Wall clock time and date at job start Tue Mar 31 2020 17:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47701 * 2 1 4 4 C 1.53087 * 109.48100 * 120.03438 * 2 1 3 5 5 C 1.53173 * 109.16445 * 62.37508 * 4 2 1 6 6 H 1.09005 * 109.61651 * 297.07153 * 5 4 2 7 7 C 1.52998 * 109.54842 * 176.84855 * 5 4 2 8 8 C 1.52995 * 109.47737 * 175.44359 * 7 5 4 9 9 N 1.46494 * 109.47342 * 179.97438 * 8 7 5 10 10 S 1.65607 * 119.99997 * 164.99950 * 9 8 7 11 11 O 1.42103 * 104.27451 * 181.07145 * 10 9 8 12 12 O 1.42098 * 104.27727 * 308.92739 * 10 9 8 13 13 C 1.81396 * 104.44972 * 65.00157 * 10 9 8 14 14 C 1.52999 * 109.47438 * 173.86104 * 13 10 9 15 15 C 1.50699 * 115.54601 * 39.92040 * 14 13 10 16 16 H 1.07997 * 119.99966 * 264.79470 * 15 14 13 17 17 C 1.37882 * 119.99972 * 84.79507 * 15 14 13 18 18 N 1.31509 * 120.00212 * 353.00083 * 17 15 14 19 19 Si 1.86798 * 119.99848 * 173.00465 * 17 15 14 20 20 H 1.48500 * 109.47239 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47252 * 119.99686 * 19 17 15 22 22 H 1.48496 * 109.47268 * 239.99916 * 19 17 15 23 23 C 1.52997 * 117.50262 * 254.21232 * 14 13 10 24 24 C 1.52999 * 117.49933 * 185.58578 * 14 13 10 25 25 C 1.53180 * 109.03829 * 56.98059 * 5 4 2 26 26 C 1.53095 * 109.16057 * 303.01995 * 25 5 4 27 27 O 1.42903 * 109.41451 * 57.60939 * 26 25 5 28 28 H 1.09000 * 109.47021 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46808 * 300.02316 * 1 2 3 30 30 H 1.09000 * 109.46913 * 60.02090 * 1 2 3 31 31 H 1.08995 * 109.52448 * 182.27972 * 4 2 1 32 32 H 1.08999 * 109.52221 * 302.46784 * 4 2 1 33 33 H 1.09007 * 109.46871 * 295.44476 * 7 5 4 34 34 H 1.08998 * 109.47234 * 55.43943 * 7 5 4 35 35 H 1.08997 * 109.47049 * 299.99995 * 8 7 5 36 36 H 1.09001 * 109.46868 * 59.99971 * 8 7 5 37 37 H 0.96996 * 120.00491 * 344.99806 * 9 8 7 38 38 H 1.09006 * 109.47345 * 293.86850 * 13 10 9 39 39 H 1.09007 * 109.47500 * 53.86134 * 13 10 9 40 40 H 0.96996 * 120.00313 * 185.01866 * 18 17 15 41 41 H 1.09005 * 117.49646 * 359.97438 * 23 14 13 42 42 H 1.08992 * 117.50120 * 145.01550 * 23 14 13 43 43 H 1.09003 * 117.49527 * 214.97530 * 24 14 13 44 44 H 1.08994 * 117.49948 * 359.97438 * 24 14 13 45 45 H 1.09004 * 109.52508 * 183.12004 * 25 5 4 46 46 H 1.09000 * 109.52224 * 62.92133 * 25 5 4 47 47 H 1.09001 * 109.48350 * 297.62320 * 26 25 5 48 48 H 1.08997 * 109.49140 * 177.59549 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7224 1.2494 5 6 1.5758 -2.1814 1.2119 6 1 0.4868 -2.2194 1.2413 7 6 2.1468 -2.9317 2.4169 8 6 1.5910 -4.3569 2.4405 9 7 2.1382 -5.0755 3.5939 10 16 1.4449 -6.4953 4.0900 11 8 2.2092 -6.8808 5.2242 12 8 0.0626 -6.1878 4.2081 13 6 1.7266 -7.6419 2.7129 14 6 1.2623 -9.0437 3.1133 15 6 -0.0154 -9.1022 3.9103 16 1 0.0224 -9.1444 4.9888 17 6 -1.2326 -9.1018 3.2626 18 7 -1.2855 -8.9122 1.9623 19 14 -2.8065 -9.3705 4.2320 20 1 -2.4776 -9.5579 5.6680 21 1 -3.6911 -8.1878 4.0777 22 1 -3.5023 -10.5790 3.7214 23 6 2.3408 -10.0818 3.4295 24 6 1.5359 -10.1856 2.1325 25 6 2.0765 -2.8322 -0.0812 26 6 1.5646 -2.0283 -1.2793 27 8 2.0066 -0.6741 -1.1665 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5142 0.8898 30 1 -0.3633 0.5135 -0.8902 31 1 3.1298 -0.6875 1.2708 32 1 1.6421 -0.2359 2.1398 33 1 3.2336 -2.9668 2.3413 34 1 1.8628 -2.4158 3.3340 35 1 0.5042 -4.3219 2.5160 36 1 1.8750 -4.8729 1.5233 37 1 2.9066 -4.7197 4.0670 38 1 1.1640 -7.3080 1.8411 39 1 2.7894 -7.6663 2.4719 40 1 -2.1443 -8.8392 1.5173 41 1 3.3812 -9.7662 3.3519 42 1 2.1265 -10.8072 4.2143 43 1 0.7920 -10.9794 2.0640 44 1 2.0463 -9.9381 1.2018 45 1 1.7037 -3.8547 -0.1425 46 1 3.1665 -2.8399 -0.0867 47 1 0.4750 -2.0549 -1.2961 48 1 1.9529 -2.4619 -2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451393440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:39 Heat of formation + Delta-G solvation = -140.404389 kcal Electronic energy + Delta-G solvation = -27645.214632 eV Core-core repulsion = 23826.279758 eV Total energy + Delta-G solvation = -3818.934873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.81432 -38.53000 -37.90948 -37.40442 -36.64833 -34.84548 -34.09524 -33.09641 -30.30074 -29.86087 -28.50520 -27.49068 -24.77814 -24.38490 -22.95769 -22.31149 -21.45822 -20.30661 -20.01278 -18.48501 -18.19272 -17.46181 -16.99953 -16.87755 -16.84651 -16.60574 -16.23151 -15.86456 -15.42757 -15.32413 -15.14052 -14.83739 -14.54734 -13.94105 -13.81963 -13.73994 -13.67781 -13.29347 -13.05319 -12.91756 -12.86093 -12.82924 -12.77647 -12.61113 -12.56113 -12.43885 -12.26053 -12.08098 -12.06974 -11.86967 -11.73075 -11.54166 -11.30779 -10.88895 -10.86760 -10.52837 -10.40654 -10.27769 -9.87377 -8.23266 -6.40179 -0.41013 1.34216 1.39362 1.47866 2.18150 2.39255 2.99829 3.05132 3.08316 3.35380 3.56458 3.72222 3.78911 3.85313 3.98973 4.06503 4.14973 4.25738 4.32498 4.34734 4.48640 4.51500 4.56482 4.58160 4.60624 4.62126 4.64103 4.78644 4.86077 4.88921 4.93445 4.99071 4.99454 5.06793 5.13992 5.18969 5.20734 5.27066 5.32638 5.34348 5.41118 5.54199 5.61508 5.69134 6.21156 6.23508 6.35902 6.69005 7.37469 8.83953 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.003209 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.661600 B = 8724.270582 C = 9120.567746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.081 3.919 3 H 0.110 0.890 4 C -0.139 4.139 5 C -0.090 4.090 6 H 0.073 0.927 7 C -0.110 4.110 8 C 0.106 3.894 9 N -1.120 6.120 10 S 2.633 3.367 11 O -1.006 7.006 12 O -0.989 6.989 13 C -0.554 4.554 14 C 0.014 3.986 15 C -0.557 4.557 16 H 0.047 0.953 17 C 0.061 3.939 18 N -0.882 5.882 19 Si 0.926 3.074 20 H -0.272 1.272 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.191 4.191 24 C -0.141 4.141 25 C -0.155 4.155 26 C 0.053 3.947 27 O -0.397 6.397 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.421 0.579 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.267 0.733 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.054 0.946 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.331 16.685 -6.746 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.024 3.976 3 H 0.128 0.872 4 C -0.176 4.176 5 C -0.110 4.110 6 H 0.092 0.908 7 C -0.149 4.149 8 C -0.020 4.020 9 N -0.880 5.880 10 S 2.730 3.270 11 O -0.997 6.997 12 O -0.979 6.979 13 C -0.687 4.687 14 C 0.012 3.988 15 C -0.595 4.595 16 H 0.065 0.935 17 C -0.144 4.144 18 N -0.517 5.517 19 Si 0.751 3.249 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.192 1.192 23 C -0.228 4.228 24 C -0.180 4.180 25 C -0.192 4.192 26 C -0.023 4.023 27 O -0.317 6.317 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.257 0.743 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.715 16.548 -6.304 19.316 hybrid contribution -0.826 -0.538 0.244 1.015 sum 6.890 16.010 -6.059 18.453 Atomic orbital electron populations 1.22464 0.96147 1.02730 1.03108 1.22309 0.93772 0.96690 0.84838 0.87186 1.22197 1.01959 0.94832 0.98654 1.21207 1.00669 0.95012 0.94069 0.90848 1.21761 1.01705 0.92551 0.98908 1.21542 0.98447 0.94516 0.87517 1.55541 1.47450 1.40555 1.44503 1.03981 0.73097 0.73979 0.75941 1.93433 1.72862 1.83768 1.49598 1.93464 1.35131 1.83031 1.86268 1.29843 1.09085 1.11607 1.18188 1.18328 0.93969 0.85773 1.00759 1.20769 0.90720 1.55707 0.92277 0.93529 1.25394 1.01117 0.92444 0.95467 1.69975 1.26255 1.46586 1.08912 0.85994 0.80878 0.78203 0.79782 1.19687 1.20390 1.19194 1.23213 0.96193 1.03898 0.99532 1.22473 1.01308 1.01663 0.92544 1.22332 1.02198 1.00058 0.94658 1.22669 0.99064 0.81799 0.98818 1.87948 1.74126 1.25489 1.44123 0.92319 0.90446 0.92050 0.90748 0.89758 0.89612 0.90690 0.92132 0.90497 0.74314 0.85733 0.84624 0.92397 0.88047 0.90245 0.91797 0.89424 0.90374 0.90598 0.92756 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.66 8.65 71.98 0.62 -2.04 16 2 C 0.08 1.22 3.91 30.63 0.12 1.34 16 3 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.14 -1.93 4.93 30.68 0.15 -1.78 16 5 C -0.09 -1.48 1.97 -10.68 -0.02 -1.50 16 6 H 0.07 1.31 6.62 -2.38 -0.02 1.29 16 7 C -0.11 -1.94 4.83 30.59 0.15 -1.79 16 8 C 0.11 2.59 5.89 86.38 0.51 3.09 16 9 N -1.12 -31.89 5.89 -187.51 -1.10 -33.00 16 10 S 2.63 108.96 4.63 -56.49 -0.26 108.70 16 11 O -1.01 -46.33 18.08 -127.65 -2.31 -48.63 16 12 O -0.99 -49.68 16.63 -127.65 -2.12 -51.80 16 13 C -0.55 -22.18 6.18 71.98 0.45 -21.73 16 14 C 0.01 0.65 1.64 -52.93 -0.09 0.57 16 15 C -0.56 -30.97 6.89 25.60 0.18 -30.79 16 16 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 17 C 0.06 3.37 5.39 84.66 0.46 3.83 16 18 N -0.88 -48.54 12.96 21.45 0.28 -48.26 16 19 Si 0.93 44.92 29.55 68.60 2.03 46.94 16 20 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.19 -7.97 9.88 30.59 0.30 -7.66 16 24 C -0.14 -6.21 9.50 30.60 0.29 -5.92 16 25 C -0.15 -2.54 5.09 30.69 0.16 -2.39 16 26 C 0.05 0.89 6.52 72.01 0.47 1.36 16 27 O -0.40 -7.65 10.60 -148.98 -1.58 -9.23 16 28 H 0.06 0.93 4.98 -2.39 -0.01 0.91 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.74 7.69 -2.39 -0.02 1.72 16 36 H 0.08 1.66 6.65 -2.39 -0.02 1.65 16 37 H 0.42 9.71 8.62 -96.75 -0.83 8.87 16 38 H 0.12 5.02 8.14 -2.39 -0.02 5.00 16 39 H 0.14 4.24 7.95 -2.39 -0.02 4.22 16 40 H 0.27 13.94 8.32 -92.71 -0.77 13.17 16 41 H 0.10 3.54 8.08 -2.38 -0.02 3.52 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 43 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 45 H 0.08 1.31 6.74 -2.39 -0.02 1.29 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.05 0.90 6.34 -2.39 -0.02 0.89 16 48 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -70.97 386.57 -1.22 -72.19 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: 0.11 Total: 28.50 kcal Atomic # 6 Polarization: -69.15 SS G_CDS: 3.74 Total: -65.42 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -0.83 Total: -81.26 kcal Atomic # 8 Polarization: -103.65 SS G_CDS: -6.01 Total: -109.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 108.96 SS G_CDS: -0.26 Total: 108.70 kcal Total: -70.97 -1.22 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.214 kcal (2) G-P(sol) polarization free energy of solvation -70.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds