Wall clock time and date at job start Tue Mar 31 2020 17:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47925 * 2 1 4 4 C 1.53092 * 109.48075 * 120.03448 * 2 1 3 5 5 C 1.53178 * 109.16342 * 177.59813 * 4 2 1 6 6 H 1.09001 * 109.62143 * 62.92654 * 5 4 2 7 7 C 1.53000 * 109.54512 * 183.15179 * 5 4 2 8 8 C 1.52997 * 109.47223 * 184.55244 * 7 5 4 9 9 N 1.46507 * 109.47154 * 180.02562 * 8 7 5 10 10 S 1.65601 * 119.99912 * 164.99947 * 9 8 7 11 11 O 1.42101 * 104.27625 * 308.92579 * 10 9 8 12 12 O 1.42103 * 104.27177 * 181.06849 * 10 9 8 13 13 C 1.81395 * 104.44980 * 65.00069 * 10 9 8 14 14 C 1.53003 * 109.47147 * 182.79120 * 13 10 9 15 15 C 1.50700 * 115.54768 * 294.87162 * 14 13 10 16 16 H 1.08000 * 119.99833 * 95.23112 * 15 14 13 17 17 C 1.37877 * 119.99980 * 275.50944 * 15 14 13 18 18 N 1.31508 * 119.99954 * 5.79418 * 17 15 14 19 19 Si 1.86801 * 119.99817 * 185.80000 * 17 15 14 20 20 H 1.48496 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47185 * 120.00077 * 19 17 15 22 22 H 1.48506 * 109.46869 * 239.99766 * 19 17 15 23 23 C 1.53001 * 117.49911 * 80.53948 * 14 13 10 24 24 C 1.52994 * 117.49962 * 149.20311 * 14 13 10 25 25 C 1.53182 * 109.03416 * 303.01291 * 5 4 2 26 26 C 1.53100 * 109.16078 * 56.98240 * 25 5 4 27 27 O 1.42900 * 109.48138 * 239.97656 * 2 1 3 28 28 H 1.09009 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47352 * 300.01991 * 1 2 3 30 30 H 1.08998 * 109.46944 * 60.02604 * 1 2 3 31 31 H 1.08997 * 109.52743 * 57.68902 * 4 2 1 32 32 H 1.09006 * 109.52478 * 297.49674 * 4 2 1 33 33 H 1.09007 * 109.47230 * 64.54873 * 7 5 4 34 34 H 1.09004 * 109.47337 * 304.55512 * 7 5 4 35 35 H 1.08998 * 109.47365 * 59.99841 * 8 7 5 36 36 H 1.09005 * 109.47026 * 299.99836 * 8 7 5 37 37 H 0.97001 * 119.99734 * 344.99823 * 9 8 7 38 38 H 1.09002 * 109.47396 * 62.78957 * 13 10 9 39 39 H 1.09004 * 109.47277 * 302.79207 * 13 10 9 40 40 H 0.97008 * 119.99927 * 184.99729 * 18 17 15 41 41 H 1.08998 * 117.49629 * 215.00291 * 23 14 13 42 42 H 1.08997 * 117.49547 * 0.02952 * 23 14 13 43 43 H 1.09002 * 117.50152 * 359.97438 * 24 14 13 44 44 H 1.09003 * 117.50157 * 144.97610 * 24 14 13 45 45 H 1.08994 * 109.52285 * 176.88500 * 25 5 4 46 46 H 1.09002 * 109.52545 * 297.01952 * 25 5 4 47 47 H 1.09008 * 109.47906 * 62.37363 * 26 25 5 48 48 H 1.08994 * 109.48233 * 182.39327 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7709 1.2122 6 1 3.9702 0.2430 1.2416 7 6 4.0878 -1.5595 2.4171 8 6 5.6168 -1.5110 2.4409 9 7 6.1115 -2.2667 3.5943 10 16 7.7071 -2.7022 3.6762 11 8 7.9641 -3.3282 2.4267 12 8 7.8103 -3.4274 4.8939 13 6 8.6005 -1.1280 3.7953 14 6 10.1068 -1.3961 3.8079 15 6 10.6225 -2.1510 5.0059 16 1 10.7469 -3.2227 4.9563 17 6 10.9302 -1.4743 6.1671 18 7 10.6673 -0.1898 6.2689 19 14 11.7206 -2.3820 7.5957 20 1 11.9107 -3.8089 7.2311 21 1 13.0379 -1.7694 7.9034 22 1 10.8408 -2.2894 8.7885 23 6 10.7899 -1.6530 2.4632 24 6 11.0192 -0.3300 3.1983 25 6 4.0177 -1.4600 -0.0809 26 6 3.4307 -0.7092 -1.2791 27 8 2.0065 -0.6741 -1.1664 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5141 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 1.6444 -1.7376 1.2708 32 1 1.7148 -0.1845 2.1399 33 1 3.7582 -2.5958 2.3415 34 1 3.6960 -1.1198 3.3343 35 1 5.9463 -0.4747 2.5165 36 1 6.0085 -1.9508 1.5236 37 1 5.5044 -2.5119 4.3101 38 1 8.3147 -0.6166 4.7145 39 1 8.3500 -0.5023 2.9386 40 1 10.9488 0.3020 7.0563 41 1 11.6124 -2.3681 2.4451 42 1 10.1663 -1.6306 1.5696 43 1 10.5464 0.5622 2.7878 44 1 11.9925 -0.1744 3.6638 45 1 5.1059 -1.4496 -0.1421 46 1 3.6623 -2.4905 -0.0861 47 1 3.8192 0.3092 -1.2957 48 1 3.7102 -1.2199 -2.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451393441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:44 Heat of formation + Delta-G solvation = -121.519703 kcal Electronic energy + Delta-G solvation = -27183.366231 eV Core-core repulsion = 23365.250259 eV Total energy + Delta-G solvation = -3818.115972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.91281 -36.77117 -36.67950 -36.14634 -35.08857 -33.92231 -33.03351 -32.04638 -29.33303 -28.18070 -27.70798 -25.46220 -23.99939 -23.34565 -21.30852 -21.22887 -20.39678 -19.66703 -18.61877 -16.91147 -16.61757 -16.44656 -16.32531 -15.85275 -15.43069 -15.05511 -14.80959 -14.67386 -14.53610 -14.21945 -13.82541 -13.74196 -13.17612 -12.92422 -12.69576 -12.61264 -12.25511 -12.12228 -11.92431 -11.87221 -11.78040 -11.39132 -11.29761 -11.22991 -11.17294 -11.08301 -11.03246 -10.93548 -10.61003 -10.56606 -10.47287 -10.44250 -10.12332 -9.73678 -9.66446 -9.21924 -8.94557 -8.56392 -8.11327 -6.15322 -4.25401 1.08080 3.28263 3.36685 3.43010 3.44154 3.51119 4.27675 4.37739 4.42011 4.54741 4.56206 4.67257 4.82566 4.94062 4.94773 5.04455 5.10534 5.13674 5.17737 5.19369 5.25564 5.29763 5.36540 5.44472 5.48959 5.57535 5.62525 5.69626 5.71804 5.79559 5.82186 5.90323 5.92341 5.99865 6.14435 6.17811 6.25348 6.36996 6.59799 6.70025 6.97058 6.99022 7.22080 7.27995 7.37780 7.80009 8.19007 8.81290 9.46380 10.93055 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002616 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.391161 B =10701.881009 C =10980.355043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.144 4.144 5 C -0.090 4.090 6 H 0.076 0.924 7 C -0.119 4.119 8 C 0.114 3.886 9 N -1.133 6.133 10 S 2.607 3.393 11 O -0.975 6.975 12 O -0.950 6.950 13 C -0.553 4.553 14 C 0.042 3.958 15 C -0.511 4.511 16 H 0.069 0.931 17 C 0.079 3.921 18 N -0.875 5.875 19 Si 0.892 3.108 20 H -0.268 1.268 21 H -0.283 1.283 22 H -0.281 1.281 23 C -0.209 4.209 24 C -0.140 4.140 25 C -0.158 4.158 26 C 0.062 3.938 27 O -0.383 6.383 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.262 0.738 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 3.507 -10.976 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.182 4.182 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.158 4.158 8 C -0.013 4.013 9 N -0.890 5.890 10 S 2.704 3.296 11 O -0.965 6.965 12 O -0.940 6.940 13 C -0.687 4.687 14 C 0.040 3.960 15 C -0.548 4.548 16 H 0.087 0.913 17 C -0.125 4.125 18 N -0.511 5.511 19 Si 0.719 3.281 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.207 1.207 23 C -0.246 4.246 24 C -0.179 4.179 25 C -0.196 4.196 26 C -0.015 4.015 27 O -0.302 6.302 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.243 0.757 38 H 0.152 0.848 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.325 2.702 -11.127 20.766 hybrid contribution 0.387 0.543 1.421 1.570 sum -16.938 3.245 -9.706 19.789 Atomic orbital electron populations 1.21769 0.93231 1.02918 1.02333 1.22087 0.94926 0.95000 0.85251 0.92530 1.22281 0.95458 1.02112 0.98340 1.21195 0.95204 0.99889 0.94589 0.90595 1.21802 0.94464 1.01325 0.98219 1.21303 0.95271 0.95728 0.89004 1.55983 1.29460 1.73128 1.30467 1.05121 0.72551 0.77840 0.74106 1.93489 1.84119 1.73735 1.45192 1.93555 1.84403 1.69733 1.46334 1.29980 1.10270 1.19178 1.09226 1.18298 0.85314 1.00441 0.91994 1.20599 1.45489 0.93973 0.94755 0.91263 1.24949 0.94545 0.95005 0.98019 1.70017 1.44042 1.07736 1.29291 0.86523 0.78801 0.80571 0.82220 1.19198 1.20881 1.20673 1.23208 1.04447 1.01212 0.95770 1.22539 1.01883 0.90655 1.02849 1.22371 1.01853 1.00724 0.94618 1.22580 0.80759 0.99632 0.98535 1.87920 1.21249 1.78031 1.43007 0.91827 0.91125 0.91949 0.90864 0.90804 0.90934 0.91006 0.92136 0.90353 0.75657 0.84763 0.88515 0.92852 0.89494 0.90683 0.91580 0.89550 0.90088 0.90695 0.93196 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.56 37.16 0.36 -0.61 16 2 C 0.08 0.68 3.26 -26.69 -0.09 0.59 16 3 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 4 C -0.14 -1.09 4.70 -26.59 -0.13 -1.22 16 5 C -0.09 -0.74 2.28 -90.43 -0.21 -0.95 16 6 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 7 C -0.12 -1.10 4.83 -26.73 -0.13 -1.23 16 8 C 0.11 1.34 5.89 -4.04 -0.02 1.32 16 9 N -1.13 -16.47 5.89 -10.61 -0.06 -16.54 16 10 S 2.61 52.04 5.23 -107.50 -0.56 51.48 16 11 O -0.98 -21.12 17.50 -57.54 -1.01 -22.12 16 12 O -0.95 -22.63 17.56 -57.54 -1.01 -23.64 16 13 C -0.55 -11.45 5.93 37.16 0.22 -11.23 16 14 C 0.04 1.01 1.33 -155.66 -0.21 0.81 16 15 C -0.51 -13.98 8.03 -34.44 -0.28 -14.26 16 16 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 17 C 0.08 2.17 5.39 -17.82 -0.10 2.07 16 18 N -0.88 -24.04 12.93 55.43 0.72 -23.32 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 24 C -0.14 -3.16 9.45 -26.69 -0.25 -3.41 16 25 C -0.16 -1.37 5.09 -26.59 -0.14 -1.50 16 26 C 0.06 0.52 6.84 37.21 0.25 0.77 16 27 O -0.38 -3.80 10.41 -35.23 -0.37 -4.17 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.96 6.20 -51.93 -0.32 0.64 16 37 H 0.41 5.22 8.62 -34.47 -0.30 4.92 16 38 H 0.13 2.91 8.14 -51.92 -0.42 2.48 16 39 H 0.10 1.66 8.09 -51.92 -0.42 1.24 16 40 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 45 H 0.08 0.70 6.74 -51.93 -0.35 0.35 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -33.06 395.28 -10.88 -43.93 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -8.54 Total: 5.62 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: -0.97 Total: -33.65 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.65 Total: -39.86 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.38 Total: -49.93 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.56 Total: 51.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.06 -10.88 -43.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.586 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds