3.20 9.49 -26.70 -0.25 -3.46 16 25 C -0.16 -1.44 5.10 -26.59 -0.14 -1.57 16 26 C 0.06 0.56 6.84 37.20 0.25 0.82 16 27 O -0.38 -4.05 10.41 -35.23 -0.37 -4.41 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.12 7.69 -51.93 -0.40 0.72 16 36 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 37 H 0.41 4.92 8.62 -34.47 -0.30 4.62 16 38 H 0.13 2.82 8.14 -51.92 -0.42 2.40 16 39 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 40 H 0.26 6.76 8.32 -40.82 -0.34 6.43 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 43 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 0.76 6.73 -51.93 -0.35 0.41 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -32.76 395.65 -10.88 -43.64 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.54 Total: 6.22 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: -0.98 Total: -33.82 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.66 Total: -39.49 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -2.39 Total: -50.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.56 Total: 51.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.76 -10.88 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.838 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds