Wall clock time and date at job start Tue Mar 31 2020 17:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47701 * 2 1 4 4 C 1.53087 * 109.48100 * 120.03438 * 2 1 3 5 5 C 1.53173 * 109.16445 * 62.37508 * 4 2 1 6 6 H 1.09005 * 109.61651 * 297.07153 * 5 4 2 7 7 C 1.52998 * 109.54842 * 176.84855 * 5 4 2 8 8 C 1.52995 * 109.47737 * 175.44359 * 7 5 4 9 9 N 1.46494 * 109.47342 * 179.97438 * 8 7 5 10 10 S 1.65607 * 119.99997 * 164.99950 * 9 8 7 11 11 O 1.42103 * 104.27451 * 181.07145 * 10 9 8 12 12 O 1.42098 * 104.27727 * 308.92739 * 10 9 8 13 13 C 1.81396 * 104.44972 * 65.00157 * 10 9 8 14 14 C 1.52999 * 109.47438 * 173.86104 * 13 10 9 15 15 C 1.50699 * 115.54601 * 39.92040 * 14 13 10 16 16 H 1.07997 * 119.99966 * 264.79470 * 15 14 13 17 17 C 1.37882 * 119.99972 * 84.79507 * 15 14 13 18 18 N 1.31509 * 120.00212 * 353.00083 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 173.00465 * 17 15 14 20 20 H 1.48500 * 109.47239 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47252 * 119.99686 * 19 17 15 22 22 H 1.48496 * 109.47268 * 239.99916 * 19 17 15 23 23 C 1.52997 * 117.50262 * 254.21232 * 14 13 10 24 24 C 1.52999 * 117.49933 * 185.58578 * 14 13 10 25 25 C 1.53180 * 109.03829 * 56.98059 * 5 4 2 26 26 C 1.53095 * 109.16057 * 303.01995 * 25 5 4 27 27 O 1.42903 * 109.41451 * 57.60939 * 26 25 5 28 28 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46808 * 300.02316 * 1 2 3 30 30 H 1.09000 * 109.46913 * 60.02090 * 1 2 3 31 31 H 1.08995 * 109.52448 * 182.27972 * 4 2 1 32 32 H 1.08999 * 109.52221 * 302.46784 * 4 2 1 33 33 H 1.09007 * 109.46871 * 295.44476 * 7 5 4 34 34 H 1.08998 * 109.47234 * 55.43943 * 7 5 4 35 35 H 1.08997 * 109.47049 * 299.99995 * 8 7 5 36 36 H 1.09001 * 109.46868 * 59.99971 * 8 7 5 37 37 H 0.96996 * 120.00491 * 344.99806 * 9 8 7 38 38 H 1.09006 * 109.47345 * 293.86850 * 13 10 9 39 39 H 1.09007 * 109.47500 * 53.86134 * 13 10 9 40 40 H 0.96996 * 120.00313 * 185.01866 * 18 17 15 41 41 H 1.09005 * 117.49646 * 359.97438 * 23 14 13 42 42 H 1.08992 * 117.50120 * 145.01550 * 23 14 13 43 43 H 1.09003 * 117.49527 * 214.97530 * 24 14 13 44 44 H 1.08994 * 117.49948 * 359.97438 * 24 14 13 45 45 H 1.09004 * 109.52508 * 183.12004 * 25 5 4 46 46 H 1.09000 * 109.52224 * 62.92133 * 25 5 4 47 47 H 1.09001 * 109.48350 * 297.62320 * 26 25 5 48 48 H 1.08997 * 109.49140 * 177.59549 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 1.5758 -2.1814 1.2119 6 1 0.4868 -2.2194 1.2413 7 6 2.1468 -2.9317 2.4169 8 6 1.5910 -4.3569 2.4405 9 7 2.1382 -5.0755 3.5939 10 16 1.4449 -6.4953 4.0900 11 8 2.2092 -6.8808 5.2242 12 8 0.0626 -6.1878 4.2081 13 6 1.7266 -7.6419 2.7129 14 6 1.2623 -9.0437 3.1133 15 6 -0.0154 -9.1022 3.9103 16 1 0.0224 -9.1444 4.9888 17 6 -1.2326 -9.1018 3.2626 18 7 -1.2855 -8.9122 1.9623 19 14 -2.8065 -9.3705 4.2320 20 1 -2.4776 -9.5579 5.6680 21 1 -3.6911 -8.1878 4.0777 22 1 -3.5023 -10.5790 3.7214 23 6 2.3408 -10.0818 3.4295 24 6 1.5359 -10.1856 2.1325 25 6 2.0765 -2.8322 -0.0812 26 6 1.5646 -2.0283 -1.2793 27 8 2.0066 -0.6741 -1.1665 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 3.1298 -0.6875 1.2708 32 1 1.6421 -0.2359 2.1398 33 1 3.2336 -2.9668 2.3413 34 1 1.8628 -2.4158 3.3340 35 1 0.5042 -4.3219 2.5160 36 1 1.8750 -4.8729 1.5233 37 1 2.9066 -4.7197 4.0670 38 1 1.1640 -7.3080 1.8411 39 1 2.7894 -7.6663 2.4719 40 1 -2.1443 -8.8392 1.5173 41 1 3.3812 -9.7662 3.3519 42 1 2.1265 -10.8072 4.2143 43 1 0.7920 -10.9794 2.0640 44 1 2.0463 -9.9381 1.2018 45 1 1.7037 -3.8547 -0.1425 46 1 3.1665 -2.8399 -0.0867 47 1 0.4750 -2.0549 -1.2961 48 1 1.9529 -2.4619 -2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451393440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:40 Heat of formation + Delta-G solvation = -117.845780 kcal Electronic energy + Delta-G solvation = -27644.236417 eV Core-core repulsion = 23826.279758 eV Total energy + Delta-G solvation = -3817.956659 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12064 -36.72835 -36.57166 -36.01588 -34.88972 -33.87067 -32.42413 -32.05009 -29.46172 -28.17455 -27.74778 -25.46142 -23.89257 -23.69614 -21.47106 -21.20274 -19.68658 -19.46683 -18.53394 -16.90712 -16.58256 -16.42750 -16.16284 -15.73312 -15.52141 -14.96068 -14.76838 -14.67144 -14.30937 -14.14624 -13.81451 -13.66202 -13.12981 -13.05970 -12.70427 -12.49834 -12.22242 -12.03645 -11.96167 -11.83116 -11.65496 -11.44501 -11.12973 -11.08570 -11.04501 -10.98271 -10.93810 -10.84014 -10.56577 -10.50705 -10.34366 -10.19320 -10.10506 -9.70098 -9.63084 -9.13662 -8.89269 -8.54683 -8.10757 -6.16494 -4.30576 1.21741 3.30867 3.39527 3.45038 3.60987 3.66958 4.39414 4.40039 4.50334 4.54887 4.69991 4.74181 4.82917 5.02404 5.04857 5.10337 5.14173 5.19672 5.23176 5.24805 5.30117 5.33587 5.43084 5.56530 5.59982 5.64136 5.69837 5.73513 5.80312 5.89641 5.89793 5.99442 6.00984 6.07337 6.22066 6.27960 6.34265 6.36434 6.61742 6.69973 6.95251 7.02741 7.17689 7.35429 7.39100 7.78792 8.18844 8.78485 9.46503 10.91261 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.003209 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.661600 B = 8724.270582 C = 9120.567746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.086 3.914 3 H 0.099 0.901 4 C -0.143 4.143 5 C -0.091 4.091 6 H 0.080 0.920 7 C -0.119 4.119 8 C 0.115 3.885 9 N -1.139 6.139 10 S 2.624 3.376 11 O -0.978 6.978 12 O -0.943 6.943 13 C -0.560 4.560 14 C 0.050 3.950 15 C -0.542 4.542 16 H 0.070 0.930 17 C 0.097 3.903 18 N -0.867 5.867 19 Si 0.892 3.108 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.282 1.282 23 C -0.205 4.205 24 C -0.145 4.145 25 C -0.156 4.156 26 C 0.056 3.944 27 O -0.380 6.380 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.407 0.593 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.264 0.736 41 H 0.069 0.931 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.072 0.928 47 H 0.055 0.945 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 15.690 -6.029 18.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.028 3.972 3 H 0.117 0.883 4 C -0.181 4.181 5 C -0.110 4.110 6 H 0.098 0.902 7 C -0.158 4.158 8 C -0.012 4.012 9 N -0.895 5.895 10 S 2.721 3.279 11 O -0.968 6.968 12 O -0.932 6.932 13 C -0.693 4.693 14 C 0.048 3.952 15 C -0.579 4.579 16 H 0.088 0.912 17 C -0.110 4.110 18 N -0.501 5.501 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.209 1.209 23 C -0.242 4.242 24 C -0.183 4.183 25 C -0.193 4.193 26 C -0.021 4.021 27 O -0.299 6.299 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.073 0.927 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.280 15.560 -5.602 17.690 hybrid contribution -0.414 -0.262 0.033 0.491 sum 5.865 15.298 -5.569 17.304 Atomic orbital electron populations 1.22480 0.96387 1.03129 1.02626 1.22157 0.93514 0.96219 0.85277 0.88323 1.22232 1.01817 0.95714 0.98357 1.21222 1.01019 0.94307 0.94473 0.90213 1.21802 1.00851 0.94752 0.98345 1.21287 0.99318 0.92570 0.88004 1.56117 1.47260 1.42358 1.43759 1.04599 0.74068 0.73141 0.76139 1.93482 1.72719 1.82777 1.47831 1.93521 1.32169 1.82066 1.85491 1.29975 1.06697 1.13829 1.18767 1.18176 0.93914 0.83567 0.99514 1.20642 0.88694 1.55660 0.92942 0.91236 1.24890 0.99188 0.92260 0.94624 1.69954 1.25748 1.45940 1.08503 0.86513 0.82955 0.77794 0.80822 1.19201 1.20321 1.20851 1.23126 0.95130 1.05469 1.00448 1.22528 1.01431 1.03080 0.91305 1.22344 1.02066 1.00239 0.94689 1.22609 0.98997 0.82064 0.98421 1.87972 1.73760 1.24992 1.43193 0.91503 0.91452 0.91981 0.91010 0.90802 0.91276 0.90992 0.90210 0.92033 0.76090 0.85581 0.88552 0.92627 0.91267 0.89684 0.89651 0.91649 0.90127 0.90910 0.92714 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.46 8.65 37.16 0.32 -1.14 16 2 C 0.09 0.72 3.91 -26.68 -0.10 0.61 16 3 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -1.16 4.93 -26.60 -0.13 -1.29 16 5 C -0.09 -0.83 1.97 -90.44 -0.18 -1.01 16 6 H 0.08 0.75 6.62 -51.93 -0.34 0.41 16 7 C -0.12 -1.18 4.83 -26.73 -0.13 -1.31 16 8 C 0.11 1.50 5.89 -4.05 -0.02 1.47 16 9 N -1.14 -17.17 5.89 -10.62 -0.06 -17.23 16 10 S 2.62 55.02 4.63 -107.50 -0.50 54.52 16 11 O -0.98 -22.73 18.08 -57.54 -1.04 -23.77 16 12 O -0.94 -23.29 16.63 -57.54 -0.96 -24.25 16 13 C -0.56 -11.68 6.18 37.16 0.23 -11.45 16 14 C 0.05 1.23 1.64 -155.66 -0.26 0.97 16 15 C -0.54 -14.89 6.89 -34.44 -0.24 -15.13 16 16 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 17 C 0.10 2.68 5.39 -17.82 -0.10 2.58 16 18 N -0.87 -23.81 12.96 55.43 0.72 -23.09 16 19 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.20 -4.45 9.88 -26.73 -0.26 -4.72 16 24 C -0.14 -3.28 9.50 -26.73 -0.25 -3.54 16 25 C -0.16 -1.41 5.09 -26.59 -0.14 -1.55 16 26 C 0.06 0.50 6.52 37.21 0.24 0.75 16 27 O -0.38 -3.93 10.60 -35.23 -0.37 -4.31 16 28 H 0.07 0.55 4.98 -51.93 -0.26 0.30 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.16 7.69 -51.93 -0.40 0.76 16 36 H 0.06 0.73 6.65 -51.93 -0.35 0.38 16 37 H 0.41 5.15 8.62 -34.47 -0.30 4.86 16 38 H 0.13 2.62 8.14 -51.92 -0.42 2.20 16 39 H 0.10 1.68 7.95 -51.92 -0.41 1.26 16 40 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 41 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 43 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.08 0.74 6.74 -51.93 -0.35 0.39 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.48 6.34 -51.93 -0.33 0.15 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -33.02 386.57 -10.62 -43.64 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.20 Total: 6.59 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: -1.01 Total: -34.74 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.66 Total: -40.33 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -2.37 Total: -52.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 55.02 SS G_CDS: -0.50 Total: 54.52 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.02 -10.62 -43.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.201 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds