Wall clock time and date at job start Tue Mar 31 2020 17:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47925 * 2 1 4 4 C 1.53092 * 109.48075 * 120.03448 * 2 1 3 5 5 C 1.53178 * 109.16342 * 177.59813 * 4 2 1 6 6 H 1.09001 * 109.62143 * 62.92654 * 5 4 2 7 7 C 1.53000 * 109.54512 * 183.15179 * 5 4 2 8 8 C 1.52997 * 109.47223 * 184.55244 * 7 5 4 9 9 N 1.46507 * 109.47154 * 180.02562 * 8 7 5 10 10 S 1.65601 * 119.99912 * 164.99947 * 9 8 7 11 11 O 1.42101 * 104.27625 * 308.92579 * 10 9 8 12 12 O 1.42103 * 104.27177 * 181.06849 * 10 9 8 13 13 C 1.81395 * 104.44980 * 65.00069 * 10 9 8 14 14 C 1.53003 * 109.47147 * 182.79120 * 13 10 9 15 15 C 1.50700 * 115.54768 * 294.87162 * 14 13 10 16 16 H 1.08000 * 119.99833 * 95.23112 * 15 14 13 17 17 C 1.37877 * 119.99980 * 275.50944 * 15 14 13 18 18 N 1.31508 * 119.99954 * 5.79418 * 17 15 14 19 19 Si 1.86801 * 119.99817 * 185.80000 * 17 15 14 20 20 H 1.48496 * 109.47212 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47185 * 120.00077 * 19 17 15 22 22 H 1.48506 * 109.46869 * 239.99766 * 19 17 15 23 23 C 1.53001 * 117.49911 * 80.53948 * 14 13 10 24 24 C 1.52994 * 117.49962 * 149.20311 * 14 13 10 25 25 C 1.53182 * 109.03416 * 303.01291 * 5 4 2 26 26 C 1.53100 * 109.16078 * 56.98240 * 25 5 4 27 27 O 1.42900 * 109.48138 * 239.97656 * 2 1 3 28 28 H 1.09009 * 109.46758 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47352 * 300.01991 * 1 2 3 30 30 H 1.08998 * 109.46944 * 60.02604 * 1 2 3 31 31 H 1.08997 * 109.52743 * 57.68902 * 4 2 1 32 32 H 1.09006 * 109.52478 * 297.49674 * 4 2 1 33 33 H 1.09007 * 109.47230 * 64.54873 * 7 5 4 34 34 H 1.09004 * 109.47337 * 304.55512 * 7 5 4 35 35 H 1.08998 * 109.47365 * 59.99841 * 8 7 5 36 36 H 1.09005 * 109.47026 * 299.99836 * 8 7 5 37 37 H 0.97001 * 119.99734 * 344.99823 * 9 8 7 38 38 H 1.09002 * 109.47396 * 62.78957 * 13 10 9 39 39 H 1.09004 * 109.47277 * 302.79207 * 13 10 9 40 40 H 0.97008 * 119.99927 * 184.99729 * 18 17 15 41 41 H 1.08998 * 117.49629 * 215.00291 * 23 14 13 42 42 H 1.08997 * 117.49547 * 0.02952 * 23 14 13 43 43 H 1.09002 * 117.50152 * 359.97438 * 24 14 13 44 44 H 1.09003 * 117.50157 * 144.97610 * 24 14 13 45 45 H 1.08994 * 109.52285 * 176.88500 * 25 5 4 46 46 H 1.09002 * 109.52545 * 297.01952 * 25 5 4 47 47 H 1.09008 * 109.47906 * 62.37363 * 26 25 5 48 48 H 1.08994 * 109.48233 * 182.39327 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0405 -0.7224 1.2495 5 6 3.5711 -0.7709 1.2122 6 1 3.9702 0.2430 1.2416 7 6 4.0878 -1.5595 2.4171 8 6 5.6168 -1.5110 2.4409 9 7 6.1115 -2.2667 3.5943 10 16 7.7071 -2.7022 3.6762 11 8 7.9641 -3.3282 2.4267 12 8 7.8103 -3.4274 4.8939 13 6 8.6005 -1.1280 3.7953 14 6 10.1068 -1.3961 3.8079 15 6 10.6225 -2.1510 5.0059 16 1 10.7469 -3.2227 4.9563 17 6 10.9302 -1.4743 6.1671 18 7 10.6673 -0.1898 6.2689 19 14 11.7206 -2.3820 7.5957 20 1 11.9107 -3.8089 7.2311 21 1 13.0379 -1.7694 7.9034 22 1 10.8408 -2.2894 8.7885 23 6 10.7899 -1.6530 2.4632 24 6 11.0192 -0.3300 3.1983 25 6 4.0177 -1.4600 -0.0809 26 6 3.4307 -0.7092 -1.2791 27 8 2.0065 -0.6741 -1.1664 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5141 0.8898 30 1 -0.3633 0.5134 -0.8902 31 1 1.6444 -1.7376 1.2708 32 1 1.7148 -0.1845 2.1399 33 1 3.7582 -2.5958 2.3415 34 1 3.6960 -1.1198 3.3343 35 1 5.9463 -0.4747 2.5165 36 1 6.0085 -1.9508 1.5236 37 1 5.5044 -2.5119 4.3101 38 1 8.3147 -0.6166 4.7145 39 1 8.3500 -0.5023 2.9386 40 1 10.9488 0.3020 7.0563 41 1 11.6124 -2.3681 2.4451 42 1 10.1663 -1.6306 1.5696 43 1 10.5464 0.5622 2.7878 44 1 11.9925 -0.1744 3.6638 45 1 5.1059 -1.4496 -0.1421 46 1 3.6623 -2.4905 -0.0861 47 1 3.8192 0.3092 -1.2957 48 1 3.7102 -1.2199 -2.2005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451393441.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:43 Heat of formation + Delta-G solvation = -143.778236 kcal Electronic energy + Delta-G solvation = -27184.331434 eV Core-core repulsion = 23365.250259 eV Total energy + Delta-G solvation = -3819.081174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55596 -38.56193 -37.99301 -37.41104 -36.77252 -34.83729 -34.08433 -33.62351 -30.14548 -29.84242 -28.36171 -27.48920 -24.75684 -24.05135 -22.98297 -22.02406 -21.50744 -20.98126 -20.15474 -18.42913 -18.29025 -17.42509 -17.21178 -16.84736 -16.72453 -16.54025 -16.15949 -15.81277 -15.60478 -15.44152 -15.14258 -14.87297 -14.52214 -13.80480 -13.73725 -13.65151 -13.37840 -13.24857 -13.15803 -12.96630 -12.94359 -12.88983 -12.84770 -12.74163 -12.55692 -12.45026 -12.37452 -12.21100 -11.98241 -11.90705 -11.74029 -11.54780 -11.24678 -11.09855 -10.86200 -10.55976 -10.40841 -10.32527 -9.86152 -8.20702 -6.34449 -0.48789 1.35862 1.40262 1.51072 2.05135 2.39787 2.91907 2.97227 3.07537 3.36394 3.46388 3.65721 3.77313 3.86998 4.00666 4.06516 4.16812 4.26386 4.28385 4.32842 4.41619 4.50926 4.53705 4.58058 4.60703 4.64873 4.68165 4.84355 4.85591 4.87052 4.91551 4.96621 4.98465 5.07851 5.12332 5.17591 5.22318 5.27015 5.30878 5.35813 5.47369 5.51186 5.60009 5.71933 6.17345 6.22489 6.38212 6.72563 7.38247 8.87134 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023262 B = 0.002616 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.391161 B =10701.881009 C =10980.355043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.079 3.921 3 H 0.063 0.937 4 C -0.140 4.140 5 C -0.087 4.087 6 H 0.086 0.914 7 C -0.113 4.113 8 C 0.101 3.899 9 N -1.119 6.119 10 S 2.623 3.377 11 O -0.995 6.995 12 O -0.997 6.997 13 C -0.551 4.551 14 C 0.008 3.992 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.040 3.960 18 N -0.892 5.892 19 Si 0.935 3.065 20 H -0.274 1.274 21 H -0.270 1.270 22 H -0.278 1.278 23 C -0.197 4.197 24 C -0.137 4.137 25 C -0.159 4.159 26 C 0.059 3.941 27 O -0.404 6.404 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.421 0.579 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.778 4.737 -11.524 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.021 3.979 3 H 0.081 0.919 4 C -0.178 4.178 5 C -0.106 4.106 6 H 0.104 0.896 7 C -0.152 4.152 8 C -0.024 4.024 9 N -0.880 5.880 10 S 2.720 3.280 11 O -0.985 6.985 12 O -0.987 6.987 13 C -0.684 4.684 14 C 0.006 3.994 15 C -0.567 4.567 16 H 0.066 0.934 17 C -0.162 4.162 18 N -0.528 5.528 19 Si 0.760 3.240 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.204 1.204 23 C -0.234 4.234 24 C -0.176 4.176 25 C -0.197 4.197 26 C -0.017 4.017 27 O -0.324 6.324 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.526 3.931 -11.673 22.247 hybrid contribution 0.713 0.161 1.524 1.690 sum -17.814 4.092 -10.149 20.906 Atomic orbital electron populations 1.21787 0.92439 1.02773 1.03122 1.22256 0.95661 0.95164 0.84787 0.91893 1.22249 0.94842 1.01894 0.98808 1.21187 0.95685 1.00057 0.93675 0.89615 1.21765 0.92469 1.01561 0.99377 1.21653 0.97045 0.96213 0.87509 1.55499 1.27358 1.73339 1.31774 1.04315 0.73544 0.77354 0.72744 1.93458 1.85095 1.74296 1.45617 1.93488 1.85706 1.71246 1.48239 1.29856 1.08125 1.20075 1.10313 1.18426 0.87370 1.01582 0.92028 1.20767 1.46023 0.93345 0.96559 0.93447 1.25505 0.95178 0.95793 0.99770 1.70051 1.44614 1.08270 1.29904 0.85862 0.78717 0.79360 0.80041 1.19872 1.19522 1.20365 1.23257 1.04091 1.00437 0.95618 1.22500 1.00757 0.91672 1.02639 1.22371 1.01825 1.00280 0.95202 1.22656 0.80251 1.00186 0.98645 1.87900 1.22003 1.78451 1.44009 0.92428 0.89439 0.92085 0.91616 0.89336 0.91307 0.89647 0.90200 0.90743 0.74379 0.85900 0.84794 0.92612 0.90009 0.88131 0.89254 0.91597 0.90070 0.91757 0.92277 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.56 71.98 0.69 -0.97 16 2 C 0.08 1.11 3.26 30.62 0.10 1.21 16 3 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.14 -1.81 4.70 30.68 0.14 -1.67 16 5 C -0.09 -1.22 2.28 -10.67 -0.02 -1.24 16 6 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 7 C -0.11 -1.79 4.83 30.59 0.15 -1.64 16 8 C 0.10 2.13 5.89 86.38 0.51 2.64 16 9 N -1.12 -30.54 5.89 -187.48 -1.10 -31.65 16 10 S 2.62 102.75 5.23 -56.49 -0.30 102.45 16 11 O -0.99 -42.13 17.50 -127.65 -2.23 -44.37 16 12 O -1.00 -47.99 17.56 -127.65 -2.24 -50.23 16 13 C -0.55 -21.99 5.93 71.98 0.43 -21.56 16 14 C 0.01 0.39 1.33 -52.93 -0.07 0.32 16 15 C -0.53 -29.32 8.03 25.60 0.21 -29.12 16 16 H 0.05 2.75 7.82 -2.91 -0.02 2.73 16 17 C 0.04 2.20 5.39 84.66 0.46 2.65 16 18 N -0.89 -48.86 12.93 21.45 0.28 -48.59 16 19 Si 0.93 44.16 29.54 68.60 2.03 46.19 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 C -0.20 -8.28 9.96 30.62 0.30 -7.97 16 24 C -0.14 -5.99 9.45 30.62 0.29 -5.70 16 25 C -0.16 -2.50 5.09 30.69 0.16 -2.35 16 26 C 0.06 0.90 6.84 72.02 0.49 1.39 16 27 O -0.40 -7.51 10.41 -148.98 -1.55 -9.06 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.65 6.20 -2.38 -0.01 1.64 16 37 H 0.42 9.99 8.62 -96.74 -0.83 9.16 16 38 H 0.12 5.21 8.14 -2.39 -0.02 5.19 16 39 H 0.13 4.19 8.09 -2.39 -0.02 4.17 16 40 H 0.26 13.75 8.32 -92.70 -0.77 12.97 16 41 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 44 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.08 1.26 6.74 -2.39 -0.02 1.24 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -70.74 395.28 -1.20 -71.94 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.09 Total: 27.33 kcal Atomic # 6 Polarization: -67.84 SS G_CDS: 3.83 Total: -64.02 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -0.83 Total: -80.23 kcal Atomic # 8 Polarization: -97.63 SS G_CDS: -6.03 Total: -103.66 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 102.75 SS G_CDS: -0.30 Total: 102.45 kcal Total: -70.74 -1.20 -71.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451393441.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.843 kcal (2) G-P(sol) polarization free energy of solvation -70.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds