Wall clock time and date at job start Tue Mar 31 2020 17:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47834 * 2 1 4 4 C 1.53085 * 109.48339 * 239.96671 * 2 1 3 5 5 C 1.53176 * 109.16373 * 182.41063 * 4 2 1 6 6 H 1.09004 * 109.53888 * 297.10893 * 5 4 2 7 7 C 1.52998 * 109.61734 * 176.89389 * 5 4 2 8 8 C 1.53001 * 109.47146 * 175.39698 * 7 5 4 9 9 N 1.46507 * 109.46849 * 179.97438 * 8 7 5 10 10 S 1.65604 * 119.99540 * 165.00213 * 9 8 7 11 11 O 1.42107 * 104.27377 * 181.07320 * 10 9 8 12 12 O 1.42101 * 104.27678 * 308.92550 * 10 9 8 13 13 C 1.81392 * 104.45261 * 65.00048 * 10 9 8 14 14 C 1.53004 * 109.47296 * 173.81194 * 13 10 9 15 15 C 1.50698 * 115.54667 * 65.19220 * 14 13 10 16 16 H 1.07999 * 120.00061 * 264.78485 * 15 14 13 17 17 C 1.37875 * 120.00064 * 84.79004 * 15 14 13 18 18 N 1.31517 * 119.99995 * 352.22804 * 17 15 14 19 19 Si 1.86804 * 120.00338 * 172.22770 * 17 15 14 20 20 H 1.48501 * 109.46952 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47241 * 119.99515 * 19 17 15 22 22 H 1.48495 * 109.47152 * 239.99970 * 19 17 15 23 23 C 1.52998 * 117.49669 * 279.52363 * 14 13 10 24 24 C 1.52994 * 117.49833 * 210.86438 * 14 13 10 25 25 C 1.53177 * 109.03953 * 56.97702 * 5 4 2 26 26 C 1.53090 * 109.16155 * 303.01989 * 25 5 4 27 27 O 1.42899 * 109.48003 * 120.02013 * 2 1 3 28 28 H 1.08994 * 109.47698 * 299.97989 * 1 2 3 29 29 H 1.09004 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46729 * 59.98064 * 1 2 3 31 31 H 1.09001 * 109.52061 * 302.31323 * 4 2 1 32 32 H 1.09004 * 109.52544 * 62.50064 * 4 2 1 33 33 H 1.09006 * 109.46882 * 295.38979 * 7 5 4 34 34 H 1.08995 * 109.47915 * 55.39119 * 7 5 4 35 35 H 1.08993 * 109.47172 * 299.99123 * 8 7 5 36 36 H 1.09000 * 109.47388 * 59.99881 * 8 7 5 37 37 H 0.96996 * 120.00297 * 344.99918 * 9 8 7 38 38 H 1.09000 * 109.46922 * 293.81056 * 13 10 9 39 39 H 1.08998 * 109.47324 * 53.80984 * 13 10 9 40 40 H 0.97001 * 120.00205 * 185.02130 * 18 17 15 41 41 H 1.08997 * 117.49942 * 359.97438 * 23 14 13 42 42 H 1.09003 * 117.49854 * 145.02216 * 23 14 13 43 43 H 1.09004 * 117.49718 * 214.97943 * 24 14 13 44 44 H 1.09003 * 117.50379 * 359.97438 * 24 14 13 45 45 H 1.08999 * 109.52303 * 183.11926 * 25 5 4 46 46 H 1.08993 * 109.57429 * 62.95750 * 25 5 4 47 47 H 1.08998 * 109.48168 * 297.62807 * 26 25 5 48 48 H 1.08999 * 109.48960 * 177.59385 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2494 5 6 3.5711 -0.7709 -1.2119 6 1 3.9689 0.2435 -1.2407 7 6 4.0897 -1.5583 -2.4169 8 6 5.6187 -1.5078 -2.4395 9 7 6.1153 -2.2623 -3.5930 10 16 7.6851 -2.0801 -4.0879 11 8 7.7954 -2.9285 -5.2226 12 8 7.8546 -0.6741 -4.2053 13 6 8.6720 -2.7274 -2.7106 14 6 10.1486 -2.7563 -3.1105 15 6 10.7821 -1.4110 -3.3551 16 1 10.8389 -1.0153 -4.3584 17 6 11.2893 -0.6854 -2.2981 18 7 11.0861 -1.0918 -1.0639 19 14 12.2649 0.8749 -2.6190 20 1 12.3515 1.1124 -4.0823 21 1 11.5866 2.0253 -1.9697 22 1 13.6328 0.7271 -2.0602 23 6 10.6246 -3.9284 -3.9711 24 6 11.0257 -3.8490 -2.4960 25 6 4.0177 -1.4600 0.0812 26 6 3.4307 -0.7091 1.2792 27 8 2.0066 -0.6740 1.1665 28 1 -0.3634 0.5135 0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5141 -0.8898 31 1 1.6444 -1.7375 -1.2707 32 1 1.7149 -0.1845 -2.1398 33 1 3.7616 -2.5951 -2.3419 34 1 3.6981 -1.1187 -3.3342 35 1 5.9469 -0.4711 -2.5145 36 1 6.0104 -1.9475 -1.5222 37 1 5.5246 -2.8685 -4.0667 38 1 8.5442 -2.0857 -1.8389 39 1 8.3411 -3.7376 -2.4697 40 1 11.3792 -0.5445 -0.3187 41 1 9.8859 -4.6791 -4.2520 42 1 11.3963 -3.7265 -4.7140 43 1 12.0611 -3.5949 -2.2690 44 1 10.5509 -4.5471 -1.8065 45 1 5.1059 -1.4496 0.1424 46 1 3.6623 -2.4903 0.0874 47 1 3.8192 0.3092 1.2958 48 1 3.7099 -1.2197 2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451393438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:32 Heat of formation + Delta-G solvation = -143.402530 kcal Electronic energy + Delta-G solvation = -27321.650478 eV Core-core repulsion = 23502.585595 eV Total energy + Delta-G solvation = -3819.064883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56853 -38.56445 -37.98686 -37.43261 -36.76375 -34.84733 -34.08478 -33.63554 -30.15845 -29.83622 -28.37508 -27.48714 -24.77772 -24.05847 -22.99038 -22.03053 -21.50986 -21.03306 -20.13186 -18.38163 -18.32633 -17.39620 -17.17518 -16.84266 -16.71938 -16.65018 -16.24029 -15.94560 -15.54903 -15.37148 -15.04292 -14.86387 -14.57145 -13.86184 -13.76271 -13.66203 -13.39042 -13.22076 -13.13586 -12.98602 -12.90431 -12.87564 -12.84484 -12.78540 -12.60832 -12.44419 -12.32542 -12.18586 -11.99411 -11.90317 -11.73157 -11.53484 -11.33819 -11.12210 -10.87322 -10.55252 -10.46805 -10.30881 -9.85104 -8.19696 -6.33917 -0.49264 1.36407 1.39971 1.50938 2.06050 2.39395 2.89952 2.95012 3.07575 3.38700 3.45158 3.65996 3.76276 3.84747 3.99567 4.05656 4.15278 4.24403 4.31394 4.31947 4.42324 4.49404 4.54104 4.58947 4.60234 4.62131 4.67428 4.83587 4.84779 4.85757 4.89633 4.97481 4.98107 5.06326 5.12208 5.16267 5.21505 5.25430 5.30254 5.34860 5.47418 5.49339 5.59008 5.71965 6.20749 6.23219 6.35811 6.72184 7.38265 8.87383 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014467 B = 0.003091 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.993800 B = 9057.274429 C = 9856.329961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.056 0.944 4 C -0.138 4.138 5 C -0.090 4.090 6 H 0.071 0.929 7 C -0.109 4.109 8 C 0.104 3.896 9 N -1.115 6.115 10 S 2.623 3.377 11 O -0.997 6.997 12 O -0.995 6.995 13 C -0.551 4.551 14 C 0.011 3.989 15 C -0.535 4.535 16 H 0.047 0.953 17 C 0.044 3.956 18 N -0.890 5.890 19 Si 0.935 3.065 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.197 4.197 24 C -0.138 4.138 25 C -0.156 4.156 26 C 0.058 3.942 27 O -0.401 6.401 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.423 0.577 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.266 0.734 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.839 -1.759 4.096 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.074 0.926 4 C -0.176 4.176 5 C -0.110 4.110 6 H 0.090 0.910 7 C -0.148 4.148 8 C -0.022 4.022 9 N -0.876 5.876 10 S 2.721 3.279 11 O -0.987 6.987 12 O -0.985 6.985 13 C -0.684 4.684 14 C 0.009 3.991 15 C -0.572 4.572 16 H 0.065 0.935 17 C -0.159 4.159 18 N -0.526 5.526 19 Si 0.760 3.240 20 H -0.199 1.199 21 H -0.201 1.201 22 H -0.197 1.197 23 C -0.235 4.235 24 C -0.177 4.177 25 C -0.193 4.193 26 C -0.019 4.019 27 O -0.321 6.321 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.259 0.741 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.069 0.931 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.504 -1.306 3.674 19.890 hybrid contribution 0.937 0.557 0.265 1.122 sum -18.567 -0.749 3.939 18.995 Atomic orbital electron populations 1.21776 0.92137 1.02977 1.03072 1.22261 0.95846 0.94979 0.84939 0.92555 1.22229 0.94523 1.02225 0.98581 1.21192 0.95909 0.99707 0.94158 0.91026 1.21741 0.92008 1.02193 0.98847 1.21563 0.97168 0.95913 0.87524 1.55428 1.29320 1.58448 1.44421 1.04311 0.73709 0.73884 0.76032 1.93463 1.86322 1.69748 1.49178 1.93477 1.85529 1.32961 1.86485 1.29859 1.08719 1.11814 1.18032 1.18411 0.88858 0.90260 1.01600 1.20732 1.40038 1.02794 0.93644 0.93456 1.25496 0.95705 0.99761 0.94971 1.70020 1.46151 1.38178 0.98269 0.85859 0.79139 0.80440 0.78538 1.19887 1.20078 1.19734 1.23247 1.04176 1.01901 0.94146 1.22510 0.99724 1.01511 0.93988 1.22339 1.01675 1.00632 0.94691 1.22651 0.80343 0.99956 0.98942 1.87894 1.21838 1.78346 1.43986 0.92156 0.92022 0.89499 0.90781 0.89623 0.89608 0.90439 0.91919 0.90615 0.74110 0.85798 0.84787 0.92526 0.88265 0.90024 0.91604 0.89323 0.90348 0.90598 0.93111 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.56 71.98 0.69 -1.09 16 2 C 0.08 1.22 3.26 30.62 0.10 1.32 16 3 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 4 C -0.14 -1.96 4.71 30.68 0.14 -1.81 16 5 C -0.09 -1.49 2.27 -10.68 -0.02 -1.51 16 6 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 7 C -0.11 -1.86 4.84 30.59 0.15 -1.71 16 8 C 0.10 2.49 5.89 86.38 0.51 2.99 16 9 N -1.11 -30.22 5.89 -187.48 -1.10 -31.33 16 10 S 2.62 102.79 5.19 -56.49 -0.29 102.50 16 11 O -1.00 -42.52 18.08 -127.65 -2.31 -44.83 16 12 O -0.99 -47.61 17.17 -127.65 -2.19 -49.80 16 13 C -0.55 -22.07 5.93 71.98 0.43 -21.64 16 14 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 15 C -0.53 -29.50 8.18 25.60 0.21 -29.29 16 16 H 0.05 2.73 7.83 -2.91 -0.02 2.71 16 17 C 0.04 2.38 5.38 84.65 0.46 2.83 16 18 N -0.89 -48.26 12.98 21.45 0.28 -47.98 16 19 Si 0.93 43.80 29.55 68.60 2.03 45.83 16 20 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 23 C -0.20 -8.41 9.96 30.62 0.30 -8.11 16 24 C -0.14 -6.12 9.49 30.62 0.29 -5.83 16 25 C -0.16 -2.63 5.10 30.68 0.16 -2.47 16 26 C 0.06 1.01 6.84 72.01 0.49 1.50 16 27 O -0.40 -8.02 10.41 -148.98 -1.55 -9.57 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.73 7.69 -2.39 -0.02 1.72 16 36 H 0.08 1.65 6.64 -2.39 -0.02 1.63 16 37 H 0.42 9.10 8.62 -96.75 -0.83 8.26 16 38 H 0.12 5.19 8.14 -2.39 -0.02 5.17 16 39 H 0.13 4.29 8.09 -2.39 -0.02 4.27 16 40 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 41 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 43 H 0.07 3.14 8.14 -2.38 -0.02 3.12 16 44 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 45 H 0.08 1.36 6.73 -2.39 -0.02 1.35 16 46 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.79 395.65 -1.22 -71.01 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.09 Total: 28.55 kcal Atomic # 6 Polarization: -68.21 SS G_CDS: 3.83 Total: -64.38 kcal Atomic # 7 Polarization: -78.48 SS G_CDS: -0.83 Total: -79.31 kcal Atomic # 8 Polarization: -98.15 SS G_CDS: -6.05 Total: -104.20 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 102.79 SS G_CDS: -0.29 Total: 102.50 kcal Total: -69.79 -1.22 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.393 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds